Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8H9E	34564	2024-09-30	2022-10-25	2.53	2.86	2.66	2.9	0.008	0.80	0.0	0.05	14.54	0.01	1.956	5.74	0.00	2.7	97.2	0.1	-1.86	0.75	0.89	4.37	2.9	0.003	0.57	0.0	0.04	16.48	0.00	1.945	4.95	1.25	1.6	98.4	0.0	1.00	0.84	0.65	0.88	3.55	24214	3162	14	0	10	0	0	logfile
✔	8CLL	16717	2024-09-30	2023-02-16	3.4	3.64	3.50	3.5	0.003	0.66	0.0	0.05	12.97	0.01	1.984	2.24	0.00	2.1	97.9	0.0	-0.75	0.81	0.84	3.23	3.5	0.003	0.64	0.0	0.04	14.73	0.00	2.244	5.71	1.16	2.0	98.0	0.0	0.51	0.66	0.85	0.87	2.28	25226	3152	8	0	4	0	0	logfile
✔	8GJJ	40091	2024-09-30	2023-03-15	3.08	3.71	3.24	3.6	0.005	0.57	0.0	0.04	10.87	0.00	2.166	7.65	2.74	2.2	97.8	0.0	1.59	0.79	0.84	2.69	3.6	0.004	0.62	0.0	0.04	13.71	0.00	2.179	9.59	2.17	2.4	97.6	0.0	1.72	1.65	0.77	0.87	1.97	23928	3096	3	0	0	0	0	logfile
✔	7YBN	33727	2024-09-30	2022-06-29	3.82	3.91	3.79	3.8	0.003	0.61	0.0	0.04	13.96	0.01	1.771	9.46	0.71	3.5	96.4	0.1	-1.31	0.72	0.74	1.87	3.8	0.004	0.67	0.0	0.05	15.71	0.00	2.416	7.72	2.40	5.1	94.9	0.0	-1.04	0.53	0.74	0.77	1.73	25301	3232	3	0	0	0	0	logfile
✔	7YRY	34066	2024-09-30	2022-08-11	3.0	2.80	2.85	2.9	0.002	0.54	0.0	0.04	17.93	0.00	2.041	5.87	3.35	2.5	97.5	0.0	0.38	0.86	0.88	2.67	2.9	0.003	0.60	0.0	0.04	17.73	0.00	1.946	5.29	2.93	3.2	96.8	0.0	0.72	0.24	0.86	0.88	2.68	25056	3282	13	0	9	0	0	logfile
✔	8EPP	28532	2024-09-30	2022-10-06	3.1	3.64	3.26	2.9	0.004	0.59	0.0	0.05	16.17	0.00	2.217	7.58	0.35	3.6	96.2	0.1	0.11	0.84	0.84	2.03	2.9	0.003	0.57	0.0	0.05	14.71	0.00	2.348	6.18	2.30	4.1	95.8	0.1	0.20	0.38	0.85	0.84	1.91	23913	2939	21	0	66	0	0	logfile
✔	8J5Z	35996	2024-09-30	2023-04-24	4.75	4.34	4.69	4.2	0.002	0.47	0.0	0.04	12.56	0.00	2.224	6.20	3.96	5.1	94.9	0.0	-0.77	0.80	0.75	—	4.2	0.003	0.65	0.0	0.04	12.07	0.00	2.506	9.48	0.00	4.9	95.1	0.0	-0.99	1.36	0.80	0.75	—	24856	3056	8	0	4	0	0	logfile
✔	8BVQ	16268	2024-09-30	2022-12-05	3.3	3.33	3.29	3.5	0.004	0.55	0.0	0.04	16.05	0.00	2.088	7.55	0.31	4.1	95.9	0.0	-0.42	0.54	0.73	1.75	3.5	0.003	0.52	0.0	0.04	16.39	0.00	2.355	4.80	2.20	5.1	94.9	0.0	-0.53	0.87	0.58	0.79	1.84	23133	1518	6	0	0	0	11258	logfile
✔	8HH6	34753	2024-09-30	2022-11-16	2.9	3.16	3.03	3.1	0.003	0.58	0.0	0.04	13.71	0.00	2.002	5.07	0.00	2.3	97.7	0.0	1.53	0.80	0.89	3.28	3.1	0.004	0.58	0.0	0.05	15.75	0.00	1.933	4.49	1.79	2.9	97.1	0.0	1.19	1.30	0.80	0.91	3.10	24277	3129	13	0	13	0	0	logfile
✔	8H9i	34568	2024-09-30	2022-10-25	2.77	3.11	2.93	3.1	0.007	0.80	0.0	0.05	14.44	0.00	1.946	8.69	0.00	4.3	95.7	0.1	-2.77	0.71	0.87	3.68	3.1	0.005	0.66	0.0	0.05	16.80	0.00	1.889	7.10	1.61	3.6	96.4	0.0	0.07	0.43	0.67	0.87	3.19	23961	3131	13	0	10	0	0	logfile
✔	8GAo	29902	2024-09-30	2023-02-23	4.1	2.86	—	3.7	0.003	0.59	0.0	0.04	12.63	0.00	1.924	12.62	3.47	5.5	94.5	0.0	0.19	0.79	0.76	—	3.8	0.003	0.74	0.0	0.04	13.59	0.00	1.979	14.67	0.04	5.6	94.4	0.0	-0.35	1.28	0.77	0.75	—	23987	2931	16	23	12	0	0	logfile
✔	8U8B	42020	2024-09-30	2023-09-16	3.7	4.26	3.89	4.0	0.004	0.77	0.0	0.05	13.63	0.00	2.238	4.96	0.62	7.3	92.7	0.0	-2.19	0.73	0.63	1.05	4.0	0.002	0.65	0.0	0.04	14.77	0.00	2.496	7.39	1.21	5.1	94.9	0.0	-0.33	0.70	0.82	0.77	0.84	24694	3424	6	2	2	0	0	logfile
✔	5Z1L	6876	2024-09-30	2017-12-26	4.0	3.76	—	4.0	0.004	0.99	0.0	0.07	9.07	0.01	2.380	2.79	0.65	12.5	87.5	0.0	-4.25	0.53	0.79	—	4.0	0.006	0.86	0.0	0.06	14.95	0.00	2.298	6.99	5.34	17.9	82.0	0.0	-2.98	0.64	0.55	0.81	—	25560	3582	18	0	0	0	0	logfile
✔	8EPQ	28533	2024-09-30	2022-10-06	3.3	3.96	3.41	3.0	0.004	0.68	0.0	0.05	14.31	0.00	2.117	7.20	0.12	3.2	96.8	0.0	0.04	0.85	0.83	2.38	3.0	0.006	0.70	0.0	0.05	13.81	0.00	2.432	6.72	1.42	5.5	94.5	0.0	-0.04	0.43	0.86	0.85	2.12	24287	2984	21	0	66	0	0	logfile
✔	7Yi5	33852	2024-09-30	2022-07-14	3.96	7.42	3.88	2.7	0.005	0.66	0.0	0.04	23.56	0.00	2.006	17.91	0.29	4.5	95.5	0.0	0.33	0.87	0.84	0.30	2.7	0.005	0.66	0.0	0.04	23.98	0.00	2.012	15.68	1.53	5.1	94.9	0.0	1.04	1.18	0.87	0.84	0.40	25389	2364	18	302	5	0	0	logfile
✘	8R57	18903	2024-09-30	2023-11-16	2.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25048	1878	29	458	28	357	0	logfile
✘	8SQK	40708	2024-09-30	2023-05-04	3.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25574	1487	16	70	3	131	12229	logfile
✔	8H9L	34572	2024-09-30	2022-10-25	2.61	2.91	2.74	2.9	0.011	0.87	0.0	0.05	14.63	0.01	1.782	7.41	0.00	3.5	96.5	0.0	-2.29	0.75	0.89	4.47	2.9	0.003	0.55	0.0	0.04	16.30	0.00	2.016	5.45	1.02	1.5	98.5	0.0	1.17	0.83	0.69	0.89	3.77	23963	3128	14	0	10	0	0	logfile
✔	8EPN	28531	2024-09-30	2022-10-06	2.8	3.18	2.88	2.9	0.005	0.75	0.0	0.05	18.17	0.00	2.214	6.72	0.84	2.7	97.3	0.0	-0.10	0.84	0.87	2.78	2.9	0.003	0.61	0.0	0.05	14.46	0.00	2.447	4.70	1.38	2.5	97.5	0.0	0.39	0.77	0.84	0.87	1.99	25077	2991	39	0	126	0	0	logfile
✔	8XMT	38488	2024-09-30	2023-12-28	3.31	2.36	3.26	2.2	0.004	0.64	1.0	0.05	13.24	0.01	2.202	10.21	0.11	4.0	95.7	0.3	0.46	0.68	0.72	2.73	2.1	0.005	0.65	0.0	0.05	15.46	0.00	2.514	7.70	3.07	4.9	95.0	0.0	0.07	0.63	0.78	0.80	2.85	24217	3045	6	0	27	0	0	logfile

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