Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VJ7	43276	2024-09-30	2024-01-05	4.85	4.92	4.65	4.7	0.007	0.78	1.0	0.04	14.50	0.01	0.673	6.98	0.48	3.5	96.2	0.3	0.54	0.66	0.67	—	4.6	0.003	0.67	0.0	0.04	13.22	0.00	2.352	11.01	0.00	4.0	95.8	0.2	0.48	2.83	0.71	0.82	—	25175	3186	11	0	4	0	0	logfile
✔	8SoB	40652	2024-09-30	2023-04-28	3.9	4.32	3.96	4.0	0.006	0.63	0.0	0.04	11.26	0.01	1.927	5.49	2.74	7.2	92.7	0.1	0.07	0.86	0.78	1.65	4.0	0.003	0.53	0.0	0.04	13.44	0.00	2.020	4.06	0.96	4.5	95.5	0.0	0.70	1.34	0.87	0.79	1.61	24416	1507	3	0	1	0	12255	logfile
✔	8JM9	36410	2024-09-30	2023-06-04	2.6	2.53	2.63	2.8	0.003	0.47	0.0	0.03	15.46	0.00	2.099	5.71	0.61	1.3	98.7	0.0	3.59	0.45	0.69	2.96	2.8	0.004	0.49	0.0	0.03	15.66	0.00	2.461	2.90	0.91	2.1	97.9	0.0	3.25	0.39	0.57	0.80	3.30	24520	1524	4	0	0	0	12472	logfile
✔	8HZX	35091	2024-09-30	2023-01-09	2.68	2.91	2.72	2.8	0.006	0.77	0.0	0.06	15.72	0.00	2.107	8.72	0.00	6.4	93.4	0.2	-1.13	0.80	0.86	3.94	2.8	0.004	0.62	0.0	0.05	16.31	0.00	2.486	6.21	1.77	7.2	92.6	0.2	-0.42	1.49	0.79	0.86	3.98	25320	3180	6	0	0	0	0	logfile
✔	8TZ3	41732	2024-09-30	2023-08-26	2.31	2.43	2.37	2.5	0.011	0.99	0.0	0.05	16.56	0.01	2.262	1.78	0.00	2.8	97.0	0.2	-3.08	0.62	0.80	5.16	2.5	0.004	0.59	0.0	0.04	16.66	0.00	2.101	2.76	1.19	2.1	97.9	0.0	2.83	0.56	0.62	0.81	4.07	24810	1599	9	0	18	15	12165	logfile
✔	8SML	40590	2024-09-30	2023-04-26	3.3	3.35	3.20	3.3	0.010	1.01	0.0	0.06	11.40	0.01	2.064	1.02	0.14	2.1	97.8	0.1	0.50	0.53	0.68	2.49	3.3	0.004	0.64	0.0	0.04	14.89	0.01	2.053	4.51	2.38	4.2	95.8	0.0	-0.72	1.30	0.55	0.72	3.07	24628	1594	8	0	6	0	12234	logfile
✔	8HRJ	34975	2024-09-30	2022-12-15	3.1	3.46	3.33	3.4	0.003	0.61	0.0	0.05	14.23	0.01	2.203	5.91	0.26	4.9	94.8	0.3	-0.13	0.47	0.42	0.70	3.4	0.003	0.66	0.0	0.04	15.85	0.00	2.394	5.91	1.57	5.5	94.5	0.0	-0.37	1.68	0.65	0.74	1.50	24531	3126	3	0	0	0	0	logfile
✔	8TZ4	41733	2024-09-30	2023-08-26	3.23	3.64	3.38	3.6	0.005	0.43	0.0	0.03	12.31	0.00	2.199	1.96	0.00	0.9	99.1	0.0	3.71	0.63	0.81	2.63	3.6	0.003	0.48	0.0	0.04	14.71	0.00	2.148	3.31	0.71	1.6	98.4	0.0	3.50	1.69	0.65	0.85	2.43	24408	1599	4	0	1	0	12165	logfile
✔	8XM5	38463	2024-09-30	2023-12-27	2.61	2.22	2.60	2.1	0.004	0.64	3.0	0.05	12.96	0.01	2.026	8.16	0.11	4.3	95.6	0.1	0.14	0.78	0.79	3.41	2.0	0.003	0.62	0.0	0.05	15.90	0.00	2.406	7.09	2.25	4.2	95.8	0.0	0.35	1.29	0.78	0.80	3.03	24226	3047	6	0	27	0	0	logfile
✔	8GAF	29896	2024-09-30	2023-02-22	3.64	4.04	—	3.8	0.002	0.43	0.0	0.04	18.19	0.00	2.133	11.26	2.92	15.4	82.2	2.4	-3.53	0.71	0.52	0.12	3.8	0.005	0.88	0.0	0.05	19.58	0.00	2.244	29.22	2.44	11.6	88.2	0.2	-2.77	2.32	0.77	0.68	0.33	24582	2961	13	43	0	0	0	logfile
✔	8iYK	35824	2024-09-30	2023-04-05	2.95	3.32	3.08	3.2	0.003	0.64	1.0	0.05	18.22	0.00	2.066	11.71	7.67	7.1	92.3	0.6	-1.67	0.78	0.87	2.43	3.2	0.004	0.77	4.0	0.05	17.84	0.00	1.964	8.45	5.45	7.1	92.5	0.4	-1.45	0.25	0.78	0.87	2.47	77370	10248	45	0	3	0	0	logfile
✔	8TNU	41426	2024-09-30	2023-08-02	3.36	4.15	3.44	3.8	0.005	0.97	1.0	0.06	14.07	0.01	1.539	4.50	0.00	4.2	95.8	0.0	-1.28	0.84	0.81	1.81	3.8	0.004	0.65	0.0	0.04	13.54	0.00	2.307	7.59	1.38	4.0	96.0	0.0	0.19	0.96	0.85	0.86	1.85	24893	3039	41	0	93	0	0	logfile
✔	8HRi	34974	2024-09-30	2022-12-15	2.9	3.08	2.94	3.1	0.003	0.61	0.0	0.05	14.23	0.01	2.203	5.76	0.26	4.9	94.8	0.3	-0.13	0.39	0.39	0.61	3.1	0.003	0.64	0.0	0.04	16.12	0.01	2.381	5.04	1.21	4.7	95.3	0.0	-0.62	1.09	0.58	0.76	1.45	24531	3126	3	0	0	0	0	logfile
✔	8HSY	35008	2024-09-30	2022-12-20	2.53	2.70	2.54	2.6	0.004	0.71	0.0	0.05	15.46	0.00	2.153	7.52	0.80	6.2	93.6	0.2	-0.75	0.83	0.86	3.64	2.6	0.005	0.67	0.0	0.05	16.33	0.00	2.556	4.89	2.21	7.3	92.5	0.2	-0.38	0.40	0.84	0.88	3.63	25320	3180	6	0	0	0	0	logfile
✘	9B03	44026	2024-09-30	2024-03-11	2.95	3.69	—	3.2	0.005	0.96	0.0	0.06	13.38	0.01	2.097	1.93	0.00	3.0	97.0	0.0	-2.06	0.84	0.83	2.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23896	3020	14	0	12	0	0	logfile
✔	8GC2	29926	2024-09-30	2023-03-01	4.1	4.86	4.16	3.2	0.005	0.81	0.0	0.11	16.86	0.02	2.284	5.92	0.15	4.4	95.6	0.0	-2.39	0.82	0.83	—	3.1	0.004	0.62	0.0	0.04	14.07	0.00	2.343	9.58	0.00	4.5	95.5	0.0	0.45	1.55	0.83	0.85	—	24342	2993	16	0	45	0	0	logfile
✔	8X84	38135	2024-09-30	2023-11-27	3.1	2.99	3.18	3.2	0.004	0.53	0.0	0.03	14.45	0.00	1.976	4.19	0.30	0.8	99.2	0.0	3.21	0.57	0.78	3.16	3.2	0.002	0.44	0.0	0.03	15.25	0.00	2.485	3.62	0.91	1.1	98.9	0.0	3.63	0.47	0.59	0.80	2.83	24534	1524	12	0	6	4	12444	logfile
✔	8RML	19363	2024-09-30	2024-01-08	3.84	4.20	4.01	4.1	0.004	0.60	0.0	0.04	14.77	0.00	2.198	12.94	0.46	3.7	96.3	0.0	0.77	0.65	0.79	1.28	4.1	0.002	0.62	0.0	0.04	15.69	0.00	2.389	8.02	2.78	3.0	97.0	0.0	1.94	0.50	0.64	0.76	1.08	24454	3088	13	0	0	0	0	logfile
✔	8HMF	34898	2024-09-30	2022-12-03	4.6	5.14	4.45	4.5	0.002	0.60	0.0	0.04	14.45	0.00	2.183	11.55	0.04	4.0	95.8	0.2	0.23	0.90	0.79	—	4.5	0.002	0.59	0.0	0.04	14.54	0.00	2.412	10.40	0.00	4.4	95.5	0.2	0.78	0.58	0.91	0.84	—	25330	3135	4	0	2	0	0	logfile
✔	8TZA	41739	2024-09-30	2023-08-26	3.43	3.77	3.63	3.8	0.009	0.51	0.0	0.04	13.22	0.00	2.212	2.55	0.00	1.0	99.0	0.0	4.14	0.61	0.78	2.22	3.8	0.003	0.48	0.0	0.03	14.63	0.00	2.240	3.33	1.28	1.8	98.2	0.0	3.39	0.85	0.64	0.82	2.08	24297	1599	6	0	3	0	12069	logfile

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