Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RA8	24347	2024-09-30	2021-06-30	3.1	3.60	3.34	3.5	0.014	1.51	0.0	0.10	10.53	0.01	2.367	0.87	0.60	1.8	97.9	0.3	-0.04	0.72	0.74	3.47	3.5	0.003	0.61	0.0	0.05	12.57	0.00	2.552	4.02	1.11	1.7	98.2	0.1	0.24	1.61	0.69	0.76	3.30	24036	3405	24	0	54	0	0	logfile
✔	7K8U	22731	2024-09-30	2020-09-27	3.8	4.52	—	4.1	0.010	0.87	2.0	0.05	12.57	0.01	1.449	19.81	0.20	8.2	91.7	0.1	-2.36	0.82	0.85	2.03	4.1	0.003	0.60	0.0	0.04	13.90	0.00	2.406	7.74	1.48	3.7	96.3	0.0	-0.19	0.95	0.81	0.85	1.66	23915	3181	8	0	4	0	0	logfile
✔	7SYo	25535	2024-09-30	2021-11-25	4.6	3.80	4.55	3.8	0.003	0.85	0.0	0.04	22.28	0.01	2.226	5.43	0.05	5.1	94.9	0.0	-2.93	0.62	0.68	—	3.7	0.002	0.60	0.0	0.04	22.16	0.00	2.004	10.09	0.02	5.1	94.9	0.0	-1.31	1.10	0.62	0.69	—	78846	4891	38	1863	2	0	0	logfile
✔	7SYH	25528	2024-09-30	2021-11-25	4.6	3.30	4.36	3.2	0.003	0.79	2.0	0.04	21.81	0.01	2.250	5.14	0.02	5.7	94.2	0.0	-2.97	0.62	0.60	—	3.2	0.005	0.80	0.0	0.04	22.08	0.01	2.063	14.38	0.00	8.6	91.4	0.0	-1.78	1.17	0.63	0.63	—	78761	4891	38	1859	2	0	0	logfile
✔	7FEB	31551	2024-09-30	2021-07-19	2.11	2.54	—	2.6	0.004	0.65	0.0	0.05	15.91	0.01	2.211	11.24	0.30	1.5	98.5	0.0	0.07	0.75	0.82	3.11	2.6	0.002	0.57	0.0	0.04	16.42	0.00	2.207	6.87	1.38	1.9	98.1	0.0	0.98	1.95	0.74	0.84	2.95	24075	3024	9	0	0	0	0	logfile
✔	6XM3	22254	2024-09-30	2020-06-29	2.9	3.02	2.92	3.0	0.013	1.03	3.0	0.07	14.38	0.01	2.233	3.36	0.66	7.4	92.5	0.2	-4.38	0.66	0.86	3.27	3.0	0.003	0.63	0.0	0.05	15.07	0.00	2.349	4.16	1.31	5.0	95.0	0.0	-0.96	0.42	0.70	0.89	2.83	25384	3143	23	0	60	0	0	logfile
✔	7WAF	32384	2024-09-30	2021-12-14	2.52	2.97	2.47	2.8	0.003	0.58	0.0	0.05	13.88	0.00	1.339	7.48	0.11	3.7	96.3	0.1	0.15	0.80	0.87	3.60	2.8	0.003	0.56	0.0	0.04	15.63	0.00	1.889	6.03	1.72	3.7	96.3	0.0	0.42	0.92	0.80	0.90	3.24	24842	3226	16	0	20	0	0	logfile
✘	7WV3	32844	2024-09-30	2022-02-09	2.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25386	2672	18	80	124	0	0	logfile
✔	7JG2	22310	2024-09-30	2020-07-18	3.3	3.72	3.32	3.7	0.003	0.71	2.0	0.05	12.46	0.00	2.039	6.67	0.00	11.8	88.1	0.1	-3.98	0.65	0.62	1.57	3.7	0.003	0.67	0.0	0.04	14.43	0.00	2.363	6.14	1.29	5.8	94.2	0.0	-2.03	1.13	0.73	0.78	2.72	24252	1584	13	0	16	0	11858	logfile
✔	5WSG	6684	2024-09-30	2016-12-07	4.0	4.08	—	4.0	0.015	1.47	46.0	0.08	16.80	0.01	1.580	27.87	1.96	12.5	85.9	1.6	-4.87	0.46	0.55	—	4.0	0.003	0.76	0.0	0.04	17.91	0.00	1.810	10.53	2.99	6.9	92.8	0.3	-0.52	0.89	0.50	0.66	—	76730	8620	53	376	883	0	0	logfile
✔	7SYJ	25530	2024-09-30	2021-11-25	4.8	3.85	4.49	3.7	0.003	0.79	0.0	0.04	21.81	0.01	2.240	5.37	0.02	6.1	93.9	0.0	-2.97	0.71	0.63	—	3.6	0.004	0.72	0.0	0.04	22.06	0.01	1.919	15.34	0.00	8.6	91.4	0.0	-1.73	1.31	0.74	0.69	—	78761	4891	38	1859	2	0	0	logfile
✔	7FEC	31552	2024-09-30	2021-07-19	3.64	3.94	—	3.9	0.004	0.83	0.0	0.06	14.62	0.00	2.217	14.41	0.34	2.7	97.3	0.0	-1.99	0.76	0.83	2.05	3.9	0.004	0.75	1.0	0.05	16.31	0.00	2.216	8.11	1.23	4.1	95.9	0.0	0.08	0.40	0.74	0.80	1.71	24075	3024	9	0	0	0	0	logfile
✔	7CAB	30325	2024-09-30	2020-06-08	3.52	3.75	—	3.7	0.011	0.89	0.0	0.06	10.19	0.00	1.105	13.85	0.82	4.5	95.5	0.0	-3.16	0.77	0.78	3.43	3.7	0.003	0.64	0.0	0.05	12.94	0.00	2.412	7.67	1.45	3.1	96.9	0.0	-0.37	1.22	0.78	0.82	2.94	24978	3087	21	0	60	0	0	logfile
✔	8H3D	34464	2024-09-30	2022-10-08	3.27	3.75	3.39	3.6	0.004	0.59	3.0	0.05	16.86	0.00	2.173	3.86	0.26	6.4	93.6	0.0	-3.11	0.77	0.85	1.54	3.6	0.005	0.64	0.0	0.05	17.16	0.00	2.517	3.39	3.92	7.9	92.1	0.0	-2.95	0.30	0.78	0.87	1.60	24448	3103	6	0	13	0	0	logfile
✔	7SYG	25527	2024-09-30	2021-11-25	4.3	3.38	4.15	3.2	0.003	0.74	0.0	0.04	22.16	0.01	2.257	4.87	0.00	5.1	94.8	0.0	-2.54	0.65	0.65	—	3.2	0.005	0.78	0.0	0.04	22.35	0.01	2.155	13.72	0.05	8.2	91.8	0.0	-1.82	1.10	0.66	0.68	—	78773	4891	38	1859	2	0	0	logfile
✔	7TRJ	26098	2024-09-30	2022-01-29	2.8	3.41	—	3.3	0.003	0.84	0.0	0.05	16.16	0.00	2.080	9.67	6.92	3.6	96.3	0.1	-1.80	0.78	0.82	2.52	3.3	0.004	0.64	0.0	0.04	16.35	0.00	2.479	5.78	3.21	3.6	96.4	0.0	0.94	0.68	0.79	0.85	2.94	25190	3234	10	0	0	0	0	logfile
✔	7ZF2	14696	2024-09-30	2022-03-31	3.86	3.97	3.73	3.9	0.007	0.62	0.0	0.04	13.32	0.00	2.162	10.43	5.77	5.7	94.3	0.0	0.01	0.78	0.86	1.96	3.9	0.003	0.61	0.0	0.04	15.27	0.00	2.509	7.79	4.36	3.5	96.5	0.0	0.39	0.37	0.78	0.85	1.43	23822	3068	7	0	3	0	0	logfile
✔	7US6	26727	2024-09-30	2022-04-23	3.8	3.39	3.16	3.4	0.015	1.49	12.0	0.11	12.01	0.01	2.101	1.86	0.45	2.7	96.9	0.4	0.23	0.72	0.84	5.29	3.4	0.003	0.59	0.0	0.04	12.27	0.00	2.511	2.76	2.37	1.8	98.1	0.1	0.61	0.99	0.74	0.85	4.24	23747	3159	32	0	107	0	0	logfile
✔	7N9B	24255	2024-09-30	2021-06-17	3.8	3.45	—	3.5	0.013	1.41	3.0	0.10	13.97	0.01	2.070	14.41	0.07	3.1	96.9	0.0	-0.41	0.70	0.83	2.26	3.5	0.005	0.66	0.0	0.05	15.57	0.00	2.440	8.91	2.16	4.9	95.1	0.0	-0.33	0.44	0.70	0.81	2.39	24575	3197	5	0	0	0	0	logfile
✘	7Yi4	33851	2024-09-30	2022-07-14	3.96	8.09	3.85	2.7	0.004	0.61	0.0	0.04	23.49	0.00	2.041	12.68	0.10	3.9	96.1	0.0	1.12	0.85	0.82	0.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25351	2359	18	302	5	0	0	logfile

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