Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9FTi	50746	2024-09-28	2024-06-24	3.5	3.01	3.49	3.0	0.005	0.60	0.0	0.04	16.70	0.00	2.028	5.56	0.27	5.7	94.3	0.0	-1.77	0.70	0.80	2.93	3.0	0.005	0.81	1.0	0.05	17.38	0.00	2.388	4.88	4.72	3.5	96.5	0.0	-0.66	0.93	0.68	0.77	2.11	19935	2780	5	0	0	0	0	logfile
✔	9FTH	50745	2024-09-29	2024-06-24	2.9	3.12	2.93	3.1	0.002	0.46	0.0	0.04	15.69	0.00	2.029	3.58	0.00	2.4	97.6	0.0	0.58	0.77	0.88	3.17	3.1	0.004	0.79	0.0	0.04	16.27	0.00	2.386	4.30	2.20	5.1	94.9	0.0	0.31	0.96	0.78	0.89	3.48	22780	3010	5	0	0	0	0	logfile
✔	9FTG	50744	2024-09-29	2024-06-24	3.1	3.38	3.05	3.3	0.003	0.48	0.0	0.04	15.40	0.00	2.032	4.17	0.00	6.2	93.8	0.0	-0.54	0.71	0.90	3.62	3.3	0.002	0.54	0.0	0.04	15.83	0.00	2.374	3.24	2.88	5.9	94.1	0.0	0.29	0.34	0.67	0.89	3.28	21205	2795	10	0	5	0	0	logfile
✔	9FoR	50628	2024-09-23	2024-06-12	2.75	2.54	2.63	2.8	0.012	2.11	5.0	0.10	12.86	0.01	2.496	1.38	3.17	7.4	91.5	1.1	-5.01	0.49	0.92	7.55	2.7	0.003	0.86	0.0	0.04	15.96	0.00	2.632	1.08	1.59	6.4	93.6	0.0	-5.31	0.37	0.53	0.91	6.33	3405	490	10	0	0	0	0	logfile
✔	9FoF	50621	2024-09-23	2024-06-11	2.9	2.55	2.80	3.2	0.011	1.53	6.0	0.08	13.93	0.01	2.332	9.79	1.56	4.2	94.8	1.0	-4.04	0.27	0.57	3.42	2.8	0.006	1.03	0.0	0.05	17.52	0.00	2.580	2.89	2.60	7.6	92.4	0.0	-4.73	1.98	0.51	0.90	5.61	4176	600	12	0	0	0	0	logfile
✔	9FJY	50517	2024-09-27	2024-05-31	3.79	4.12	3.87	4.0	0.004	0.60	0.0	0.04	18.47	0.00	1.723	9.49	0.41	1.7	98.3	0.0	0.26	0.82	0.83	2.23	4.0	0.005	0.72	0.0	0.05	16.91	0.00	1.912	10.63	4.64	2.8	97.2	0.0	0.07	0.97	0.83	0.84	1.71	15968	2010	22	0	24	0	0	logfile
✔	9FJU	50516	2024-09-27	2024-05-31	3.84	4.15	3.89	4.0	0.004	0.61	0.0	0.04	18.81	0.00	1.705	9.90	0.18	2.1	97.9	0.0	0.15	0.82	0.83	1.83	4.0	0.003	0.70	0.0	0.05	17.26	0.00	1.915	9.08	3.23	3.0	97.0	0.0	-0.03	0.43	0.83	0.83	1.61	15968	2010	22	0	24	0	0	logfile
✔	9FJo	50507	2024-09-25	2024-05-31	3.05	3.39	3.10	3.4	0.002	0.52	0.0	0.04	15.85	0.00	2.165	5.36	0.24	2.1	97.9	0.0	-0.37	0.68	0.84	2.73	3.4	0.003	0.59	0.0	0.04	16.66	0.00	2.444	5.62	2.37	2.9	97.1	0.0	0.50	0.29	0.68	0.84	2.35	11466	1452	8	0	8	0	0	logfile
✔	9FJM	50506	2024-09-26	2024-05-31	3.65	3.91	3.68	3.9	0.002	0.57	0.0	0.04	16.75	0.00	1.766	8.19	0.24	1.5	98.5	0.0	-0.30	0.74	0.82	2.24	3.9	0.005	0.70	0.0	0.05	17.27	0.00	1.975	8.53	4.11	3.1	96.9	0.0	0.01	0.95	0.75	0.83	2.02	11772	1487	16	0	16	0	0	logfile
✔	9FGU	50428	2024-09-23	2024-05-25	4.3	4.49	4.25	4.3	0.003	0.72	0.0	0.05	13.96	0.00	2.123	19.81	0.29	4.9	95.1	0.0	-1.32	0.75	0.70	—	4.3	0.004	0.76	0.0	0.05	13.65	0.00	2.525	17.29	0.00	7.1	92.9	0.0	-1.48	1.06	0.76	0.72	—	3241	413	3	0	1	0	0	logfile
✔	9FGT	50424	2024-09-23	2024-05-25	3.8	4.00	3.78	4.0	0.005	0.70	0.0	0.05	14.86	0.00	2.094	7.67	0.00	7.8	92.2	0.0	-1.56	0.72	0.81	2.12	3.9	0.004	0.71	0.0	0.04	15.44	0.00	2.466	6.98	2.57	7.8	92.2	0.0	-1.63	0.39	0.72	0.81	1.84	2921	373	3	0	1	0	0	logfile
✔	9FGS	50420	2024-09-23	2024-05-25	4.0	4.27	4.01	4.2	0.003	0.66	0.0	0.04	13.38	0.00	2.251	10.57	0.00	8.7	91.3	0.0	-1.99	0.78	0.80	—	4.2	0.003	0.66	0.0	0.04	15.53	0.00	2.415	10.57	2.63	8.7	91.1	0.2	-1.64	0.97	0.78	0.81	—	3187	412	3	0	1	0	0	logfile
✔	9FGR	50418	2024-09-23	2024-05-25	4.0	4.21	3.96	4.1	0.003	0.58	0.0	0.04	12.55	0.00	2.176	8.75	0.00	6.4	93.6	0.0	-1.53	0.76	0.82	—	4.1	0.003	0.67	0.0	0.04	14.55	0.00	2.606	7.80	3.19	4.5	95.5	0.0	-1.11	1.01	0.76	0.81	—	3209	412	3	0	1	1	0	logfile
✘	9FFF	50355	2024-09-27	2024-05-23	3.68	4.27	3.58	2.7	0.003	0.65	0.0	0.04	20.68	0.00	2.128	11.90	0.67	4.4	95.5	0.1	0.95	0.83	0.72	0.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15045	2069	4	65	0	0	0	logfile
✔	9FFB	50353	2024-09-28	2024-05-22	3.59	4.32	3.49	3.6	0.013	0.95	0.0	0.06	20.15	0.01	2.015	13.43	0.16	6.4	93.5	0.0	-0.48	0.87	0.81	0.50	3.7	0.013	0.84	0.0	0.04	20.44	0.00	2.005	15.07	3.53	6.2	93.7	0.0	-0.19	0.38	0.87	0.83	0.48	17255	2066	4	42	0	0	0	logfile
✔	9FEF	50340	2024-09-25	2024-05-19	2.98	3.19	3.00	3.2	0.008	0.83	1.0	0.05	16.73	0.01	2.173	6.86	0.58	5.7	94.0	0.3	0.09	0.74	0.86	2.49	3.2	0.003	0.64	0.0	0.04	16.75	0.00	2.565	5.01	2.65	6.1	93.9	0.0	0.61	0.93	0.65	0.86	2.44	11192	1502	5	0	0	0	0	logfile
✔	9FEE	50339	2024-09-24	2024-05-19	3.03	3.26	3.12	3.3	0.004	0.58	0.0	0.05	15.80	0.00	2.225	4.99	0.20	7.5	92.5	0.0	-1.40	0.76	0.87	2.79	3.3	0.003	0.61	0.0	0.05	16.17	0.00	2.558	4.46	3.22	7.2	92.8	0.0	0.06	0.91	0.75	0.86	2.61	9112	1236	4	0	0	0	0	logfile
✔	9FCJ	50317	2024-09-23	2024-05-15	2.7	2.89	2.64	2.9	0.003	0.55	0.0	0.04	16.44	0.00	2.213	4.76	0.56	1.6	98.4	0.0	0.06	0.59	0.86	3.47	2.9	0.003	0.58	0.0	0.04	17.25	0.00	2.569	4.60	1.68	2.4	97.6	0.0	1.37	0.46	0.52	0.85	2.92	3174	389	5	0	2	29	0	logfile
✔	9FAC	50272	2024-09-24	2024-05-10	3.9	3.38	3.90	4.3	0.007	1.17	0.0	0.07	11.94	0.01	2.226	11.78	0.00	3.8	96.2	0.0	-4.35	0.47	0.63	2.06	3.8	0.005	1.18	1.0	0.05	15.32	0.01	2.431	14.20	2.68	9.2	90.8	0.0	-4.40	1.96	0.48	0.66	1.70	8595	585	10	0	5	0	4190	logfile
✔	9FAB	50271	2024-09-24	2024-05-10	3.9	3.54	3.80	3.6	0.010	1.57	0.0	0.07	11.24	0.01	2.042	7.97	0.00	1.7	98.3	0.0	-4.50	0.44	0.68	2.55	3.7	0.003	0.68	0.0	0.05	14.74	0.00	2.507	6.81	2.68	9.4	90.6	0.0	-5.27	1.34	0.45	0.70	2.06	8595	585	10	0	5	0	4190	logfile

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