Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6KiQ	9997	2024-09-27	2019-07-19	3.62	3.66	—	3.8	0.035	3.74	145.0	0.27	19.81	0.04	2.201	12.20	14.75	18.6	70.7	10.7	-6.77	0.58	0.71	1.68	3.5	0.003	0.77	0.0	0.04	17.69	0.01	2.426	7.29	3.48	9.3	90.1	0.6	-2.36	1.74	0.62	0.74	1.07	15093	968	3	0	0	0	7444	logfile
✔	6Kio	9996	2024-09-27	2019-07-19	3.94	4.22	—	3.9	0.035	3.43	48.0	0.22	17.77	0.04	2.231	11.01	8.39	18.6	74.1	7.3	-6.45	0.56	0.66	1.26	3.8	0.003	0.75	0.0	0.04	17.41	0.00	2.377	8.16	2.64	8.2	91.4	0.4	-1.49	1.65	0.65	0.77	1.40	15091	968	3	0	0	0	7442	logfile
✔	6KFK	9974	2024-09-27	2019-07-08	4.1	4.28	—	15.0	0.015	1.99	0.0	0.08	10.94	0.01	1.444	20.13	0.00	8.2	89.5	2.2	-1.03	0.14	0.06	—	6.8	0.004	0.87	0.0	0.05	13.01	0.00	2.304	15.80	0.01	6.9	92.3	0.8	-1.20	1.80	0.23	0.28	—	65076	8844	22	0	0	0	0	logfile
✔	6KFH	9973	2024-09-28	2019-07-07	3.6	3.70	—	3.7	0.007	0.73	0.0	0.05	14.75	0.00	2.027	9.85	0.00	12.3	87.7	0.0	-3.15	0.66	0.82	0.94	3.7	0.003	0.69	0.0	0.04	17.61	0.00	2.435	7.59	3.03	7.8	92.2	0.0	0.11	0.60	0.62	0.82	1.14	20840	2544	8	0	0	0	0	logfile
✔	6KFG	9972	2024-09-29	2019-07-07	3.8	3.91	—	3.9	0.007	0.77	0.0	0.05	14.04	0.00	2.029	13.10	0.67	11.5	88.5	0.0	-4.38	0.63	0.82	1.64	3.9	0.004	0.74	0.0	0.04	16.83	0.00	2.505	9.59	5.64	7.7	92.3	0.0	-0.53	1.37	0.61	0.81	1.47	22264	2704	8	0	0	0	0	logfile
✔	6KFF	9971	2024-09-29	2019-07-07	3.8	3.93	—	3.9	0.004	0.60	0.0	0.04	15.08	0.00	2.029	8.35	0.35	9.2	90.8	0.0	-2.57	0.67	0.82	1.08	3.9	0.003	0.65	0.0	0.04	17.46	0.00	2.527	7.84	4.21	8.1	91.9	0.0	0.11	1.33	0.63	0.82	1.15	21192	2576	8	0	0	0	0	logfile
✔	7CGP	9958	2024-09-26	2020-07-01	3.7	3.87	—	3.8	0.006	0.66	0.0	0.04	15.25	0.00	1.852	10.54	0.53	5.1	94.9	0.0	-2.68	0.68	0.81	1.54	3.8	0.006	0.99	0.0	0.05	18.27	0.00	2.286	13.71	4.74	4.2	95.8	0.0	0.61	1.47	0.69	0.82	1.10	12433	1569	16	0	1	0	0	logfile
✔	6KA4	9954	2024-09-27	2019-06-20	3.4	3.49	—	3.4	0.006	0.82	0.0	0.05	13.68	0.01	2.076	15.29	0.00	5.0	95.0	0.0	-0.10	0.77	0.83	1.80	3.4	0.002	0.57	0.0	0.04	15.85	0.00	2.563	5.46	1.69	3.0	97.0	0.0	1.11	0.44	0.79	0.85	1.06	17500	2136	4	0	0	0	0	logfile
✔	6K9Q	9952	2024-09-30	2019-06-17	3.1	3.28	—	3.5	0.007	1.09	4.0	0.06	11.35	0.01	1.554	9.55	0.29	6.3	93.6	0.1	-3.33	0.51	0.77	2.45	3.5	0.004	0.82	3.0	0.04	14.66	0.00	1.905	13.72	3.81	5.4	94.6	0.0	-1.30	0.56	0.51	0.80	1.87	76902	10451	26	0	0	0	0	logfile
✔	6K9F	9948	2024-09-27	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	7.0	0.004	1.19	0.0	0.05	17.56	0.00	2.378	21.33	4.75	1.7	98.3	0.0	-0.24	3.84	0.68	0.84	0.41	8484	1044	12	0	0	0	0	logfile
✔	6K99	9947	2024-09-27	2019-06-14	4.1	6.62	4.25	6.7	0.003	0.72	0.0	0.04	12.51	0.00	2.388	7.15	1.46	7.6	92.4	0.0	-2.97	0.73	0.83	—	6.7	0.003	0.97	0.0	0.05	13.00	0.00	2.346	14.55	0.00	7.2	92.8	0.0	-1.70	1.40	0.75	0.88	—	8244	996	12	0	0	0	0	logfile
✔	6K7L	9939	2024-09-25	2019-06-07	2.83	2.93	2.65	2.9	0.012	1.15	0.0	0.07	15.83	0.01	1.976	4.79	0.17	7.5	92.3	0.2	-3.27	0.58	0.83	3.57	2.9	0.003	0.65	0.0	0.04	16.68	0.00	1.954	6.62	1.48	5.6	94.4	0.0	-0.09	0.42	0.71	0.86	2.99	10615	1317	5	0	8	0	0	logfile
✔	6K7K	9937	2024-09-25	2019-06-07	3.04	3.15	2.84	3.1	0.011	1.45	0.0	0.07	15.37	0.01	2.000	5.46	0.35	7.1	92.9	0.0	-3.51	0.63	0.85	3.58	3.1	0.003	0.64	0.0	0.04	16.18	0.00	1.926	7.05	1.91	5.5	94.5	0.0	-0.22	0.94	0.69	0.87	3.09	10586	1309	5	0	10	0	0	logfile
✔	6K7J	9935	2024-09-25	2019-06-07	3.08	3.21	2.88	3.2	0.013	1.23	0.0	0.07	15.54	0.01	2.159	5.68	0.17	8.6	91.2	0.2	-3.98	0.57	0.82	3.51	3.2	0.004	0.66	0.0	0.05	16.35	0.00	2.268	7.47	1.91	6.0	93.9	0.1	-1.03	0.91	0.67	0.84	3.12	10602	1311	5	0	8	0	0	logfile
✔	6K7i	9934	2024-09-25	2019-06-07	3.22	3.34	3.11	3.3	0.015	1.31	0.0	0.08	15.64	0.01	2.253	5.97	0.78	8.9	90.7	0.4	-4.41	0.60	0.84	3.87	3.3	0.003	0.66	0.0	0.04	16.04	0.00	2.522	7.38	1.65	5.9	94.1	0.0	-0.92	0.44	0.68	0.82	2.98	10590	1310	5	0	7	0	0	logfile
✔	6K42	9912	2024-09-24	2019-05-23	4.1	4.04	—	4.1	0.005	0.82	0.0	0.05	9.24	0.01	2.288	4.50	0.31	5.4	94.6	0.0	-4.37	0.60	0.63	—	4.0	0.004	0.77	0.0	0.04	13.17	0.00	2.453	11.63	0.21	5.4	94.6	0.0	-1.43	2.64	0.66	0.74	—	8816	1116	6	0	1	0	0	logfile
✔	6K41	9911	2024-09-24	2019-05-23	2.9	2.88	—	2.9	0.009	1.07	0.0	0.06	10.21	0.01	2.166	3.99	0.44	5.1	94.9	0.0	-2.62	0.73	0.85	4.09	2.9	0.003	0.62	0.0	0.04	14.88	0.00	2.491	5.54	3.50	3.7	96.3	0.0	0.86	0.62	0.75	0.83	3.63	8430	1077	6	0	1	0	0	logfile
✔	6K1H	9906	2024-09-26	2019-05-10	3.52	3.52	—	3.5	0.007	0.98	0.0	0.05	15.20	0.01	1.774	20.26	0.90	13.3	86.5	0.2	-4.44	0.64	0.82	1.93	3.5	0.004	0.78	0.0	0.04	15.46	0.01	2.498	12.25	4.33	8.9	91.1	0.0	-1.79	1.48	0.64	0.81	1.81	11769	1560	9	0	3	0	0	logfile
✔	6K15	9905	2024-09-29	2019-05-09	3.4	3.68	—	3.6	0.005	0.96	0.0	0.05	10.23	0.01	1.639	5.00	0.33	8.6	91.3	0.1	-4.21	0.74	0.78	2.17	3.6	0.003	0.69	0.0	0.04	15.04	0.00	2.387	7.28	2.18	7.4	92.6	0.0	-0.25	1.74	0.76	0.81	1.36	21486	2655	14	0	1	0	0	logfile
✔	6K0B	9900	2024-09-30	2019-05-05	4.3	4.49	—	4.2	0.003	0.78	0.0	0.04	22.12	0.01	2.011	5.73	0.66	6.1	93.9	0.0	-3.67	0.84	0.69	—	4.2	0.003	0.68	0.0	0.04	22.38	0.01	2.133	16.29	0.00	7.6	92.4	0.0	-0.88	1.79	0.88	0.79	—	25908	1376	16	682	2	0	0	logfile

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