Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6JXR	9895	2024-09-24	2019-04-24	3.7	3.95	—	3.9	0.008	1.01	0.0	0.06	10.83	0.01	2.273	5.82	0.74	7.2	92.6	0.2	-3.45	0.69	0.78	2.74	3.9	0.004	0.73	0.0	0.04	15.79	0.00	2.491	9.95	4.25	6.4	93.6	0.0	-0.30	1.71	0.66	0.79	2.24	8437	1073	8	0	0	0	0	logfile
✔	6JXC	9893	2024-09-27	2019-04-23	4.1	4.20	—	4.1	0.018	1.71	0.0	0.09	8.99	0.01	2.221	4.77	0.38	9.3	87.7	3.0	-1.28	0.50	0.61	—	4.1	0.003	0.81	0.0	0.04	12.05	0.00	2.429	8.21	0.00	11.6	86.6	1.8	0.01	1.00	0.55	0.69	—	15270	2345	1	0	0	0	0	logfile
✔	6JXA	9892	2024-09-26	2019-04-23	4.3	4.65	—	4.2	0.017	1.81	3.0	0.10	9.08	0.01	1.926	29.72	2.04	12.2	79.3	8.5	-2.72	0.49	0.42	—	4.2	0.006	1.12	0.0	0.05	11.68	0.01	2.387	23.91	0.00	16.8	80.2	2.9	-2.98	0.96	0.65	0.60	—	14100	2244	1	0	0	0	0	logfile
✔	6KUV	9888	2024-09-26	2019-09-02	4.1	4.13	—	4.1	0.003	0.79	0.0	0.05	11.91	0.01	2.206	6.18	0.28	7.4	92.5	0.2	-4.84	0.69	0.72	—	4.1	0.003	0.74	0.0	0.04	14.91	0.00	2.401	7.76	0.00	6.9	93.1	0.1	-1.10	2.91	0.73	0.76	—	13720	1640	5	23	0	0	0	logfile
✔	6JT2	9885	2024-09-24	2019-04-08	3.8	3.88	—	3.8	0.004	0.74	0.0	0.04	11.36	0.01	1.980	10.08	3.54	4.0	95.7	0.3	-2.54	0.80	0.80	2.23	3.8	0.003	0.69	0.0	0.04	13.65	0.00	1.918	8.36	2.95	3.9	96.1	0.0	0.58	1.65	0.82	0.81	1.33	8191	1075	4	0	4	0	0	logfile
✔	6JT1	9884	2024-09-24	2019-04-08	3.9	4.00	—	3.9	0.004	0.77	0.0	0.04	12.20	0.00	2.212	10.33	4.62	5.8	93.8	0.4	-2.92	0.77	0.81	2.21	3.9	0.003	0.78	0.0	0.04	14.17	0.00	2.315	10.10	3.30	4.8	95.1	0.1	0.10	1.20	0.81	0.82	1.88	8602	1118	3	0	1	0	0	logfile
✔	6JT0	9883	2024-09-24	2019-04-08	4.0	4.28	—	4.0	0.004	0.71	0.0	0.04	12.21	0.00	2.212	11.03	4.73	5.7	93.9	0.4	-2.84	0.85	0.82	—	4.0	0.004	1.06	1.0	0.05	13.91	0.00	1.860	12.57	2.09	3.9	96.1	0.0	0.35	1.27	0.86	0.82	—	8602	1118	3	0	1	0	0	logfile
✔	6JSi	9882	2024-09-27	2019-04-08	4.7	4.70	—	4.6	0.007	1.48	0.0	0.06	15.33	0.01	2.231	10.68	2.42	23.2	72.3	4.5	-6.05	0.64	0.72	—	4.6	0.004	1.03	0.0	0.05	13.24	0.01	2.404	14.15	0.00	24.1	74.2	1.7	-4.86	0.63	0.63	0.70	—	62820	5844	15	0	4044	0	0	logfile
✔	6JPB	9869	2024-09-29	2019-03-26	2.9	3.09	—	3.1	0.015	1.48	3.0	0.12	16.40	0.01	1.739	21.16	4.38	8.5	91.1	0.4	-4.25	0.61	0.77	2.33	3.1	0.003	0.75	0.0	0.04	15.78	0.00	1.823	6.21	1.95	4.9	95.1	0.0	-0.16	1.38	0.62	0.82	2.33	21989	2694	14	0	35	0	0	logfile
✔	6JP8	9867	2024-09-29	2019-03-26	2.7	2.51	—	2.6	0.013	1.48	8.0	0.12	16.09	0.01	1.877	25.96	6.07	7.2	92.3	0.5	-4.05	0.38	0.52	1.99	2.5	0.004	0.94	2.0	0.06	16.13	0.00	2.253	8.33	2.82	4.6	95.4	0.0	-0.30	1.38	0.47	0.72	2.16	21801	2694	14	0	29	0	0	logfile
✔	6JP5	9866	2024-09-29	2019-03-25	2.9	3.03	—	3.1	0.016	1.54	4.0	0.13	16.26	0.01	1.921	28.83	6.11	7.7	91.7	0.6	-3.65	0.56	0.62	2.05	3.0	0.003	0.71	0.0	0.04	15.28	0.00	2.309	5.80	1.69	5.0	95.0	0.0	0.16	0.79	0.65	0.83	1.82	22068	2694	14	0	39	0	0	logfile
✔	6JNF	9851	2024-09-24	2019-03-14	3.81	3.96	3.73	4.0	0.009	1.23	0.0	0.06	17.48	0.01	2.304	5.24	1.02	16.7	83.3	0.0	-6.16	0.64	0.82	1.38	4.0	0.005	1.23	0.0	0.05	18.31	0.01	2.469	8.96	4.73	13.1	86.9	0.0	-2.36	1.46	0.68	0.83	1.39	7271	924	11	0	1	0	0	logfile
✘	6JMR	9850	2024-09-25	2019-03-13	4.1	4.26	4.05	4.1	0.007	1.06	0.0	0.06	14.10	0.01	2.239	7.77	0.56	7.1	92.8	0.1	-4.05	0.83	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9809	1223	12	0	69	0	0	logfile
✔	6JMQ	9849	2024-09-25	2019-03-13	3.31	3.52	3.25	3.5	0.005	0.96	0.0	0.05	14.03	0.01	2.293	3.84	0.29	4.3	95.6	0.1	-5.03	0.71	0.79	2.84	3.5	0.003	0.70	0.0	0.04	14.81	0.00	2.510	7.13	3.17	3.8	96.1	0.1	-1.20	1.44	0.75	0.83	2.64	9950	1223	12	0	74	0	0	logfile
✔	6JND	9848	2024-09-23	2019-03-14	3.9	3.92	—	3.9	0.006	0.82	0.0	0.05	15.64	0.01	2.316	3.79	11.73	5.8	94.2	0.0	-5.73	0.43	0.77	1.85	3.9	0.003	0.64	0.0	0.05	16.37	0.00	2.520	4.85	1.47	3.6	96.4	0.0	-1.20	1.26	0.48	0.87	1.71	3294	419	2	0	1	0	0	logfile
✔	6JNC	9847	2024-09-23	2019-03-14	3.7	3.76	—	3.8	0.009	0.87	0.0	0.05	14.72	0.01	2.304	3.18	9.09	4.8	95.2	0.0	-5.69	0.46	0.78	1.61	3.8	0.004	0.61	0.0	0.05	16.08	0.00	2.531	3.94	1.47	3.4	96.6	0.0	-1.19	0.88	0.51	0.89	2.11	3294	419	2	0	1	0	0	logfile
✔	6Ji1	9832	2024-09-26	2019-02-19	4.1	4.20	—	4.1	0.010	1.26	0.0	0.06	11.77	0.01	2.250	7.50	0.57	11.2	83.5	5.3	-4.78	0.61	0.71	—	4.1	0.003	0.76	0.0	0.04	12.85	0.01	2.561	9.97	0.00	6.3	93.0	0.7	-0.77	0.86	0.56	0.70	—	13992	1848	4	0	0	0	0	logfile
✔	6JD1	9801	2024-09-27	2019-01-30	3.38	4.55	—	3.9	0.013	1.00	0.0	0.05	16.01	0.00	2.005	6.39	0.00	7.3	92.7	0.0	-4.95	0.85	0.70	1.18	4.0	0.003	0.64	0.0	0.04	15.93	0.00	1.880	8.70	1.06	5.3	94.7	0.0	-1.48	0.98	0.88	0.84	1.68	63427	3953	36	0	60	192	31469	logfile
✔	6JCZ	9800	2024-09-27	2019-01-30	3.35	4.22	—	3.7	0.006	0.81	0.0	0.04	15.49	0.00	1.670	3.80	0.00	6.8	93.2	0.0	-5.41	0.85	0.74	2.43	3.8	0.003	0.67	0.0	0.04	16.61	0.00	1.824	5.29	1.52	4.4	95.6	0.0	-1.95	3.27	0.86	0.83	2.34	63476	3959	36	0	48	99	31525	logfile
✔	6JC3	9793	2024-09-23	2019-01-28	4.8	4.87	—	4.8	0.010	1.35	2.0	0.07	16.29	0.01	1.512	30.30	3.10	10.1	89.1	0.8	-4.39	0.42	0.78	—	4.7	0.003	0.70	0.0	0.04	14.57	0.00	2.547	9.94	0.00	4.9	95.1	0.0	0.86	4.20	0.43	0.81	—	3154	391	2	6	0	0	0	logfile

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