Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Z9F	11122	2024-09-29	2020-06-03	1.56	1.61	1.61	1.6	0.015	1.74	48.0	0.10	15.51	0.01	1.782	5.46	3.66	1.7	98.3	0.0	2.70	0.68	0.69	8.63	1.6	0.004	0.72	0.0	0.04	15.17	0.01	2.247	3.34	3.02	1.8	98.2	0.0	4.53	0.91	0.84	0.86	8.47	41020	4152	72	0	32	4172	0	logfile
✔	6S61	10101	2024-09-28	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.62	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.004	0.62	0.0	0.04	14.89	0.00	2.160	2.50	0.65	1.3	98.7	0.0	4.32	0.78	0.80	0.90	8.67	71060	4128	72	0	30	3854	32904	logfile
✔	7A6A	11668	2024-09-29	2020-08-25	1.15	1.13	—	1.2	0.018	1.70	24.0	0.16	14.68	0.01	1.857	3.78	3.03	1.2	98.8	0.0	2.45	0.47	0.61	9.02	1.2	0.003	0.60	0.0	0.04	14.88	0.00	2.244	1.45	1.82	1.8	98.2	0.0	4.83	0.41	0.69	0.81	8.90	41613	4152	72	0	32	4621	0	logfile
✔	7N65	24195	2024-09-29	2021-06-07	4.15	4.35	—	4.2	0.011	1.36	0.0	0.07	20.89	0.01	1.935	36.06	4.29	15.2	84.6	0.2	-4.44	0.78	0.77	—	4.2	0.004	0.93	0.0	0.05	12.75	0.01	2.197	18.07	0.05	11.4	88.6	0.0	-2.89	1.52	0.77	0.76	—	21525	2454	72	0	189	0	0	logfile
✔	8EMQ	28259	2024-09-27	2022-09-28	1.66	1.59	1.68	1.6	0.011	1.31	0.0	0.07	15.25	0.01	0.733	5.98	1.91	0.6	99.4	0.0	2.37	0.66	0.78	9.05	1.6	0.004	0.67	0.0	0.04	14.73	0.01	2.110	3.28	0.64	1.8	98.2	0.0	5.21	0.42	0.82	0.89	8.89	37805	4128	72	0	30	2975	0	logfile
✘	7A6B	11669	2024-09-29	2020-08-25	1.33	1.21	—	1.3	0.015	1.60	24.0	0.12	16.78	0.01	1.893	4.97	4.17	1.2	98.8	0.0	2.52	0.52	0.65	9.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	41494	4152	72	0	32	3854	0	logfile
✔	8SZZ	40926	2024-09-23	2023-05-30	2.9	3.06	2.89	3.0	0.005	0.71	0.0	0.05	14.17	0.01	2.197	3.30	0.43	1.5	98.5	0.0	-1.08	0.72	0.85	3.42	3.0	0.003	0.52	0.0	0.04	17.37	0.00	2.305	3.90	1.15	1.7	98.3	0.0	2.36	0.48	0.74	0.87	3.00	48815	6504	72	0	24	0	0	logfile
✔	7RRP	24665	2024-09-28	2021-08-10	1.27	1.32	—	1.4	0.003	0.61	0.0	0.04	14.22	0.00	2.007	2.86	0.00	2.4	97.6	0.0	4.01	0.63	0.76	9.05	1.4	0.003	0.57	0.0	0.04	14.38	0.00	2.069	1.76	0.91	2.4	97.6	0.0	4.27	0.07	0.70	0.83	9.05	72254	4128	72	0	278	2496	34080	logfile
✔	8HJU	34838	2024-09-30	2022-11-23	2.8	2.56	2.77	2.8	0.020	2.08	1.0	0.40	20.78	0.03	1.827	25.04	0.66	3.6	96.3	0.0	-0.29	0.65	0.84	3.31	2.7	0.006	0.86	0.0	0.04	18.57	0.00	1.899	11.74	2.03	4.1	95.9	0.0	1.97	1.20	0.66	0.86	3.43	23917	2330	71	0	97	0	0	logfile
✔	7VoY	32062	2024-09-29	2021-10-15	4.2	3.14	—	3.1	0.009	0.97	0.0	0.10	14.58	0.01	2.056	16.17	1.25	4.6	95.4	0.0	0.99	0.45	0.66	—	3.1	0.005	0.83	0.0	0.04	14.90	0.00	2.462	12.18	0.00	4.0	96.0	0.0	1.12	0.68	0.45	0.68	—	22119	2479	71	0	44	0	0	logfile
✔	8RDU	19075	2024-09-26	2023-12-08	2.3	2.53	—	2.6	0.006	0.89	0.0	0.06	19.92	0.01	1.739	3.45	0.77	2.7	97.3	0.0	-1.13	0.69	0.77	4.20	2.6	0.005	0.70	0.0	0.04	21.41	0.01	1.835	7.82	2.18	2.6	97.4	0.0	0.89	0.86	0.68	0.81	3.26	61430	6103	71	526	33	862	0	logfile
✔	8GZ8	34392	2024-09-23	2022-09-26	2.35	2.27	2.10	2.5	0.005	0.73	0.0	0.06	14.15	0.00	2.500	6.32	0.00	0.5	99.5	0.0	-0.71	0.43	0.88	4.53	2.6	0.004	0.61	0.0	0.06	15.00	0.00	2.653	3.79	3.57	1.1	98.9	0.0	-0.72	0.87	0.42	0.89	4.58	3336	540	71	0	0	20	0	logfile
✔	5FUU	3308	2024-09-28	2016-01-29	4.19	4.30	—	4.2	0.014	1.86	3.0	0.12	17.63	0.02	1.862	17.37	1.20	6.2	92.2	1.7	-2.38	0.69	0.72	—	4.2	0.003	0.87	0.0	0.05	11.85	0.00	2.337	11.80	0.05	6.8	92.7	0.4	-1.12	0.95	0.76	0.82	—	20735	2281	70	0	213	0	0	logfile
✔	6HXX	0297	2024-09-27	2018-10-18	3.4	3.76	3.51	3.7	0.008	1.14	0.0	0.07	13.79	0.01	1.586	8.35	0.28	8.1	91.9	0.0	-3.79	0.53	0.84	2.51	3.7	0.003	0.68	0.0	0.04	16.95	0.00	2.413	10.14	2.25	7.5	92.5	0.0	-0.30	1.24	0.56	0.86	2.11	65765	7840	70	175	0	0	0	logfile
✔	8JoU	36462	2024-09-26	2023-06-08	4.1	6.13	3.95	3.9	0.004	0.83	0.0	0.05	12.09	0.01	0.759	16.82	0.49	7.7	90.4	1.9	-1.54	0.17	0.37	—	3.1	0.003	0.72	0.0	0.04	11.95	0.00	2.407	17.46	0.00	8.3	90.0	1.6	-1.66	2.31	0.23	0.86	—	62425	8135	70	0	590	0	0	logfile
✔	8J5P	35989	2024-09-30	2023-04-24	3.1	2.73	3.16	2.9	0.007	1.02	0.0	0.04	18.34	0.01	2.107	17.84	0.30	3.5	96.5	0.0	2.11	0.66	0.85	2.14	2.9	0.006	0.88	0.0	0.05	18.34	0.01	1.970	6.41	2.08	4.9	95.1	0.0	2.02	1.34	0.67	0.87	2.03	23737	2331	70	0	92	0	0	logfile
✘	8BKZ	16099	2024-09-28	2022-11-09	2.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67875	8680	70	0	42	3505	0	logfile
✔	5ACo	3121	2024-09-29	2015-08-17	4.36	4.52	—	4.3	0.012	1.98	3.0	0.11	17.67	0.02	1.986	10.73	0.29	9.1	88.9	1.9	-2.40	0.70	0.68	—	4.3	0.005	0.83	0.0	0.05	11.29	0.00	2.334	10.51	0.00	7.1	92.5	0.5	-0.96	1.60	0.82	0.84	—	21297	2415	69	0	192	0	0	logfile
✔	8J5o	35988	2024-09-30	2023-04-24	2.9	2.76	3.09	2.9	0.007	0.98	1.0	0.04	17.27	0.01	1.849	18.76	0.00	3.2	96.8	0.0	2.71	0.66	0.87	2.50	2.9	0.005	0.81	0.0	0.04	17.55	0.01	1.950	5.51	0.97	4.3	95.7	0.0	2.32	0.33	0.66	0.89	2.25	23692	2318	69	0	93	0	0	logfile
✘	7ZHG	14731	2024-09-26	2022-04-06	2.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64278	3601	69	1533	96	2083	0	logfile

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