Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NJL	12382	2024-09-29	2021-02-17	2.71	2.49	—	2.2	0.003	0.51	0.0	0.04	15.07	0.00	2.057	6.48	0.00	2.4	97.6	0.0	1.54	0.85	0.86	3.77	2.2	0.003	0.54	0.0	0.04	16.38	0.00	1.788	5.12	0.62	2.7	97.2	0.0	1.27	0.90	0.86	0.88	3.78	74775	4944	31	0	11	16	37414	logfile
✘	8TVY	41655	2024-09-30	2023-08-18	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	76945	4692	23	103	9	0	37409	logfile
✔	7NJK	12377	2024-09-29	2021-02-17	2.52	2.49	—	2.2	0.004	0.51	0.0	0.04	14.88	0.00	2.061	4.73	0.00	2.4	97.6	0.1	1.64	0.85	0.87	4.35	2.2	0.004	0.56	0.0	0.04	15.95	0.00	1.771	4.03	0.23	1.8	98.2	0.0	2.11	1.69	0.86	0.89	4.03	74650	4934	31	0	11	16	37359	logfile
✔	7NJQ	12407	2024-09-29	2021-02-17	2.67	2.56	—	2.2	0.004	0.52	0.0	0.04	14.82	0.00	1.901	5.62	0.00	2.1	97.8	0.1	1.78	0.85	0.87	4.10	2.2	0.005	0.55	0.0	0.04	16.03	0.00	1.745	4.32	0.70	2.7	97.2	0.1	1.22	0.34	0.86	0.89	4.23	74669	4936	31	0	11	16	37357	logfile
✔	7NJS	12417	2024-09-29	2021-02-17	2.46	2.50	—	2.2	0.002	0.50	0.0	0.04	16.98	0.00	1.978	4.14	1.22	1.7	98.3	0.0	2.22	0.85	0.88	4.05	2.2	0.004	0.53	0.0	0.04	16.95	0.00	1.779	3.32	1.14	2.6	97.4	0.0	1.68	0.26	0.86	0.90	4.03	74642	4932	31	0	11	16	37346	logfile
✔	7NJo	12397	2024-09-29	2021-02-17	2.92	2.77	—	2.7	0.004	0.53	0.0	0.04	15.21	0.00	2.080	8.25	0.00	2.9	97.1	0.0	1.46	0.85	0.85	3.17	2.7	0.005	0.58	0.0	0.04	16.65	0.00	1.749	6.85	0.81	3.1	96.9	0.0	1.32	0.37	0.86	0.88	3.17	74641	4934	31	0	11	16	37345	logfile
✔	7NJM	12387	2024-09-29	2021-02-17	2.84	2.63	—	2.7	0.003	0.50	0.0	0.04	15.19	0.00	1.935	6.68	0.00	2.7	97.3	0.0	1.41	0.85	0.86	3.49	2.7	0.004	0.66	1.0	0.04	16.55	0.00	1.779	5.42	0.60	2.2	97.8	0.0	1.86	0.91	0.86	0.88	3.26	74611	4932	31	0	11	16	37328	logfile
✔	7NJR	12412	2024-09-29	2021-02-17	2.56	2.54	—	2.4	0.004	0.52	0.0	0.04	14.80	0.00	1.940	5.25	0.00	3.0	96.9	0.1	1.36	0.85	0.87	4.22	2.1	0.004	0.61	0.0	0.04	15.88	0.00	1.816	4.38	0.60	3.2	96.7	0.1	1.48	0.89	0.86	0.89	3.94	74587	4930	31	0	11	16	37321	logfile
✔	7NJP	12402	2024-09-29	2021-02-17	2.84	2.89	—	2.7	0.003	0.50	0.0	0.04	14.73	0.00	2.035	6.55	0.00	2.3	97.7	0.0	1.92	0.86	0.86	3.44	2.7	0.006	0.58	0.0	0.04	15.71	0.00	1.696	5.20	0.29	3.3	96.7	0.0	1.26	0.91	0.86	0.88	3.36	74554	4929	31	0	11	16	37305	logfile
✔	7NJN	12392	2024-09-29	2021-02-17	2.64	2.61	—	2.0	0.004	0.52	0.0	0.04	14.88	0.00	1.931	6.46	0.00	2.3	97.6	0.1	1.48	0.85	0.87	3.94	2.0	0.003	0.53	0.0	0.04	16.07	0.00	1.801	4.91	0.49	2.6	97.3	0.1	1.33	0.90	0.86	0.89	3.91	74548	4927	31	0	11	16	37299	logfile
✔	6VFX	21194	2024-09-29	2020-01-06	2.9	3.10	—	3.1	0.003	0.60	0.0	0.04	10.94	0.00	2.112	2.11	0.10	3.6	96.4	0.0	-1.34	0.59	0.59	2.34	3.1	0.003	0.65	0.0	0.04	17.07	0.00	1.719	7.18	1.48	3.5	96.5	0.0	0.24	1.59	0.69	0.80	2.26	73348	4682	27	0	18	0	36896	logfile
✔	8UB3	42075	2024-09-28	2023-09-22	3.3	3.17	3.38	3.1	0.005	0.69	0.0	0.04	9.45	0.01	2.321	4.56	0.00	0.0	100.0	0.0	3.84	0.45	0.71	2.58	3.2	0.003	0.40	0.0	0.03	14.71	0.00	2.490	4.96	1.54	0.5	99.5	0.0	6.34	0.70	0.47	0.74	1.79	71260	4480	20	0	0	0	36780	logfile
✔	8F0U	28781	2024-09-29	2022-11-04	3.1	3.37	3.22	3.6	0.031	1.77	0.0	0.13	9.86	0.01	2.388	0.67	0.00	0.8	99.2	0.0	0.72	0.31	0.31	0.91	3.5	0.003	0.63	0.0	0.05	14.17	0.00	2.204	5.16	1.49	5.0	95.0	0.0	-0.77	2.15	0.54	0.68	1.69	72240	4848	36	0	0	0	36756	logfile
✔	6MDM	9100	2024-09-29	2018-09-04	4.4	8.28	—	4.2	0.013	1.55	1.0	0.09	12.23	0.01	1.944	4.73	0.10	3.9	95.8	0.3	-3.62	0.88	0.72	—	4.2	0.005	0.71	0.0	0.06	12.57	0.00	2.198	16.85	0.03	8.2	91.8	0.0	-1.92	0.81	0.94	0.85	—	73171	4651	17	0	11	0	36604	logfile
✔	6MDN	9101	2024-09-29	2018-09-04	4.4	8.07	—	4.0	0.016	1.67	1.0	0.12	12.42	0.01	1.938	6.70	0.38	2.8	96.9	0.2	-3.67	0.87	0.70	—	3.9	0.004	0.66	0.0	0.06	12.44	0.00	2.230	13.68	0.03	7.2	92.8	0.0	-1.33	0.84	0.93	0.83	—	72910	4632	17	0	11	0	36496	logfile
✔	6VFS	21187	2024-09-28	2020-01-06	3.3	3.50	—	3.5	0.004	0.71	0.0	0.04	11.05	0.00	2.062	1.79	0.13	2.9	97.1	0.0	-0.56	0.60	0.53	1.84	3.4	0.006	0.74	1.0	0.04	16.06	0.00	1.661	10.21	1.64	4.7	95.3	0.0	0.03	1.98	0.72	0.78	1.48	71827	4576	27	0	17	0	36156	logfile
✔	8RNC	19394	2024-09-28	2024-01-09	3.52	3.95	3.79	3.8	0.002	0.51	1.0	0.04	16.41	0.00	1.788	8.46	0.33	4.7	95.2	0.1	0.38	0.72	0.73	1.26	3.8	0.003	0.60	0.0	0.04	17.26	0.00	2.249	8.08	1.51	5.0	95.0	0.1	-0.16	1.05	0.72	0.77	1.39	71539	4477	9	0	0	0	35901	logfile
✔	8B0H	15781	2024-09-29	2022-09-07	3.3	3.48	3.37	3.4	0.004	0.87	2.0	0.05	15.38	0.01	1.853	8.69	0.56	5.1	94.9	0.0	-0.65	0.67	0.79	2.70	3.4	0.004	0.72	0.0	0.04	15.68	0.00	2.193	6.73	1.36	4.3	95.7	0.0	-0.28	0.54	0.69	0.83	2.50	72850	4703	9	0	0	0	35735	logfile
✔	6B6H	7059	2024-09-29	2017-10-02	3.9	4.15	—	3.7	0.008	0.96	0.0	0.05	16.11	0.01	1.944	6.23	0.03	8.9	91.0	0.2	-4.47	0.71	0.48	1.58	3.8	0.004	0.67	0.0	0.04	17.45	0.00	1.124	8.45	0.86	9.0	90.9	0.0	-1.51	1.54	0.85	0.69	1.29	72070	4188	15	178	6	0	35400	logfile
✔	7L06	23095	2024-09-29	2020-12-11	3.3	3.96	—	3.6	0.014	1.65	2.0	0.15	14.80	0.02	1.245	3.42	0.87	3.8	96.2	0.0	-0.59	0.81	0.73	1.86	3.6	0.004	0.62	0.0	0.05	13.80	0.00	2.130	5.62	1.04	4.8	95.2	0.0	-0.46	1.42	0.84	0.80	2.06	71940	4636	28	0	77	0	35068	logfile

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