Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6PCS	20306	2024-09-28	2019-06-18	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72169	967	8	3015	1	0	0	logfile
✘	6PCT	20307	2024-09-28	2019-06-18	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72198	964	8	3015	1	0	0	logfile
✘	6PCH	20300	2024-09-28	2019-06-17	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72134	964	8	3015	1	0	0	logfile
✘	6PCQ	20304	2024-09-28	2019-06-18	2.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72125	963	8	3015	1	0	0	logfile
✘	7ASN	11901	2024-09-30	2020-10-27	2.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	80694	2545	25	2848	0	0	0	logfile
✔	6WQQ	21873	2024-09-30	2020-04-29	3.1	2.53	3.04	3.0	0.002	0.45	2.0	0.03	22.73	0.00	2.203	3.54	0.36	3.9	96.1	0.0	-4.07	0.73	0.80	2.74	3.0	0.004	0.71	0.0	0.04	23.32	0.01	1.968	4.74	5.33	6.5	93.5	0.0	-2.80	0.32	0.74	0.82	2.54	81134	2671	28	2809	1	0	0	logfile
✔	6WRS	21887	2024-09-30	2020-04-30	3.2	2.79	3.14	3.1	0.008	0.92	10.0	0.06	24.02	0.00	2.100	6.48	3.63	7.4	92.6	0.0	-3.55	0.62	0.78	2.86	3.1	0.005	0.80	1.0	0.04	23.54	0.01	2.157	4.34	7.58	7.2	92.8	0.0	-2.84	0.37	0.72	0.84	2.33	81115	2669	28	2809	1	0	0	logfile
✔	7TTW	26125	2024-09-30	2022-02-02	2.9	2.35	2.83	2.8	0.003	0.54	0.0	0.03	22.87	0.00	2.065	3.74	0.04	4.3	95.7	0.0	-2.03	0.71	0.80	3.36	2.8	0.004	0.71	0.0	0.04	23.04	0.01	2.152	3.47	3.82	5.4	94.6	0.0	-2.01	0.25	0.73	0.86	3.00	80853	2661	27	2801	0	0	0	logfile
✘	6WQN	21872	2024-09-30	2020-04-29	2.9	2.43	2.85	2.8	0.003	0.49	3.0	0.03	23.04	0.00	1.951	9.03	2.31	2.9	97.1	0.0	-3.39	0.75	0.85	3.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	80700	2646	28	2798	1	0	0	logfile
✔	7TTU	26124	2024-09-30	2022-02-01	3.0	2.90	—	3.1	0.002	0.46	0.0	0.03	22.58	0.00	2.175	4.25	0.00	3.6	96.4	0.0	-1.25	0.62	0.66	1.12	3.0	0.003	0.62	0.0	0.04	23.01	0.00	2.295	4.13	3.73	4.7	95.3	0.0	-1.75	0.85	0.75	0.87	2.53	80724	2661	27	2795	0	0	0	logfile
✔	6PPK	20441	2024-09-30	2019-07-07	4.4	4.58	—	4.5	0.008	1.08	15.0	0.05	26.18	0.01	1.150	22.61	8.03	11.8	87.5	0.7	-4.28	0.88	0.83	—	4.4	0.004	0.73	0.0	0.04	25.33	0.00	2.016	18.77	0.00	8.8	91.2	0.0	-2.22	1.60	0.88	0.84	—	80451	2684	25	2770	1	0	0	logfile
✔	6DDG	7870	2024-09-30	2018-05-10	3.1	3.10	—	3.0	0.007	0.78	0.0	0.04	23.68	0.01	2.040	15.94	0.05	9.4	90.6	0.0	-4.42	0.79	0.83	3.49	3.0	0.006	0.74	0.0	0.04	23.50	0.01	2.139	6.70	3.55	8.1	91.9	0.0	-2.29	0.42	0.81	0.85	2.76	79584	2633	28	2750	1	0	0	logfile
✔	6DDD	7867	2024-09-30	2018-05-10	3.1	3.19	—	3.1	0.008	0.85	0.0	0.05	23.61	0.01	1.998	16.48	0.05	10.6	89.4	0.0	-4.62	0.78	0.84	3.48	3.1	0.004	0.64	1.0	0.04	23.28	0.00	2.122	7.13	3.07	6.1	93.8	0.0	-2.10	2.17	0.79	0.85	2.74	79118	2568	28	2750	1	0	0	logfile
✔	6GC4	4380	2024-09-30	2018-04-17	4.3	4.54	—	4.3	0.003	0.77	0.0	0.03	22.72	0.01	2.252	4.11	0.39	6.9	92.9	0.2	-3.77	0.70	0.60	—	4.3	0.006	0.71	0.0	0.04	23.16	0.01	2.034	17.83	0.09	10.1	89.7	0.1	-2.37	0.99	0.80	0.79	—	80165	2836	26	2705	0	0	0	logfile
✔	6SJ6	10212	2024-09-29	2019-08-12	3.23	3.28	—	3.2	0.010	1.05	0.0	0.06	23.89	0.01	1.886	4.33	0.14	17.7	82.2	0.2	-6.09	0.78	0.78	3.43	3.2	0.005	0.75	0.0	0.04	23.47	0.01	1.856	5.90	3.91	11.8	88.2	0.0	-3.81	2.00	0.79	0.79	2.48	78296	2611	27	2697	59	0	0	logfile
✘	8C8Y	16495	2024-09-29	2023-01-21	3.03	3.24	3.11	3.1	0.002	0.40	0.0	0.03	22.85	0.00	1.796	4.85	0.00	6.2	93.7	0.1	0.29	0.77	0.81	2.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	77316	2566	25	2667	0	0	0	logfile
✘	8J1Z	35939	2024-09-30	2023-04-13	2.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	79520	2835	57	2632	210	664	0	logfile
✔	6PPF	20435	2024-09-28	2019-07-06	3.4	3.48	—	3.4	0.006	0.88	13.0	0.05	25.55	0.00	1.152	14.99	7.36	9.0	90.1	0.9	-4.80	0.73	0.73	1.38	3.4	0.006	0.78	0.0	0.04	25.00	0.01	1.973	8.77	5.58	9.6	90.4	0.0	-2.91	1.24	0.82	0.83	1.66	71835	2101	22	2583	0	13	0	logfile
✔	7S9U	24937	2024-09-27	2021-09-21	3.2	3.94	—	3.1	0.011	0.96	0.0	0.06	24.72	0.01	1.016	12.03	1.90	15.2	84.3	0.4	-5.38	0.66	0.63	2.37	3.1	0.003	0.60	0.0	0.03	24.12	0.00	2.109	6.15	2.24	6.4	93.5	0.1	-2.21	0.95	0.89	0.90	1.73	68620	2090	19	2436	0	0	0	logfile
✔	7SAE	24950	2024-09-27	2021-09-22	3.0	3.49	—	3.0	0.008	0.99	0.0	0.05	24.29	0.01	2.251	2.73	0.29	7.8	92.1	0.1	-4.37	0.81	0.78	3.61	3.0	0.005	0.66	0.0	0.04	23.99	0.01	2.054	4.93	1.84	6.8	93.2	0.0	-1.84	0.92	0.87	0.91	2.92	68571	2090	19	2434	0	0	0	logfile

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