Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oEF	20020	2024-09-24	2019-03-27	3.8	3.98	—	3.8	0.007	1.67	0.0	0.07	11.76	0.01	2.376	3.96	0.00	0.0	0.0	0.0	—	0.47	0.78	—	3.8	0.006	1.19	0.0	0.05	5.93	0.00	2.354	3.26	0.00	0.0	0.0	0.0	—	0.58	0.49	0.80	—	51240	0	14	0	10248	0	0	logfile
✔	6oDJ	20021	2024-09-30	2019-03-26	3.5	3.75	—	3.7	0.009	1.50	0.0	0.07	11.32	0.01	2.438	2.03	0.00	0.0	0.0	0.0	—	0.81	0.81	—	3.7	0.012	1.74	0.0	0.07	8.02	0.00	2.306	2.41	0.00	0.0	0.0	0.0	—	0.61	0.82	0.83	—	25415	0	17	0	5083	0	0	logfile
✔	6JSi	9882	2024-09-27	2019-04-08	4.7	4.70	—	4.6	0.007	1.48	0.0	0.06	15.33	0.01	2.231	10.68	2.42	23.2	72.3	4.5	-6.05	0.64	0.72	—	4.6	0.004	1.03	0.0	0.05	13.24	0.01	2.404	14.15	0.00	24.1	74.2	1.7	-4.86	0.63	0.63	0.70	—	62820	5844	15	0	4044	0	0	logfile
✔	6X64	22069	2024-09-27	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.009	1.20	0.0	0.05	5.38	0.00	2.405	1.28	0.00	0.0	0.0	0.0	—	1.70	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✔	6o1o	0454	2024-09-27	2019-02-21	3.8	4.00	—	3.6	0.008	1.55	0.0	0.07	18.29	0.01	2.295	4.58	0.00	0.0	0.0	0.0	—	0.72	0.70	—	3.6	0.012	1.72	0.0	0.07	16.94	0.00	2.206	9.94	0.00	0.0	0.0	0.0	—	1.31	0.78	0.76	—	15193	0	14	66	2757	0	0	logfile
✔	5ADX	2856	2024-09-23	2015-08-24	4.0	4.18	—	4.0	0.008	1.05	1.0	0.06	12.82	0.00	1.155	3.43	1.97	6.3	93.5	0.3	-2.81	0.77	0.63	—	4.0	0.004	0.71	0.0	0.04	15.09	0.00	2.350	9.17	2.37	4.3	95.7	0.0	-0.57	0.91	0.86	0.79	—	49392	4737	28	0	2569	0	0	logfile
✔	5LC5	4032	2024-09-24	2016-06-19	4.35	4.47	4.28	4.3	0.009	1.47	18.0	1.11	14.69	0.01	1.587	6.08	3.67	8.6	87.7	3.7	-4.81	0.69	0.71	—	4.3	0.010	1.90	0.0	0.33	13.25	0.01	2.305	15.77	0.00	11.1	88.0	0.8	-1.89	1.68	0.71	0.78	—	51718	5916	60	0	1988	0	0	logfile
✔	5LDW	4040	2024-09-24	2016-06-28	4.27	4.38	4.19	4.3	0.009	1.42	20.0	1.11	14.78	0.01	1.608	6.24	3.32	8.5	88.2	3.3	-4.87	0.69	0.73	—	4.3	0.009	1.85	0.0	0.33	12.92	0.00	2.363	11.88	0.00	8.9	90.3	0.8	-1.56	0.94	0.71	0.77	—	51181	5866	60	0	1936	0	0	logfile
✔	7PKQ	13477	2024-09-28	2021-08-26	4.2	4.26	4.62	4.1	0.009	1.42	20.0	0.08	21.64	0.01	2.123	9.00	0.89	6.0	93.8	0.3	-2.71	0.63	0.61	—	4.1	0.004	0.74	0.0	0.04	21.06	0.01	2.103	14.71	0.08	6.8	93.1	0.1	-0.96	0.83	0.65	0.66	—	70313	4968	46	1114	1722	0	0	logfile
✔	6LHV	0900	2024-09-27	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.59	—	4.4	0.010	1.33	0.0	0.04	6.42	0.00	2.267	12.16	0.00	0.0	0.0	0.0	—	3.57	0.84	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	7Q5A	13830	2024-09-27	2021-11-03	2.46	2.69	—	2.6	0.012	1.12	0.0	0.06	9.68	0.00	2.247	3.06	0.00	0.0	100.0	0.0	0.99	0.66	0.84	6.72	2.6	0.052	2.81	43.0	0.20	16.17	0.01	1.689	7.32	6.75	0.0	100.0	0.0	1.18	1.63	0.68	0.87	6.18	61600	5600	2400	0	1600	0	0	logfile
✔	6LHW	0901	2024-09-26	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.28	0.0	0.04	6.20	0.00	2.244	9.56	0.00	0.0	0.0	0.0	—	2.92	0.85	0.76	—	7644	0	3	0	1541	0	0	logfile
✘	6ND4	0441	2024-09-27	2018-12-13	4.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63993	9225	37	551	1306	0	0	logfile
✔	3JAC	6343	2024-09-27	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.72	0.0	0.07	13.28	0.01	2.047	64.31	0.00	24.4	74.1	1.6	-5.24	3.68	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile
✘	5AJ3	2913	2024-09-27	2015-02-20	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	66363	4665	49	1102	1006	118	0	logfile
✘	4CE4	2490	2024-09-27	2013-11-08	4.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65473	3572	48	1437	984	0	0	logfile
✔	5GMK	9525	2024-09-29	2016-07-14	3.4	3.52	—	3.5	0.012	1.25	16.0	0.07	16.17	0.01	1.378	19.35	2.77	7.7	91.2	1.0	-3.71	0.47	0.53	1.66	3.4	0.004	0.73	0.0	0.04	17.76	0.00	1.844	9.18	2.18	6.2	93.4	0.4	-0.12	0.90	0.58	0.80	1.40	75273	8026	53	404	981	0	0	logfile
✔	6J3Z	9776	2024-09-30	2019-01-07	3.6	3.78	—	3.6	0.019	1.82	4.0	0.15	20.86	0.01	1.392	13.61	0.28	4.3	95.7	0.0	-5.08	0.80	0.81	3.43	3.6	0.004	0.72	0.0	0.04	17.47	0.00	1.463	12.35	2.27	3.6	96.4	0.0	0.20	0.75	0.80	0.82	2.67	74619	6984	97	0	978	0	0	logfile
✔	5WSG	6684	2024-09-30	2016-12-07	4.0	4.08	—	4.0	0.015	1.47	46.0	0.08	16.80	0.01	1.580	27.87	1.96	12.5	85.9	1.6	-4.87	0.46	0.55	—	4.0	0.003	0.76	0.0	0.04	17.91	0.00	1.810	10.53	2.99	6.9	92.8	0.3	-0.52	0.89	0.50	0.66	—	76730	8620	53	376	883	0	0	logfile
✔	5o31	3731	2024-09-24	2017-05-23	4.13	4.19	—	4.1	0.008	1.37	11.0	1.11	14.05	0.01	2.512	2.82	2.22	9.3	88.3	2.4	-4.78	0.70	0.73	—	4.1	0.009	1.83	0.0	0.33	12.90	0.00	2.388	11.71	0.03	9.5	90.2	0.3	-1.51	2.17	0.70	0.75	—	52703	7006	56	0	816	0	0	logfile

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