Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6BWi	7299	2024-09-30	2017-12-15	3.7	3.76	—	3.7	0.011	1.39	4.0	0.09	12.18	0.01	1.745	22.56	1.36	8.1	91.5	0.4	-5.08	0.67	0.73	2.06	3.7	0.089	4.98	90.0	0.27	23.37	0.03	1.910	88.76	34.11	35.7	60.8	3.5	-8.21	2.56	0.80	0.86	1.59	23491	2484	8	0	813	0	0	logfile
✔	6G4S	4348	2024-09-23	2018-03-28	4.0	4.37	—	3.9	0.005	1.05	0.0	0.07	23.45	0.01	1.911	1.77	0.00	8.6	91.2	0.2	-3.72	0.72	0.69	—	3.9	0.005	0.78	0.0	0.04	22.99	0.00	2.320	7.43	0.00	11.4	88.5	0.0	-1.00	1.71	0.81	0.73	—	48967	5224	33	1613	768	0	0	logfile
✔	5oF4	3802	2024-09-27	2017-07-10	4.4	4.33	4.38	4.2	0.022	2.15	19.0	0.12	12.45	0.01	1.962	9.84	1.90	11.5	87.8	0.7	-4.34	0.78	0.76	—	4.2	0.004	0.81	0.0	0.04	12.63	0.00	2.351	17.41	0.00	8.9	91.1	0.0	-1.87	0.99	0.76	0.71	—	17200	1718	11	0	746	0	0	logfile
✔	6CB1	7445	2024-09-28	2018-02-01	4.6	4.77	—	4.6	0.006	1.02	0.0	0.06	23.83	0.00	0.266	5.97	0.00	5.0	94.8	0.1	-2.67	0.66	0.49	—	4.5	0.003	0.71	0.0	0.04	23.68	0.00	2.075	14.11	0.00	7.8	92.1	0.0	-0.82	1.99	0.75	0.75	—	69945	6459	45	1615	694	0	0	logfile
✔	6BBM	7076	2024-09-30	2017-10-18	4.1	4.24	—	4.1	0.008	1.20	0.0	0.06	16.70	0.01	2.231	9.86	0.58	13.8	86.1	0.2	-5.97	0.74	0.74	—	4.1	0.004	0.82	0.0	0.05	15.31	0.00	2.448	13.34	0.00	12.9	87.1	0.0	-3.24	0.78	0.75	0.74	—	23956	2662	15	0	623	0	0	logfile
✔	8JoU	36462	2024-09-26	2023-06-08	4.1	6.13	3.95	3.9	0.004	0.83	0.0	0.05	12.09	0.01	0.759	16.82	0.49	7.7	90.4	1.9	-1.54	0.17	0.37	—	3.1	0.003	0.72	0.0	0.04	11.95	0.00	2.407	17.46	0.00	8.3	90.0	1.6	-1.66	2.31	0.23	0.86	—	62425	8135	70	0	590	0	0	logfile
✔	6W1S	21514	2024-09-23	2020-03-04	4.02	4.48	—	4.1	0.008	0.79	0.0	0.04	12.39	0.00	1.820	9.41	0.03	13.4	86.4	0.2	-3.32	0.81	0.74	—	4.1	0.003	0.70	0.0	0.04	12.17	0.00	2.446	8.04	0.00	12.8	87.1	0.0	-1.01	0.57	0.81	0.74	—	47275	6862	26	0	567	0	0	logfile
✔	5oQJ	3846	2024-09-26	2017-08-11	4.7	4.68	—	4.2	0.007	0.54	0.0	0.04	12.58	0.00	1.336	7.82	0.30	6.5	92.3	1.2	-3.41	0.70	0.58	—	4.3	0.005	0.74	0.0	0.04	14.52	0.00	1.986	12.22	0.00	6.2	93.6	0.2	-0.26	1.11	0.84	0.81	—	62931	7649	55	148	557	0	0	logfile
✔	7ZTC	14957	2024-09-30	2022-05-09	3.9	3.69	3.89	3.8	0.004	0.84	0.0	0.05	13.85	0.01	2.123	5.33	0.00	6.9	93.1	0.0	-2.20	0.71	0.82	3.21	3.8	0.004	0.75	0.0	0.04	15.65	0.00	2.416	6.48	1.90	4.9	95.1	0.0	-0.16	2.51	0.72	0.84	2.37	25652	2920	20	0	548	0	0	logfile
✔	6GMH	0031	2024-09-24	2018-05-26	3.1	3.78	3.06	3.2	0.006	0.97	0.0	0.06	13.10	0.01	1.921	5.48	0.53	4.8	95.1	0.1	-2.86	0.83	0.81	2.87	3.3	0.003	0.67	0.0	0.04	15.01	0.00	2.053	7.93	1.42	5.1	94.9	0.0	0.27	1.20	0.84	0.84	2.35	50239	6397	31	106	525	0	0	logfile
✘	8TUG	41623	2024-09-27	2023-08-16	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65461	3748	22	103	512	0	31025	logfile
✔	6BWD	7297	2024-09-29	2017-12-14	3.7	3.83	—	3.8	0.011	1.68	8.0	0.09	13.88	0.01	1.254	13.17	0.57	12.5	86.3	1.2	-5.69	0.64	0.76	1.55	3.8	0.004	0.96	0.0	0.05	15.59	0.00	1.956	15.92	3.85	10.0	89.1	0.9	-1.49	2.49	0.65	0.78	1.36	23187	2600	12	0	509	30	0	logfile
✔	6BWF	7298	2024-09-29	2017-12-14	4.1	4.19	—	4.2	0.008	1.51	2.0	0.07	12.82	0.01	2.204	12.32	0.59	12.1	86.6	1.3	-5.34	0.62	0.71	—	4.2	0.004	0.92	0.0	0.05	13.66	0.00	2.498	15.58	0.00	9.8	89.9	0.3	-1.51	1.92	0.64	0.74	—	22174	2584	4	0	480	0	0	logfile
✔	4UiS	2974	2024-09-25	2015-04-03	4.4	4.48	—	4.4	0.009	1.29	0.0	0.06	9.92	0.01	1.546	24.94	1.19	7.7	87.4	5.0	-1.97	0.50	0.56	—	4.4	0.004	0.84	0.0	0.04	12.18	0.00	2.476	12.80	0.00	9.5	89.1	1.3	-1.94	1.66	0.55	0.74	—	8518	791	10	0	458	0	0	logfile
✘	8TVP	41647	2024-09-27	2023-08-18	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63938	3748	22	103	443	0	29847	logfile
✘	8TVS	41650	2024-09-25	2023-08-18	4.4	4.59	4.48	4.1	0.004	0.77	0.0	0.05	15.19	0.00	1.713	10.23	0.00	4.5	95.5	0.1	-0.62	0.83	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	56913	3697	22	104	443	0	24971	logfile
✘	8TVQ	41648	2024-09-26	2023-08-18	4.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57734	3424	20	100	443	0	26880	logfile
✔	8GZ3	34389	2024-09-25	2022-09-24	3.3	3.13	—	3.1	0.012	1.45	3.0	0.10	15.00	0.01	2.142	5.81	1.74	1.8	98.2	0.0	-0.20	0.63	0.77	2.77	3.1	0.003	0.59	0.0	0.03	14.03	0.00	2.455	4.44	1.74	1.2	98.8	0.0	0.78	1.18	0.71	0.83	3.21	8542	789	7	0	434	1	0	logfile
✔	6J3Y	9775	2024-09-29	2019-01-07	3.3	3.49	—	3.4	0.019	1.77	4.0	0.14	19.66	0.01	1.372	10.02	0.32	4.1	95.9	0.0	-5.09	0.77	0.84	3.85	3.4	0.003	0.67	0.0	0.04	16.85	0.00	2.219	10.71	1.40	3.5	96.5	0.0	0.50	0.65	0.78	0.87	2.78	70136	6984	90	0	428	0	0	logfile
✔	6WTH	21896	2024-09-26	2020-05-02	3.06	3.56	3.08	3.4	0.002	0.56	0.0	0.05	7.45	0.00	2.217	4.94	0.84	2.2	97.8	0.0	-3.50	0.72	0.75	3.88	3.4	0.004	0.58	0.0	0.04	12.51	0.00	2.325	5.64	1.96	4.0	96.0	0.0	-0.39	0.59	0.77	0.87	3.47	11740	1183	12	0	422	0	0	logfile

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