Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BER	44482	2024-09-28	2024-04-16	4.1	4.97	4.17	4.1	0.005	0.83	1.0	0.06	16.15	0.01	1.899	5.81	0.24	7.4	92.5	0.1	-2.06	0.83	0.81	—	4.2	0.012	0.73	0.0	0.05	12.72	0.01	2.398	13.27	0.00	8.1	91.9	0.0	-1.66	0.81	0.84	0.85	—	20350	2416	36	0	100	0	0	logfile
✘	8JXo	36707	2024-09-23	2023-07-01	2.7	3.04	2.81	3.0	0.009	1.33	6.0	0.09	22.33	0.02	1.645	18.53	24.41	6.9	91.2	1.9	-2.50	0.65	0.84	3.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6294	786	9	0	21	9	0	logfile
✔	8RK4	19259	2024-09-24	2023-12-23	4.74	6.78	6.17	3.7	0.003	0.72	0.0	0.05	11.12	0.00	0.920	21.20	0.00	4.0	95.7	0.3	-1.38	0.94	0.75	—	3.8	0.002	0.65	0.0	0.04	11.91	0.00	2.570	9.10	0.00	4.0	95.7	0.3	-0.96	0.95	0.94	0.72	—	8373	1119	3	0	0	0	0	logfile
✘	8XQ9	38570	2024-09-25	2024-01-04	3.77	2.79	3.79	2.7	0.003	0.71	0.0	0.04	14.17	0.01	2.293	4.12	4.48	2.1	97.9	0.0	-1.10	0.68	0.71	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10672	1366	2	0	0	0	0	logfile
✔	8URE	42491	2024-09-24	2023-10-25	4.4	3.48	4.69	5.0	0.009	1.42	0.0	0.06	6.50	0.01	2.628	0.00	0.00	1.3	98.7	0.0	-0.01	0.78	0.79	—	4.8	0.004	0.53	0.0	0.03	4.26	0.00	2.616	0.83	0.00	3.0	97.0	0.0	0.95	0.65	0.81	0.82	—	8896	1792	8	0	0	0	0	logfile
✘	8V5R	42984	2024-09-27	2023-11-30	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15338	1743	6	43	1	0	0	logfile
✘	8RCF	19051	2024-09-28	2023-12-06	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20202	2488	18	46	24	0	0	logfile
✘	8ZAP	39883	2024-09-24	2024-04-25	2.6	2.77	2.58	2.8	0.003	0.60	0.0	0.04	16.03	0.01	1.487	8.32	4.19	2.6	97.4	0.0	1.24	0.71	0.89	4.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6442	776	9	0	27	36	0	logfile
✔	9BRR	44841	2024-09-27	2024-05-11	4.5	3.78	4.55	4.0	0.005	0.84	3.0	0.05	12.84	0.01	2.279	3.84	0.42	5.0	94.7	0.4	0.03	0.48	0.67	—	3.9	0.004	0.74	0.0	0.04	13.72	0.00	2.220	12.39	0.04	5.4	94.5	0.1	0.27	1.32	0.49	0.68	—	65594	8393	32	0	0	0	0	logfile
✔	8XM7	38466	2024-09-28	2023-12-27	4.91	3.77	4.50	7.7	0.007	1.01	0.0	0.05	14.71	0.01	2.009	51.04	0.00	11.1	88.9	0.0	-2.89	0.86	0.80	—	7.7	0.004	0.77	0.0	0.05	14.79	0.01	1.989	22.88	0.00	7.1	92.9	0.0	-1.31	0.57	0.86	0.79	—	17190	2123	4	0	2	0	0	logfile
✘	8Y8B	39040	2024-09-24	2024-02-06	3.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7303	902	14	0	26	0	0	logfile
✘	8P7D	17530	2024-09-25	2023-05-30	4.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9686	1008	6	83	3	1	0	logfile
✔	8SL6	40574	2024-09-30	2023-04-21	4.3	4.65	4.38	4.4	0.005	0.71	0.0	0.04	11.90	0.00	2.128	11.89	0.00	4.5	95.5	0.0	-1.39	0.70	0.79	—	4.4	0.002	0.56	0.0	0.04	11.65	0.00	2.517	5.72	0.00	3.7	96.3	0.0	2.20	1.79	0.69	0.78	—	23954	3634	4	0	0	0	0	logfile
✔	8PQ5	17820	2024-09-24	2023-07-10	4.4	4.07	4.39	7.3	0.003	0.69	0.0	0.05	14.88	0.00	2.133	25.49	0.00	9.2	90.8	0.0	-1.84	0.79	0.69	—	7.2	0.003	0.76	0.0	0.05	14.86	0.01	2.389	22.57	0.00	9.6	90.4	0.0	-2.20	1.08	0.80	0.70	—	6300	782	5	0	2	0	0	logfile
✔	9BRQ	44840	2024-09-27	2024-05-11	4.3	4.97	4.53	4.4	0.004	0.83	0.0	0.05	13.74	0.01	2.339	3.94	0.15	5.5	94.4	0.1	-0.58	0.72	0.77	—	4.4	0.003	0.71	0.0	0.04	13.94	0.00	2.311	14.49	0.00	5.0	94.9	0.1	0.30	0.58	0.73	0.83	—	67167	8590	33	0	0	0	0	logfile
✘	9CEZ	45524	2024-09-26	2024-06-27	3.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13540	600	6	115	3	3	6178	logfile
✘	8WJ1	37575	2024-09-26	2023-09-25	2.27	2.40	2.29	2.5	0.015	1.77	12.0	0.10	18.98	0.03	0.000	10.88	14.10	1.1	98.6	0.4	-1.89	0.56	0.71	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14196	1698	36	0	24	738	0	logfile
✔	8oEF	16825	2024-09-26	2023-03-10	4.0	3.42	4.07	4.5	0.002	0.47	0.0	0.04	15.21	0.00	2.235	5.57	0.00	1.7	98.3	0.0	0.95	0.63	0.45	—	4.5	0.002	0.55	0.0	0.04	16.09	0.00	2.346	8.15	1.33	2.4	97.6	0.0	1.01	0.58	0.65	0.50	—	9687	612	1	0	0	0	4859	logfile
✘	8RCD	19050	2024-09-28	2023-12-06	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19680	2480	17	23	24	0	0	logfile
✘	8WiZ	37573	2024-09-27	2023-09-25	2.2	2.38	2.23	2.4	0.015	1.78	6.0	0.10	20.31	0.03	0.000	13.55	10.83	2.8	97.2	0.0	-1.91	0.59	0.73	3.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15306	1722	36	0	18	1068	0	logfile

• ← previous
• Page 2 of 538
• next →