Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6HV9	0288	2024-09-23	2018-10-10	4.98	4.88	—	4.5	0.012	1.86	14.0	0.09	12.30	0.01	1.447	9.25	0.49	10.9	88.8	0.3	-4.02	0.78	0.66	—	4.5	0.003	0.76	0.0	0.04	13.35	0.00	2.341	11.27	0.00	7.7	92.2	0.1	-1.27	1.65	0.79	0.67	—	47617	6040	18	49	4	0	0	logfile
✔	8UDG	42149	2024-09-28	2023-09-28	4.98	6.27	5.10	5.0	0.004	0.65	0.0	0.04	11.43	0.00	2.089	3.07	0.00	2.8	97.1	0.2	-0.18	0.86	0.74	—	5.0	0.003	0.55	0.0	0.04	12.02	0.00	2.224	7.94	0.00	4.6	95.3	0.2	0.19	1.04	0.87	0.76	—	19524	1317	7	0	0	0	9627	logfile
✔	7V02	26927	2024-09-28	2022-05-09	4.97	8.16	5.87	4.6	0.006	0.93	0.0	0.06	14.12	0.00	2.048	13.24	0.65	4.8	95.1	0.0	-1.12	0.83	0.64	—	4.7	0.003	0.65	0.0	0.04	14.34	0.00	2.373	15.95	0.00	3.5	96.5	0.0	-0.27	1.08	0.91	0.81	—	17417	2070	9	29	0	0	0	logfile
✔	8XM7	38466	2024-09-28	2023-12-27	4.91	3.77	4.50	7.7	0.007	1.01	0.0	0.05	14.71	0.01	2.009	51.04	0.00	11.1	88.9	0.0	-2.89	0.86	0.80	—	7.7	0.004	0.77	0.0	0.05	14.79	0.01	1.989	22.88	0.00	7.1	92.9	0.0	-1.31	0.57	0.86	0.79	—	17190	2123	4	0	2	0	0	logfile
✔	7PD4	13330	2024-09-24	2021-08-04	4.9	4.13	—	7.8	0.005	0.87	0.0	0.05	14.59	0.00	2.035	38.59	0.00	11.7	88.3	0.0	-4.80	0.73	0.72	—	7.9	0.003	0.82	0.0	0.04	13.41	0.00	2.381	13.24	0.00	4.1	95.9	0.0	-0.25	0.98	0.73	0.72	—	6676	842	1	0	0	0	0	logfile
✔	7KPW	22990	2024-09-23	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.9	0.002	0.67	0.0	0.04	4.82	0.00	2.474	0.66	0.00	9.6	89.8	0.6	0.64	2.03	0.82	0.81	—	4313	865	1	0	0	0	0	logfile
✔	8DS6	27684	2024-09-25	2022-07-21	4.9	4.18	4.54	3.7	0.012	1.43	0.0	0.06	10.65	0.01	2.494	0.39	0.00	1.4	98.6	0.0	1.06	0.85	0.67	—	3.7	0.002	0.56	0.0	0.04	11.64	0.01	2.466	5.43	0.00	2.1	97.9	0.0	1.90	1.10	0.85	0.62	—	10135	669	2	0	0	0	5107	logfile
✔	8EXQ	28659	2024-09-25	2022-10-25	4.9	5.40	5.55	6.0	0.020	1.74	0.0	0.10	10.28	0.01	2.002	1.81	0.00	2.5	97.3	0.2	0.34	0.52	0.45	—	6.0	0.003	0.68	0.0	0.04	12.72	0.00	2.446	13.67	0.00	4.7	95.3	0.0	-0.46	2.50	0.57	0.62	—	9304	1108	4	0	2	0	0	logfile
✘	5ZCS	6913	2024-09-24	2018-02-20	4.9	5.50	—	6.9	0.003	0.77	0.0	0.05	9.66	0.01	2.281	3.31	0.05	5.6	94.3	0.1	-5.28	0.85	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49176	6644	10	0	278	0	0	logfile
✔	8A5Y	15199	2024-09-26	2022-06-16	4.9	5.07	4.78	4.9	0.004	0.88	4.0	0.05	13.25	0.00	1.998	18.51	0.05	3.9	95.8	0.4	0.86	0.85	0.76	—	4.9	0.003	0.71	0.0	0.04	13.70	0.00	1.949	13.92	0.00	4.4	95.4	0.2	0.35	0.70	0.86	0.78	—	57866	7213	18	0	3	0	0	logfile
✔	5VoT	8721	2024-09-27	2017-05-03	4.9	4.98	—	4.9	0.004	0.67	0.0	0.04	7.57	0.00	2.126	11.91	0.00	8.5	91.5	0.0	-4.03	0.63	0.71	—	4.9	0.003	0.70	0.0	0.04	11.03	0.00	2.343	9.85	0.00	5.3	94.7	0.0	0.28	0.84	0.65	0.80	—	16463	2322	8	0	0	0	0	logfile
✔	7P2Q	13172	2024-09-23	2021-07-06	4.9	4.54	—	4.3	0.004	0.84	0.0	0.05	11.11	0.01	2.264	4.17	0.00	5.0	95.0	0.0	-3.09	0.77	0.72	—	4.2	0.003	0.81	0.0	0.04	12.45	0.00	2.297	11.06	0.00	5.2	94.8	0.0	-0.46	1.57	0.80	0.75	—	4780	587	5	0	5	0	0	logfile
✔	6VAB	21135	2024-09-23	2019-12-17	4.9	6.51	—	6.8	0.005	0.91	0.0	0.06	8.70	0.01	2.264	14.98	0.00	6.8	93.2	0.0	-3.84	0.71	0.69	—	6.6	0.002	0.63	0.0	0.04	4.29	0.00	2.555	1.33	0.00	4.4	95.6	0.0	0.08	1.87	0.72	0.67	—	4642	938	4	0	0	0	0	logfile
✔	7BWA	30231	2024-09-26	2020-04-14	4.9	5.10	4.70	4.8	0.004	0.77	0.0	0.05	15.31	0.00	1.970	41.05	0.00	13.4	86.6	0.0	-4.15	0.80	0.64	—	4.8	0.004	0.79	0.0	0.05	14.15	0.00	2.026	17.59	0.00	9.4	90.6	0.0	-3.09	1.67	0.79	0.60	—	11670	1444	4	0	0	0	0	logfile
✔	7P2P	13171	2024-09-23	2021-07-06	4.9	4.40	5.09	4.3	0.005	1.10	0.0	0.07	13.15	0.01	2.325	4.27	0.19	8.1	91.9	0.0	-3.94	0.76	0.66	—	4.2	0.003	0.85	0.0	0.05	12.82	0.01	2.444	12.50	0.00	7.4	92.6	0.0	-1.98	1.13	0.78	0.73	—	4783	587	5	0	5	0	0	logfile
✔	3J6F	5896	2024-09-26	2014-02-19	4.9	4.97	—	4.9	0.021	2.64	64.0	0.14	14.01	0.01	2.017	5.57	0.14	3.1	96.3	0.6	-1.05	0.62	0.66	—	4.9	0.003	0.76	0.0	0.05	14.91	0.01	1.878	16.77	0.12	3.0	97.0	0.0	0.57	2.79	0.68	0.81	—	60903	7686	45	9	18	36	0	logfile
✔	6R23	4708	2024-09-23	2019-03-15	4.9	4.57	—	4.6	0.006	1.07	0.0	0.05	16.56	0.01	2.332	7.52	0.00	7.9	92.1	0.0	-4.61	0.60	0.75	—	4.6	0.003	0.70	0.0	0.03	16.71	0.00	2.619	6.54	0.00	6.7	93.3	0.0	0.80	3.40	0.60	0.73	—	1518	182	2	0	0	0	0	logfile
✘	6UXB	20932	2024-09-25	2019-11-07	4.9	5.50	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.627	0.00	0.00	3.8	96.2	0.0	-2.56	0.74	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10344	2104	8	0	0	0	0	logfile
✔	8SLi	40578	2024-09-29	2023-04-21	4.9	5.15	4.96	4.9	0.004	0.57	0.0	0.04	9.81	0.00	2.188	11.13	0.00	6.5	93.5	0.0	-2.65	0.70	0.80	—	4.9	0.003	0.58	0.0	0.04	9.99	0.00	2.421	5.62	0.00	7.6	92.4	0.0	0.55	1.67	0.71	0.81	—	20996	3576	8	0	8	0	0	logfile
✔	5LJo	4061	2024-09-30	2016-07-19	4.9	7.28	—	5.9	0.014	1.69	1.0	0.08	11.01	0.01	2.147	5.45	0.15	9.4	86.8	3.8	-2.52	0.69	0.58	—	5.9	0.003	0.70	0.0	0.04	12.74	0.01	2.280	11.55	0.00	12.8	86.8	0.4	-2.75	1.31	0.80	0.80	—	24947	1624	5	0	0	0	12255	logfile

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