Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KPW	22990	2024-09-23	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.9	0.002	0.67	0.0	0.04	4.82	0.00	2.474	0.66	0.00	9.6	89.8	0.6	0.64	2.03	0.82	0.81	—	4313	865	1	0	0	0	0	logfile
✔	5J8V	8073	2024-09-29	2016-04-08	4.9	4.81	—	4.7	0.024	2.67	214.0	0.16	10.17	0.01	1.145	73.68	28.71	6.2	86.5	7.3	2.50	0.71	0.67	—	4.7	0.004	0.98	0.0	0.04	9.14	0.00	2.297	6.53	0.32	12.7	85.8	1.5	-1.03	0.82	0.75	0.75	—	73616	13812	4	0	0	0	0	logfile
✔	7P2Q	13172	2024-09-23	2021-07-06	4.9	4.54	—	4.3	0.004	0.84	0.0	0.05	11.11	0.01	2.264	4.17	0.00	5.0	95.0	0.0	-3.09	0.77	0.72	—	4.2	0.003	0.81	0.0	0.04	12.45	0.00	2.297	11.06	0.00	5.2	94.8	0.0	-0.46	1.57	0.80	0.75	—	4780	587	5	0	5	0	0	logfile
✔	6VAB	21135	2024-09-23	2019-12-17	4.9	6.51	—	6.8	0.005	0.91	0.0	0.06	8.70	0.01	2.264	14.98	0.00	6.8	93.2	0.0	-3.84	0.71	0.69	—	6.6	0.002	0.63	0.0	0.04	4.29	0.00	2.555	1.33	0.00	4.4	95.6	0.0	0.08	1.87	0.72	0.67	—	4642	938	4	0	0	0	0	logfile
✘	4CE4	2490	2024-09-27	2013-11-08	4.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65473	3572	48	1437	984	0	0	logfile
✔	8EYY	28724	2024-09-28	2022-10-29	4.9	6.21	5.32	4.3	0.003	0.58	0.0	0.04	12.98	0.00	2.165	21.05	0.06	7.2	92.6	0.2	-1.16	0.89	0.81	—	4.3	0.003	0.61	0.0	0.04	13.28	0.00	2.388	16.39	0.00	6.8	93.1	0.1	-1.26	1.14	0.90	0.84	—	14301	1773	6	0	0	0	0	logfile
✔	7BWA	30231	2024-09-26	2020-04-14	4.9	5.10	4.70	4.8	0.004	0.77	0.0	0.05	15.31	0.00	1.970	41.05	0.00	13.4	86.6	0.0	-4.15	0.80	0.64	—	4.8	0.004	0.79	0.0	0.05	14.15	0.00	2.026	17.59	0.00	9.4	90.6	0.0	-3.09	1.67	0.79	0.60	—	11670	1444	4	0	0	0	0	logfile
✘	6UXB	20932	2024-09-25	2019-11-07	4.9	5.50	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.627	0.00	0.00	3.8	96.2	0.0	-2.56	0.74	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10344	2104	8	0	0	0	0	logfile
✘	5ZCS	6913	2024-09-24	2018-02-20	4.9	5.50	—	6.9	0.003	0.77	0.0	0.05	9.66	0.01	2.281	3.31	0.05	5.6	94.3	0.1	-5.28	0.85	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49176	6644	10	0	278	0	0	logfile
✘	5LMV	4083	2024-09-26	2016-08-01	4.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	59470	3124	31	1612	4	0	0	logfile
✘	8EP0	28494	2024-09-30	2022-10-04	4.9	6.49	5.04	5.3	0.004	0.79	0.0	0.05	12.19	0.01	2.237	11.79	0.00	3.6	96.4	0.0	0.06	0.70	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24408	3372	8	0	0	0	0	logfile
✔	7RSi	24672	2024-09-25	2021-08-11	4.9	7.04	5.29	7.8	0.015	1.51	0.0	0.07	12.44	0.01	2.015	5.90	0.00	4.5	94.6	0.9	-0.32	0.82	0.69	—	7.5	0.004	0.64	0.0	0.04	12.84	0.00	1.858	11.61	0.00	6.3	93.7	0.0	-0.10	1.20	0.83	0.69	—	10886	686	3	0	2	0	5400	logfile
✔	8SLi	40578	2024-09-29	2023-04-21	4.9	5.15	4.96	4.9	0.004	0.57	0.0	0.04	9.81	0.00	2.188	11.13	0.00	6.5	93.5	0.0	-2.65	0.70	0.80	—	4.9	0.003	0.58	0.0	0.04	9.99	0.00	2.421	5.62	0.00	7.6	92.4	0.0	0.55	1.67	0.71	0.81	—	20996	3576	8	0	8	0	0	logfile
✔	5VoT	8721	2024-09-27	2017-05-03	4.9	4.98	—	4.9	0.004	0.67	0.0	0.04	7.57	0.00	2.126	11.91	0.00	8.5	91.5	0.0	-4.03	0.63	0.71	—	4.9	0.003	0.70	0.0	0.04	11.03	0.00	2.343	9.85	0.00	5.3	94.7	0.0	0.28	0.84	0.65	0.80	—	16463	2322	8	0	0	0	0	logfile
✔	7Z8L	14556	2024-09-27	2022-03-17	4.9	4.50	4.38	4.0	0.012	1.30	0.0	0.09	9.68	0.01	2.296	0.29	0.00	1.2	98.8	0.0	1.37	0.76	0.77	—	4.0	0.004	0.63	0.0	0.04	6.87	0.00	1.809	2.27	0.00	5.1	94.9	0.0	1.52	0.68	0.81	0.84	—	16513	3311	3	0	5	0	0	logfile
✔	5LJo	4061	2024-09-30	2016-07-19	4.9	7.28	—	5.9	0.014	1.69	1.0	0.08	11.01	0.01	2.147	5.45	0.15	9.4	86.8	3.8	-2.52	0.69	0.58	—	5.9	0.003	0.70	0.0	0.04	12.74	0.01	2.280	11.55	0.00	12.8	86.8	0.4	-2.75	1.31	0.80	0.80	—	24947	1624	5	0	0	0	12255	logfile
✔	6UPK	20840	2024-09-26	2019-10-17	4.9	7.69	6.08	7.1	0.005	0.94	0.0	0.05	20.42	0.01	1.570	20.39	0.00	7.2	92.8	0.0	-3.94	0.89	0.77	—	7.0	0.003	0.66	0.0	0.04	21.88	0.00	1.972	17.17	0.00	4.9	95.1	0.0	-1.32	2.94	0.89	0.78	—	13861	1314	13	144	54	0	0	logfile
✔	8EXQ	28659	2024-09-25	2022-10-25	4.9	5.40	5.55	6.0	0.020	1.74	0.0	0.10	10.28	0.01	2.002	1.81	0.00	2.5	97.3	0.2	0.34	0.52	0.45	—	6.0	0.003	0.68	0.0	0.04	12.72	0.00	2.446	13.67	0.00	4.7	95.3	0.0	-0.46	2.50	0.57	0.62	—	9304	1108	4	0	2	0	0	logfile
✔	3J6F	5896	2024-09-26	2014-02-19	4.9	4.97	—	4.9	0.021	2.64	64.0	0.14	14.01	0.01	2.017	5.57	0.14	3.1	96.3	0.6	-1.05	0.62	0.66	—	4.9	0.003	0.76	0.0	0.05	14.91	0.01	1.878	16.77	0.12	3.0	97.0	0.0	0.57	2.79	0.68	0.81	—	60903	7686	45	9	18	36	0	logfile
✔	7AFK	11768	2024-09-28	2020-09-19	4.9	5.45	4.72	3.0	0.007	0.89	1.0	0.05	23.87	0.00	1.519	42.37	0.00	8.4	91.6	0.0	-2.88	0.87	0.80	—	2.7	0.005	0.71	0.0	0.04	23.02	0.01	1.855	28.47	0.00	6.0	94.0	0.0	-1.03	0.78	0.88	0.85	—	18521	1108	11	456	13	0	0	logfile

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