Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WUi	37855	2024-09-27	2023-10-20	3.4	3.66	3.48	3.7	0.006	0.84	0.0	0.05	19.52	0.01	1.049	21.56	5.09	6.2	93.0	0.7	-1.15	0.56	0.68	1.43	3.7	0.003	0.70	0.0	0.04	18.47	0.00	2.524	11.89	3.19	5.0	94.5	0.4	-0.06	0.71	0.57	0.76	1.45	15340	1826	8	0	14	0	0	logfile
✔	8WiF	37565	2024-09-24	2023-09-24	2.9	3.32	2.88	2.9	0.006	0.63	0.0	0.04	23.74	0.00	2.057	8.94	4.98	4.5	95.4	0.0	0.79	0.84	0.90	2.13	2.9	0.005	0.62	0.0	0.04	23.42	0.00	2.020	7.13	4.98	4.1	95.9	0.0	0.87	1.53	0.84	0.90	2.28	52783	2557	23	1517	0	0	0	logfile
✔	8ZBE	39901	2024-09-24	2024-04-26	3.24	3.44	3.22	3.4	0.005	0.90	0.0	0.05	15.39	0.00	2.276	11.65	0.00	6.2	93.8	0.0	-2.05	0.60	0.66	0.71	3.4	0.003	0.63	0.0	0.04	16.15	0.00	2.550	8.10	5.82	5.2	94.8	0.0	-0.93	0.44	0.61	0.67	1.04	7489	1113	7	0	1	0	0	logfile
✔	8SZ4	40901	2024-09-23	2023-05-26	2.86	3.08	2.87	3.2	0.003	0.57	0.0	0.04	9.74	0.00	2.230	2.07	0.00	2.0	98.0	0.0	-0.45	0.18	0.26	2.84	3.1	0.003	0.64	0.0	0.04	13.62	0.00	2.493	3.68	1.26	2.8	97.2	0.0	1.66	2.06	0.43	0.67	0.96	4346	259	1	0	0	0	2184	logfile
✔	8QEo	18374	2024-09-28	2023-09-01	3.26	2.53	3.32	3.1	0.004	0.53	0.0	0.04	11.10	0.00	2.018	6.28	2.65	8.6	91.3	0.1	-1.38	0.75	0.71	2.54	3.1	0.004	0.69	0.0	0.05	14.91	0.00	2.110	10.71	2.75	7.8	92.1	0.1	-1.03	0.74	0.78	0.76	1.94	18126	2267	3	0	1	0	0	logfile
✔	8T4K	41034	2024-09-26	2023-06-09	2.6	2.78	2.58	2.8	0.007	1.10	0.0	0.07	13.19	0.01	1.281	1.04	0.62	0.9	98.9	0.2	0.97	0.68	0.84	5.26	2.8	0.004	0.62	0.0	0.05	15.16	0.00	2.543	4.94	2.27	1.4	98.6	0.0	1.16	0.38	0.71	0.86	4.74	13560	1638	12	0	39	0	0	logfile
✔	8oWJ	17238	2024-09-23	2023-04-28	3.75	3.75	3.51	4.1	0.012	2.26	0.0	0.11	15.84	0.02	2.610	8.57	3.57	0.0	100.0	0.0	-1.73	0.45	0.61	2.82	4.2	0.004	0.91	0.0	0.05	16.37	0.00	2.574	17.69	0.36	9.7	90.3	0.0	-3.30	1.91	0.49	0.72	3.13	2720	360	10	0	0	0	0	logfile
✔	8PPR	17814	2024-09-25	2023-07-08	3.0	3.16	3.06	3.3	0.003	0.63	0.0	0.04	14.03	0.00	2.133	12.50	0.00	2.1	97.8	0.1	3.16	0.77	0.74	1.10	3.3	0.006	0.68	0.0	0.04	16.43	0.00	2.401	9.33	1.73	2.9	97.0	0.1	2.69	0.56	0.76	0.76	1.40	11354	1388	9	0	0	1	0	logfile
✔	8QCY	18337	2024-09-23	2023-08-28	2.9	3.36	3.07	3.3	0.004	0.58	0.0	0.04	11.88	0.00	2.245	5.86	0.00	1.4	98.6	0.0	0.40	0.55	0.78	3.99	3.3	0.003	0.64	0.0	0.04	15.55	0.00	2.550	6.91	2.27	1.9	98.1	0.0	2.18	1.25	0.48	0.73	2.90	3273	421	1	0	0	0	0	logfile
✔	8RGG	19132	2024-09-24	2023-12-13	4.0	4.37	3.92	4.0	0.012	1.85	5.0	0.10	13.18	0.01	2.531	0.14	0.00	4.1	95.9	0.0	-0.27	0.70	0.46	—	4.0	0.003	0.74	0.0	0.04	15.09	0.00	2.433	10.03	3.25	5.9	94.1	0.0	0.65	2.90	0.75	0.59	—	7679	1156	7	0	0	0	0	logfile
✔	8iZA	35837	2024-09-25	2023-04-06	3.48	3.88	3.60	3.8	0.003	0.61	0.0	0.04	12.64	0.00	2.116	5.45	0.00	2.4	97.6	0.0	-1.60	0.60	0.75	0.82	3.8	0.003	0.56	0.0	0.04	15.60	0.00	1.973	5.01	1.75	3.5	96.5	0.0	1.03	0.86	0.65	0.86	1.10	9985	1246	2	0	4	0	0	logfile
✔	8ZHG	60102	2024-09-23	2024-05-10	3.51	3.69	3.44	3.7	0.003	0.66	0.0	0.04	17.55	0.01	2.273	4.79	1.11	4.3	95.7	0.0	-1.47	0.61	0.72	1.21	3.6	0.002	0.60	0.0	0.04	17.36	0.00	2.563	6.18	4.99	4.3	95.7	0.0	-0.90	1.97	0.64	0.77	1.26	3326	425	4	0	2	0	0	logfile
✔	8X5i	38070	2024-09-27	2023-11-17	3.01	3.31	3.19	3.2	0.007	1.05	0.0	0.06	15.26	0.01	2.113	3.05	0.64	4.8	95.2	0.0	-3.57	0.69	0.85	3.46	3.2	0.004	0.81	1.0	0.05	16.15	0.00	2.033	4.90	1.75	4.3	95.7	0.0	0.26	0.53	0.75	0.88	3.16	17006	2063	8	0	8	0	0	logfile
✔	8W9C	37364	2024-09-27	2023-09-05	3.3	3.57	3.36	3.6	0.005	0.79	3.0	0.06	18.16	0.01	1.965	14.24	7.42	6.1	93.6	0.2	-3.11	0.65	0.69	1.91	3.6	0.003	0.68	0.0	0.04	18.26	0.00	1.983	9.82	2.75	5.6	94.4	0.0	0.26	0.70	0.64	0.71	1.78	15278	1868	9	0	9	0	0	logfile
✔	8iWJ	35768	2024-09-24	2023-03-30	3.0	3.23	3.01	3.2	0.010	1.06	0.0	0.06	9.69	0.01	2.363	1.86	0.00	7.8	92.0	0.2	-6.16	0.71	0.86	4.27	3.2	0.003	0.65	0.0	0.04	13.39	0.00	2.207	3.83	1.84	5.2	94.8	0.0	-1.07	1.62	0.62	0.83	2.85	8484	1092	2	0	0	0	0	logfile
✔	8SoB	40652	2024-09-30	2023-04-28	3.9	4.32	3.96	4.0	0.006	0.63	0.0	0.04	11.26	0.01	1.927	5.49	2.74	7.2	92.7	0.1	0.07	0.86	0.78	1.65	4.0	0.003	0.53	0.0	0.04	13.44	0.00	2.020	4.06	0.96	4.5	95.5	0.0	0.70	1.34	0.87	0.79	1.61	24416	1507	3	0	1	0	12255	logfile
✔	8J5R	35991	2024-09-26	2023-04-24	3.28	3.61	3.32	3.5	0.007	0.96	8.0	0.07	15.64	0.01	2.145	14.34	0.22	6.2	93.8	0.0	-1.53	0.74	0.87	2.61	3.5	0.002	0.57	0.0	0.04	16.37	0.00	2.576	5.16	1.69	3.6	96.4	0.0	0.32	0.91	0.73	0.89	2.22	13050	1726	5	0	1	0	0	logfile
✔	8RoX	19406	2024-09-24	2024-01-12	3.3	4.29	3.46	4.0	0.008	1.02	0.0	0.07	12.77	0.01	2.316	2.97	1.59	5.1	94.9	0.0	-1.84	0.80	0.76	2.56	4.0	0.002	0.57	0.0	0.04	13.01	0.00	2.603	2.82	3.78	2.8	97.2	0.0	-0.32	0.88	0.82	0.80	2.21	7249	1134	4	0	1	0	0	logfile
✔	8PJP	17718	2024-09-23	2023-06-23	2.92	3.55	2.87	3.4	0.003	0.53	0.0	0.04	15.92	0.00	2.365	2.11	1.34	2.5	97.5	0.0	0.81	0.38	0.90	2.83	3.4	0.003	0.68	0.0	0.04	16.82	0.00	2.466	4.22	3.12	2.5	97.5	0.0	0.76	1.35	0.34	0.91	3.70	2157	286	3	0	2	0	0	logfile
✔	8QAU	18304	2024-09-25	2023-08-23	3.54	4.46	3.61	4.1	0.004	0.69	0.0	0.04	17.84	0.00	1.980	12.57	0.00	3.5	96.5	0.1	0.50	0.56	0.64	1.74	4.1	0.003	0.76	0.0	0.05	17.07	0.00	1.919	10.65	1.95	3.2	96.8	0.1	1.29	0.77	0.61	0.76	1.44	10137	1347	8	1	3	0	0	logfile

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