Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NBX	12262	2024-09-29	2021-01-28	4.8	5.30	4.72	4.9	0.008	1.04	0.0	0.05	15.90	0.01	1.950	12.59	0.00	12.3	87.6	0.1	-4.49	0.76	0.82	—	4.9	0.006	0.75	0.0	0.04	14.32	0.00	2.310	13.17	0.00	13.1	86.9	0.1	-2.79	0.70	0.76	0.82	—	22637	1475	5	0	0	0	11129	logfile
✔	6PPR	20446	2024-09-26	2019-07-08	3.5	3.62	—	3.6	0.009	1.16	0.0	0.06	15.43	0.01	2.032	11.04	1.28	10.1	89.8	0.1	-6.00	0.77	0.84	3.29	3.6	0.003	0.69	0.0	0.04	17.01	0.00	2.046	4.30	2.76	5.7	94.3	0.0	-1.52	1.09	0.77	0.83	2.41	11995	1594	4	32	2	0	0	logfile
✔	6DUZ	8913	2024-09-29	2018-06-22	3.6	3.88	—	3.8	0.006	0.97	0.0	0.05	11.01	0.01	1.677	4.59	4.35	3.2	96.8	0.0	-4.32	0.76	0.82	2.31	3.8	0.003	0.69	1.0	0.04	16.38	0.00	2.105	6.28	3.58	2.4	97.5	0.0	-0.11	1.85	0.67	0.86	1.64	72744	9072	48	0	0	0	0	logfile
✔	7ZH0	14716	2024-09-23	2022-04-05	3.2	3.63	3.07	3.5	0.004	0.72	0.0	0.04	13.97	0.01	2.191	14.27	0.24	6.0	94.0	0.0	1.08	0.65	0.75	3.58	3.5	0.004	0.68	0.0	0.04	16.40	0.00	2.556	12.49	4.65	5.7	94.3	0.0	0.98	0.49	0.67	0.77	2.80	3869	495	1	0	0	0	0	logfile
✔	7R8C	24315	2024-09-24	2021-06-26	3.7	4.19	—	4.1	0.002	0.49	0.0	0.04	12.82	0.00	2.073	6.73	0.21	4.8	95.2	0.0	-1.63	0.68	0.85	1.76	4.1	0.003	0.67	0.0	0.04	15.21	0.00	2.610	7.42	2.36	5.5	94.5	0.0	1.18	0.55	0.71	0.87	1.82	8538	1090	2	0	0	0	0	logfile
✔	7oCF	12806	2024-09-27	2021-04-26	3.6	3.48	—	3.5	0.018	0.95	0.0	0.11	14.25	0.00	2.067	5.05	0.00	4.2	95.8	0.0	0.18	0.68	0.78	3.00	3.5	0.004	0.82	2.0	0.05	14.77	0.00	2.208	6.97	2.42	2.4	97.6	0.0	1.33	1.24	0.69	0.82	2.40	17088	2298	15	0	30	0	0	logfile
✔	7WTG	32785	2024-09-23	2022-02-04	3.8	3.93	—	3.9	0.006	1.20	0.0	0.07	14.44	0.01	2.297	4.61	0.00	9.1	90.9	0.0	-2.94	0.67	0.73	2.60	3.9	0.004	0.78	0.0	0.05	16.24	0.01	2.571	10.76	3.06	10.5	89.3	0.2	-2.42	1.22	0.70	0.76	1.95	3318	425	3	0	0	0	0	logfile
✔	6DVW	8919	2024-09-29	2018-06-25	4.3	4.35	—	4.3	0.008	1.19	0.0	0.06	11.88	0.01	1.840	5.62	0.87	15.9	83.7	0.4	-5.79	0.68	0.80	—	4.3	0.003	0.78	0.0	0.04	13.35	0.00	2.358	10.84	0.09	13.4	86.4	0.2	-2.00	0.85	0.67	0.79	—	21004	2576	4	0	0	0	0	logfile
✔	7R19	14235	2024-09-30	2022-02-02	3.3	3.69	3.53	3.6	0.004	0.59	0.0	0.05	11.32	0.01	2.179	4.01	0.18	2.1	97.9	0.0	0.42	0.82	0.83	2.64	3.6	0.004	0.60	0.0	0.04	13.27	0.00	2.482	4.53	1.33	3.3	96.7	0.0	0.08	0.51	0.85	0.86	2.49	25388	3178	10	0	38	0	0	logfile
✔	7YP9	33996	2024-09-30	2022-08-03	3.58	3.68	3.59	3.7	0.003	0.66	0.0	0.05	14.96	0.01	2.140	5.57	0.08	3.4	96.6	0.0	-4.82	0.68	0.66	0.63	3.6	0.004	0.71	0.0	0.04	17.61	0.00	2.344	16.24	3.52	4.0	96.0	0.0	-1.14	1.27	0.74	0.76	1.23	24547	3013	10	61	3	0	0	logfile
✔	7Z2D	14462	2024-09-24	2022-02-26	3.38	3.18	3.47	3.3	0.004	0.66	0.0	0.04	16.35	0.01	2.187	7.33	0.00	3.9	96.1	0.0	-0.02	0.60	0.69	2.73	3.3	0.004	0.60	0.0	0.04	17.85	0.01	2.361	8.27	1.86	5.7	94.3	0.0	-0.39	0.34	0.60	0.73	2.52	8591	959	4	36	1	0	0	logfile
✔	6N38	9341	2024-09-30	2018-11-14	3.7	3.82	—	3.8	0.013	1.29	0.0	0.08	10.00	0.01	2.216	1.17	0.31	2.7	97.2	0.1	0.10	0.78	0.79	2.54	3.7	0.003	0.69	0.0	0.04	14.61	0.00	2.453	5.78	1.98	2.7	97.3	0.0	0.80	0.82	0.81	0.83	2.15	24456	3098	11	0	39	0	0	logfile
✔	7VLY	32031	2024-09-26	2021-10-05	2.45	2.52	—	2.5	0.002	0.61	0.0	0.04	17.02	0.01	2.232	6.18	2.49	4.0	96.0	0.0	1.19	0.72	0.85	2.83	2.5	0.003	0.60	0.0	0.04	16.23	0.01	2.405	5.26	1.90	5.0	95.0	0.0	1.88	0.90	0.74	0.88	2.71	13347	1773	18	0	3	30	0	logfile
✔	6X3T	22032	2024-09-28	2020-05-21	2.55	2.18	2.60	2.5	0.005	0.66	0.0	0.05	14.71	0.00	2.171	6.00	2.28	3.0	97.0	0.0	-0.78	0.73	0.82	4.33	2.5	0.003	0.62	0.0	0.04	15.71	0.00	2.537	5.88	3.61	2.7	97.3	0.0	1.02	0.37	0.76	0.84	4.23	17415	2121	18	0	27	0	0	logfile
✔	6SD5	10149	2024-09-26	2019-07-26	3.1	3.26	3.11	3.2	0.006	0.71	0.0	0.04	15.04	0.00	2.321	8.86	1.39	8.3	91.7	0.0	-5.48	0.67	0.85	3.48	3.3	0.003	0.66	0.0	0.04	16.97	0.00	2.518	9.46	5.87	3.0	97.0	0.0	-1.35	0.64	0.67	0.86	3.03	14212	1936	22	0	0	0	0	logfile
✔	5VMS	8712	2024-09-27	2017-04-28	3.7	4.22	—	4.2	0.007	1.47	12.0	0.07	12.69	0.00	2.234	6.34	0.00	3.2	96.8	0.0	2.06	0.56	0.76	1.80	4.2	0.003	0.72	0.0	0.04	16.45	0.00	2.358	9.06	2.83	2.8	97.2	0.0	3.22	0.79	0.59	0.80	1.63	14916	1936	12	0	12	0	0	logfile
✔	8CYR	27082	2024-09-23	2022-05-24	4.2	3.54	3.92	4.0	0.003	0.62	0.0	0.05	8.97	0.00	2.654	0.08	2.00	4.4	95.6	0.0	-2.37	0.46	0.55	—	3.9	0.004	0.75	0.0	0.05	12.56	0.00	2.410	11.21	0.00	8.2	91.8	0.0	-3.29	2.76	0.53	0.68	—	5964	864	12	0	0	0	0	logfile
✔	6TBU	10452	2024-09-27	2019-11-04	3.16	3.52	—	3.4	0.012	1.51	0.0	0.18	16.68	0.00	2.060	5.99	0.00	5.0	94.9	0.1	-1.99	0.72	0.80	3.61	3.4	0.003	0.72	0.0	0.15	14.62	0.00	2.438	9.51	1.22	4.1	95.9	0.0	1.27	0.84	0.70	0.84	3.10	13733	842	3	0	12	0	6645	logfile
✔	8GDB	29945	2024-09-24	2023-03-03	3.1	3.24	3.00	3.2	0.005	0.80	0.0	0.05	14.28	0.01	2.255	3.73	0.28	4.7	95.3	0.0	-0.50	0.74	0.84	3.99	3.2	0.003	0.54	0.0	0.04	14.74	0.00	2.515	2.65	1.39	4.1	95.9	0.0	1.06	1.11	0.76	0.87	3.11	7612	1037	6	0	1	0	0	logfile
✔	6WJV	21701	2024-09-28	2020-04-14	3.5	3.60	—	3.5	0.009	1.66	1.0	0.08	15.51	0.01	1.466	5.97	0.05	7.2	92.8	0.0	-5.50	0.75	0.66	0.87	3.5	0.003	0.76	0.0	0.04	16.94	0.00	2.445	9.71	2.85	7.4	92.6	0.0	-1.82	0.73	0.77	0.70	1.02	19593	2567	5	0	1	0	0	logfile

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