Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GKA	40181	2024-09-29	2023-03-17	2.55	2.76	2.62	2.8	0.001	0.38	0.0	0.03	13.14	0.00	2.291	7.21	0.54	3.2	96.8	0.0	0.61	0.63	0.78	3.74	2.8	0.003	0.62	0.0	0.04	17.39	0.00	2.337	7.91	1.71	5.0	95.0	0.0	1.08	1.60	0.64	0.82	3.40	21812	2500	8	0	34	0	0	logfile
✔	7VF9	31948	2024-09-30	2021-09-10	4.04	4.13	—	4.1	0.001	0.38	0.0	0.04	9.65	0.00	2.176	3.71	0.05	1.5	98.5	0.0	-4.44	0.74	0.74	—	4.1	0.007	0.82	0.0	0.05	12.45	0.01	1.956	8.23	0.09	6.5	93.5	0.0	-1.41	2.38	0.78	0.79	—	24247	3425	7	0	3	0	0	logfile
✔	7JSE	22451	2024-09-26	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.50	—	4.0	0.004	0.95	0.0	0.07	14.02	0.00	2.539	1.70	0.00	14.0	86.0	0.0	-1.86	2.74	0.88	0.61	—	13288	3168	24	32	0	0	0	logfile
✔	7oZP	13131	2024-09-25	2021-06-28	3.8	4.17	3.83	4.0	0.002	0.39	0.0	0.04	14.04	0.00	1.969	4.71	0.00	2.1	97.9	0.0	1.24	0.79	0.71	0.86	4.0	0.005	0.74	0.0	0.05	16.91	0.00	2.399	12.54	2.79	3.4	96.6	0.0	0.31	0.96	0.83	0.78	1.27	54330	6774	32	0	10	0	0	logfile
✔	6KS8	0760	2024-09-26	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.86	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.71	0.0	0.05	11.64	0.00	2.304	13.95	0.01	3.7	96.2	0.0	-0.28	1.86	0.81	0.72	—	61943	8120	16	0	0	0	0	logfile
✔	7Y5H	33620	2024-09-23	2022-06-17	3.72	4.13	3.68	4.1	0.002	0.39	0.0	0.04	12.51	0.00	2.030	3.76	0.00	0.5	99.5	0.0	0.06	0.63	0.77	1.35	4.1	0.003	0.64	0.0	0.04	15.59	0.00	2.018	5.85	1.52	1.7	98.3	0.0	1.57	1.09	0.66	0.80	1.24	4704	600	4	0	4	0	0	logfile
✔	6KS7	0759	2024-09-26	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.72	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.003	0.69	0.0	0.04	12.03	0.00	2.360	12.58	0.04	3.1	96.8	0.1	0.04	1.82	0.74	0.68	—	62022	8131	16	0	0	0	0	logfile
✔	7oZo	13130	2024-09-25	2021-06-28	3.8	4.06	3.82	3.9	0.002	0.39	0.0	0.04	14.07	0.00	1.993	4.62	0.00	2.1	97.9	0.0	1.21	0.79	0.71	0.70	3.9	0.006	0.84	1.0	0.05	17.05	0.01	1.552	18.47	3.19	4.1	95.9	0.0	-0.36	1.26	0.83	0.78	1.19	54330	6774	32	0	10	0	0	logfile
✔	6NF8	9362	2024-09-27	2018-12-19	3.48	3.99	—	3.6	0.001	0.39	0.0	0.03	17.55	0.00	1.916	3.08	0.58	10.4	88.3	1.3	-2.53	0.76	0.60	1.16	3.5	0.004	0.68	0.0	0.04	19.36	0.00	2.095	10.66	2.20	5.7	94.3	0.0	-0.27	3.19	0.84	0.79	1.28	65776	5509	33	952	147	0	0	logfile
✔	7ZPL	14857	2024-09-28	2022-04-27	3.12	3.95	3.13	3.2	0.002	0.39	0.0	0.04	14.56	0.00	2.178	5.65	0.00	2.2	97.8	0.0	0.80	0.92	0.85	2.46	3.2	0.003	0.61	0.0	0.04	15.70	0.00	2.067	6.43	1.26	2.5	97.5	0.0	1.04	3.48	0.93	0.89	2.35	19919	2422	9	24	1	0	0	logfile
✔	8BFA	16018	2024-09-23	2022-10-24	3.0	3.05	3.02	3.3	0.002	0.39	0.0	0.05	13.94	0.00	2.592	6.46	0.00	0.0	100.0	0.0	-3.13	0.47	0.82	5.29	3.3	0.003	0.48	0.0	0.05	17.15	0.00	2.606	4.85	0.71	2.2	97.8	0.0	-2.39	1.32	0.51	0.88	6.16	2860	380	10	0	0	0	0	logfile
✔	6KRE	0757	2024-09-26	2019-08-21	4.45	4.34	—	4.4	0.001	0.39	0.0	0.04	7.11	0.00	2.244	6.04	0.03	4.1	95.8	0.1	-3.50	0.61	0.56	—	4.4	0.003	0.74	0.0	0.05	12.33	0.00	2.251	12.92	0.05	4.0	95.9	0.1	-0.49	1.85	0.67	0.66	—	60321	7922	16	0	0	0	0	logfile
✔	6XLH	22244	2024-09-26	2020-06-28	2.83	2.93	—	2.9	0.001	0.39	0.0	0.04	7.61	0.00	2.093	5.99	0.13	1.5	98.5	0.0	-3.84	0.73	0.80	3.26	2.9	0.003	0.64	0.0	0.04	16.34	0.00	1.941	7.10	1.93	3.3	96.7	0.0	-0.57	0.89	0.77	0.88	3.70	13608	1675	6	0	6	0	0	logfile
✔	8AP8	15561	2024-09-26	2022-08-09	3.7	3.98	3.47	3.8	0.002	0.39	0.0	0.04	8.11	0.00	2.139	2.40	0.31	1.6	98.4	0.0	2.44	0.72	0.82	1.61	3.8	0.004	0.52	0.0	0.04	13.68	0.00	2.114	4.39	2.18	3.6	96.4	0.0	2.07	1.16	0.74	0.84	1.56	12083	767	5	0	0	0	6098	logfile
✔	7SAM	24952	2024-09-23	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	23.50	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.89	0.0	0.04	28.04	0.01	1.982	71.15	0.00	0.0	0.0	0.0	—	5.48	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	7Xo0	33332	2024-09-23	2022-04-30	3.0	2.48	1.85	3.1	0.001	0.39	0.0	0.05	16.62	0.00	2.280	4.76	0.00	5.0	95.0	0.0	-2.66	0.47	0.87	7.11	3.1	0.003	0.45	0.0	0.05	17.20	0.00	2.581	3.43	2.71	6.9	93.1	0.0	-2.65	0.30	0.46	0.87	6.85	2550	372	6	0	0	0	0	logfile
✔	6KRD	0756	2024-09-26	2019-08-21	4.38	4.25	—	4.4	0.001	0.39	0.0	0.04	7.15	0.00	2.226	5.80	0.00	4.5	95.5	0.1	-3.58	0.57	0.52	—	4.3	0.003	0.70	0.0	0.04	12.12	0.00	2.336	10.92	0.06	3.5	96.4	0.1	-0.26	1.82	0.65	0.63	—	61005	8006	16	0	0	0	0	logfile
✔	8H0P	34413	2024-09-24	2022-09-30	3.15	2.98	3.14	3.2	0.001	0.40	0.0	0.04	7.54	0.00	2.208	5.68	0.10	1.2	98.8	0.0	-2.49	0.52	0.65	1.60	3.2	0.003	0.58	0.0	0.04	13.61	0.00	2.502	7.92	2.04	2.9	97.1	0.0	-0.07	0.79	0.57	0.78	2.46	8932	1137	6	0	0	0	0	logfile
✔	7PGS	13394	2024-09-28	2021-08-15	3.4	3.61	3.34	3.4	0.002	0.40	0.0	0.03	10.77	0.00	1.972	3.57	0.66	1.2	98.8	0.0	-0.33	0.80	0.79	2.03	3.4	0.004	0.57	0.0	0.04	13.37	0.00	2.343	4.02	0.98	3.5	96.4	0.0	1.41	1.63	0.82	0.82	1.46	67202	4210	3	0	1	0	33807	logfile
✔	6HD5	0201	2024-09-25	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.79	0.0	0.04	11.83	0.00	2.476	16.34	0.00	5.6	94.2	0.2	-0.50	2.01	0.45	0.56	—	9707	1234	3	0	0	0	0	logfile

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