Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TTQ	41612	2024-09-28	2023-08-14	3.27	4.16	3.37	3.6	0.002	0.40	0.0	0.04	13.16	0.00	2.082	5.04	0.00	1.5	98.5	0.0	0.58	0.74	0.77	2.13	3.6	0.003	0.53	0.0	0.04	14.04	0.00	2.459	4.53	1.08	4.5	95.5	0.0	0.28	0.95	0.75	0.79	2.67	17632	1212	2	0	0	0	8353	logfile
✔	8TZV	41770	2024-09-23	2023-08-28	2.8	3.84	3.03	3.4	0.001	0.40	0.0	0.04	7.77	0.00	2.199	6.62	0.47	1.0	99.0	0.0	0.07	0.80	0.73	1.36	3.5	0.003	0.75	0.0	0.05	14.17	0.00	2.563	12.62	2.36	3.2	96.8	0.0	-0.07	3.16	0.82	0.76	1.55	5680	696	4	0	2	0	0	logfile
✘	8C8Y	16495	2024-09-29	2023-01-21	3.03	3.24	3.11	3.1	0.002	0.40	0.0	0.03	22.85	0.00	1.796	4.85	0.00	6.2	93.7	0.1	0.29	0.77	0.81	2.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	77316	2566	25	2667	0	0	0	logfile
✔	7XMR	33302	2024-09-24	2022-04-26	3.1	3.31	2.93	3.3	0.001	0.40	0.0	0.04	10.86	0.00	2.250	5.63	0.00	1.6	98.4	0.0	-3.39	0.52	0.64	1.08	3.3	0.003	0.68	0.0	0.04	14.69	0.00	2.528	9.64	3.16	3.4	96.6	0.0	0.07	0.65	0.59	0.74	1.63	6611	871	5	0	0	0	0	logfile
✔	8JEC	36185	2024-09-28	2023-05-15	3.1	3.61	3.15	3.5	0.002	0.40	0.0	0.04	9.75	0.00	2.196	4.85	1.03	4.1	95.8	0.1	0.28	0.70	0.82	2.48	3.5	0.002	0.56	0.0	0.04	12.55	0.00	2.592	5.48	1.53	4.0	95.9	0.1	1.83	0.48	0.72	0.83	1.56	19680	2632	4	0	0	0	0	logfile
✔	7LH3	23335	2024-09-25	2021-01-21	4.3	4.87	—	4.6	0.001	0.40	0.0	0.04	7.88	0.00	2.258	4.71	1.06	1.8	98.2	0.0	2.29	0.61	0.73	—	4.6	0.002	0.58	0.0	0.04	10.63	0.00	2.542	8.15	0.00	2.7	97.3	0.0	2.04	1.10	0.63	0.82	—	10452	1360	2	0	0	0	0	logfile
✔	7RZR	24775	2024-09-23	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.005	0.40	0.0	0.03	15.17	0.00	2.631	4.03	0.35	0.0	100.0	0.0	5.91	0.32	0.82	0.83	3.51	2448	324	6	0	0	0	0	logfile
✔	8CAN	16531	2024-09-28	2023-01-24	1.93	1.75	1.93	1.9	0.002	0.40	0.0	0.04	9.00	0.00	2.041	2.66	0.16	0.9	99.1	0.0	1.63	0.70	0.81	6.33	1.9	0.003	0.56	0.0	0.04	14.12	0.00	1.920	1.06	0.95	1.5	98.5	0.0	1.22	1.90	0.74	0.86	6.50	71225	4104	21	0	27	3170	33930	logfile
✔	7RZQ	24774	2024-09-23	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.002	0.29	0.0	0.03	14.97	0.00	2.630	4.28	1.07	0.0	100.0	0.0	6.40	0.29	0.81	0.82	1.34	2421	322	6	0	0	0	0	logfile
✔	6WCB	21605	2024-09-26	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.004	0.54	0.0	0.04	15.42	0.00	2.356	3.10	1.13	2.1	97.9	0.0	2.81	1.28	0.54	0.79	2.44	11647	734	6	0	7	40	5904	logfile
✔	7FiJ	31599	2024-09-23	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.6	0.004	0.80	0.0	0.05	11.52	0.00	2.490	9.16	7.50	11.3	88.7	0.0	-1.47	0.69	0.61	0.55	2.86	3061	561	1	0	0	0	0	logfile
✔	7TB3	25791	2024-09-23	2021-12-21	2.57	3.30	—	3.1	0.002	0.41	0.0	0.03	9.42	0.00	2.212	4.32	1.06	9.5	90.1	0.4	0.76	0.74	0.74	1.78	3.0	0.003	0.66	0.0	0.04	15.00	0.00	2.364	6.37	1.65	2.7	97.3	0.0	3.01	0.96	0.74	0.85	2.08	48000	5832	24	0	0	0	0	logfile
✔	8J8B	36066	2024-09-26	2023-05-01	2.43	3.24	2.54	3.1	0.002	0.41	0.0	0.04	9.83	0.00	2.210	5.68	0.15	3.4	96.6	0.0	1.04	0.81	0.87	3.99	3.0	0.003	0.54	0.0	0.04	12.78	0.00	2.571	3.53	0.23	4.6	95.4	0.0	0.70	1.23	0.81	0.88	3.79	12330	1518	2	0	0	0	0	logfile
✔	7PiM	13442	2024-09-26	2021-08-20	4.6	5.02	5.18	4.6	0.002	0.41	0.0	0.03	8.31	0.00	1.900	45.64	0.67	2.0	98.0	0.0	2.23	0.81	0.76	—	6.0	0.002	0.52	0.0	0.04	11.97	0.00	2.029	59.38	0.00	2.5	97.5	0.0	0.50	1.51	0.82	0.76	—	11844	1412	12	0	8	0	524	logfile
✔	8AA4	15293	2024-09-26	2022-06-29	3.1	3.54	2.92	3.2	0.001	0.41	0.0	0.04	7.46	0.00	2.240	3.52	0.00	2.7	97.2	0.1	0.39	0.73	0.88	4.17	3.2	0.003	0.54	0.0	0.04	10.29	0.00	2.564	2.25	0.54	4.0	95.8	0.1	-0.02	0.94	0.73	0.89	3.86	13616	1742	2	0	0	0	0	logfile
✔	7WKD	32565	2024-09-27	2022-01-09	3.01	2.29	—	3.1	0.007	0.41	1.0	0.04	7.82	0.00	1.978	6.84	0.31	1.4	98.6	0.0	-1.70	0.68	0.66	1.77	3.1	0.017	0.73	0.0	0.04	14.56	0.00	2.374	8.89	1.98	2.6	97.4	0.0	0.73	0.99	0.72	0.74	2.36	17530	1120	6	0	0	0	8727	logfile
✔	8oLG	16957	2024-09-23	2023-03-30	4.2	3.16	3.54	4.2	0.002	0.41	0.0	0.05	9.55	0.00	2.261	9.57	0.00	13.5	86.5	0.0	-4.82	0.25	0.63	—	4.2	0.006	0.92	0.0	0.05	15.70	0.00	2.530	19.49	0.00	17.8	82.2	0.0	-4.69	1.60	0.30	0.66	—	1490	195	5	0	0	0	0	logfile
✔	7ULW	26595	2024-09-28	2022-04-05	3.1	3.61	3.28	3.5	0.002	0.41	0.0	0.04	13.47	0.00	2.235	2.87	0.00	1.3	98.7	0.0	2.53	0.53	0.83	2.45	3.4	0.003	0.57	0.0	0.04	16.67	0.00	2.515	6.05	1.60	2.4	97.6	0.0	1.68	0.72	0.54	0.85	2.67	18766	2400	6	0	0	0	0	logfile
✔	6ZGG	11205	2024-09-30	2020-06-18	3.8	4.33	4.00	4.0	0.001	0.41	0.0	0.04	5.80	0.00	2.231	3.83	1.00	12.4	87.1	0.5	-2.52	0.84	0.74	0.73	4.0	0.003	0.65	0.0	0.04	11.39	0.00	2.442	5.49	2.00	4.6	95.4	0.0	-0.58	1.76	0.87	0.82	1.20	25096	3207	3	0	0	0	0	logfile
✔	7WoG	32651	2024-09-23	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.72	0.0	0.05	11.04	0.00	2.444	17.39	0.00	14.1	85.9	0.0	-2.82	0.98	0.54	0.54	—	3362	433	3	0	0	0	0	logfile

• ← previous
• Page 4 of 539
• next →