Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NF8	9362	2024-09-27	2018-12-19	3.48	3.99	—	3.6	0.001	0.39	0.0	0.03	17.55	0.00	1.916	3.08	0.58	10.4	88.3	1.3	-2.53	0.76	0.60	1.16	3.5	0.004	0.68	0.0	0.04	19.36	0.00	2.095	10.66	2.20	5.7	94.3	0.0	-0.27	3.19	0.84	0.79	1.28	65776	5509	33	952	147	0	0	logfile
✔	7JSE	22451	2024-09-26	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.50	—	4.0	0.004	0.95	0.0	0.07	14.02	0.00	2.539	1.70	0.00	14.0	86.0	0.0	-1.86	2.74	0.88	0.61	—	13288	3168	24	32	0	0	0	logfile
✘	5GW4	9540	2024-09-27	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.49	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	8HiA	34813	2024-09-24	2022-11-19	4.9	4.49	2.13	9.6	0.001	0.36	0.0	0.05	15.83	0.00	2.251	1.11	2.86	12.1	87.6	0.2	-4.39	0.47	0.07	—	9.3	0.004	0.74	0.0	0.05	14.73	0.01	2.306	25.00	4.76	4.8	95.2	0.0	-5.19	12.04	0.66	0.21	—	7200	460	20	0	0	0	3660	logfile
✔	6KS7	0759	2024-09-26	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.72	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.003	0.69	0.0	0.04	12.03	0.00	2.360	12.58	0.04	3.1	96.8	0.1	0.04	1.82	0.74	0.68	—	62022	8131	16	0	0	0	0	logfile
✔	8FEJ	29029	2024-09-25	2022-12-06	4.64	5.33	4.68	4.6	0.001	0.37	0.0	0.04	13.97	0.00	2.030	6.27	4.30	2.9	96.9	0.2	0.48	0.88	0.69	—	4.6	0.002	0.56	0.0	0.04	12.58	0.00	2.425	7.92	0.00	6.2	93.6	0.2	-0.58	1.70	0.91	0.74	—	10464	1368	3	0	0	0	0	logfile
✔	8H0P	34413	2024-09-24	2022-09-30	3.15	2.98	3.14	3.2	0.001	0.40	0.0	0.04	7.54	0.00	2.208	5.68	0.10	1.2	98.8	0.0	-2.49	0.52	0.65	1.60	3.2	0.003	0.58	0.0	0.04	13.61	0.00	2.502	7.92	2.04	2.9	97.1	0.0	-0.07	0.79	0.57	0.78	2.46	8932	1137	6	0	0	0	0	logfile
✔	7Xo0	33332	2024-09-23	2022-04-30	3.0	2.48	1.85	3.1	0.001	0.39	0.0	0.05	16.62	0.00	2.280	4.76	0.00	5.0	95.0	0.0	-2.66	0.47	0.87	7.11	3.1	0.003	0.45	0.0	0.05	17.20	0.00	2.581	3.43	2.71	6.9	93.1	0.0	-2.65	0.30	0.46	0.87	6.85	2550	372	6	0	0	0	0	logfile
✔	6Wi9	21683	2024-09-24	2020-04-09	4.3	4.37	4.24	4.3	0.002	0.50	0.0	0.04	12.85	0.00	2.214	5.38	0.00	4.2	95.8	0.0	-3.72	0.77	0.78	—	4.3	0.003	0.70	0.0	0.04	13.96	0.00	2.395	11.17	0.11	5.2	94.8	0.0	-0.70	0.72	0.78	0.78	—	8550	1108	6	0	0	0	0	logfile
✔	6PLP	20371	2024-09-26	2019-07-01	3.3	3.51	—	3.8	0.002	0.53	0.0	0.05	11.13	0.00	2.031	5.97	0.00	2.0	98.0	0.0	-4.40	0.44	0.72	3.32	3.7	0.003	0.66	0.0	0.04	13.15	0.00	2.537	8.10	2.71	2.9	97.1	0.0	-0.79	2.00	0.50	0.79	2.87	14240	1730	15	0	20	0	0	logfile
✔	7o4i	12719	2024-09-29	2021-04-06	3.2	3.14	3.22	3.2	0.002	0.48	0.0	0.04	14.70	0.00	1.885	4.69	0.03	2.4	97.6	0.0	1.16	0.77	0.78	2.18	3.2	0.004	0.62	0.0	0.04	17.13	0.00	1.958	6.95	1.42	3.0	97.0	0.0	0.77	0.67	0.79	0.83	2.17	73949	8892	43	134	22	0	0	logfile
✔	7WoC	32648	2024-09-23	2022-01-21	3.35	3.49	—	3.4	0.002	0.48	0.0	0.04	9.58	0.00	2.288	6.75	4.60	6.3	93.7	0.0	-4.80	0.72	0.76	2.37	3.4	0.004	0.73	0.0	0.05	15.16	0.00	2.491	9.10	4.21	10.3	89.7	0.0	-3.07	2.06	0.75	0.84	2.61	4746	610	4	0	1	0	0	logfile
✔	6UES	20755	2024-09-23	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	26.31	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.90	0.0	0.04	27.47	0.01	1.929	30.44	0.00	0.0	0.0	0.0	—	0.83	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	7PX8	13691	2024-09-29	2021-10-08	3.27	3.27	—	3.2	0.002	0.52	0.0	0.04	12.52	0.01	2.236	3.53	0.05	2.2	97.8	0.0	-0.37	0.78	0.86	3.66	3.2	0.002	0.51	0.0	0.04	13.55	0.00	2.580	3.43	0.72	2.5	97.5	0.0	-0.01	0.19	0.80	0.88	3.34	21409	2798	4	0	0	0	0	logfile
✔	8B40	15835	2024-09-26	2022-09-19	4.6	4.13	4.51	3.6	0.002	0.50	0.0	0.04	10.45	0.00	2.149	11.85	4.31	4.2	95.7	0.0	-0.38	0.77	0.69	—	3.6	0.002	0.62	0.0	0.04	10.97	0.00	2.027	11.60	0.00	5.1	94.9	0.0	-0.90	1.00	0.77	0.66	—	39466	4844	7	0	0	0	0	logfile
✔	7W0D	32239	2024-09-29	2021-11-18	4.18	4.33	—	3.7	0.002	0.58	0.0	0.04	16.44	0.00	2.067	15.76	0.05	5.0	95.0	0.0	-0.30	0.91	0.80	—	3.7	0.003	0.65	0.0	0.04	16.57	0.00	1.957	13.82	0.00	5.1	94.8	0.1	-0.53	0.40	0.91	0.81	—	20322	2233	8	104	4	0	0	logfile
✔	7oN1	12993	2024-09-25	2021-05-25	3.35	3.18	—	3.4	0.002	0.47	0.0	0.03	26.14	0.00	2.120	6.38	0.00	1.5	98.5	0.0	-0.25	0.82	0.83	1.11	3.4	0.005	0.60	0.0	0.04	27.24	0.00	2.109	4.65	1.88	2.9	97.1	0.0	2.39	1.33	0.84	0.90	1.68	11150	777	12	246	0	0	0	logfile
✔	7R88	24311	2024-09-25	2021-06-26	3.5	3.76	—	3.7	0.002	0.45	0.0	0.04	12.49	0.00	2.274	5.35	1.02	3.5	96.5	0.0	-1.50	0.69	0.85	2.38	3.7	0.002	0.58	0.0	0.04	14.97	0.00	2.421	4.56	2.29	4.1	95.9	0.0	1.46	1.01	0.70	0.88	2.68	10787	1368	4	0	0	0	0	logfile
✔	8D9L	27265	2024-09-23	2022-06-10	4.04	5.24	4.18	4.5	0.002	0.44	0.0	0.03	16.63	0.00	2.250	7.25	0.43	1.8	98.2	0.0	1.09	0.89	0.80	—	4.4	0.005	0.64	0.0	0.04	17.49	0.00	2.164	15.24	0.00	3.3	96.7	0.0	0.50	0.65	0.90	0.84	—	5757	553	4	65	1	0	0	logfile
✔	7R8D	24316	2024-09-24	2021-06-26	3.2	3.37	—	3.4	0.002	0.65	0.0	0.05	14.26	0.00	2.202	6.45	1.93	4.5	95.5	0.0	-1.18	0.61	0.83	1.57	3.3	0.004	0.62	0.0	0.04	15.28	0.00	2.592	6.56	4.08	4.5	95.5	0.0	0.67	0.91	0.63	0.87	2.02	8762	1090	4	0	8	0	0	logfile

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