Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GGV	40022	2024-09-23	2023-03-08	3.5	3.67	3.59	3.8	0.004	0.59	0.0	0.04	13.63	0.00	2.276	4.79	0.00	1.8	98.2	0.0	2.06	0.49	0.81	1.78	3.8	0.003	0.57	0.0	0.04	16.42	0.00	2.583	3.53	4.86	2.2	97.8	0.0	2.67	0.33	0.50	0.81	1.14	2064	281	2	0	1	0	0	logfile
✔	8GGW	40023	2024-09-23	2023-03-08	3.6	3.67	3.57	3.8	0.004	0.62	0.0	0.04	12.73	0.00	2.241	5.30	0.00	1.8	98.2	0.0	2.12	0.48	0.79	1.29	3.8	0.003	0.55	0.0	0.04	15.08	0.00	2.558	3.03	3.19	1.8	98.2	0.0	2.52	0.32	0.50	0.80	2.03	2079	281	2	0	1	0	0	logfile
✔	8GGQ	40017	2024-09-23	2023-03-08	3.4	3.52	3.32	3.5	0.004	0.55	0.0	0.04	12.05	0.00	2.313	2.87	0.00	0.7	99.3	0.0	2.40	0.54	0.85	2.97	3.5	0.003	0.47	0.0	0.04	13.61	0.00	2.571	2.16	2.40	0.4	99.6	0.0	2.87	0.22	0.53	0.85	2.69	2130	281	2	0	1	0	0	logfile
✔	8UNZ	42422	2024-09-24	2023-10-19	3.8	4.17	3.92	4.1	0.005	0.81	0.0	0.06	13.67	0.00	2.238	4.96	0.00	2.4	97.6	0.0	1.00	0.61	0.78	1.40	4.1	0.003	0.52	0.0	0.04	14.66	0.00	2.492	3.36	0.93	2.2	97.8	0.0	1.21	0.34	0.66	0.83	1.43	6329	898	6	0	2	0	0	logfile
✔	8GGo	40015	2024-09-23	2023-03-08	3.2	3.33	3.17	3.4	0.005	0.74	0.0	0.05	11.58	0.00	2.307	3.67	0.00	1.5	98.5	0.0	2.30	0.50	0.84	3.84	3.4	0.003	0.48	0.0	0.04	12.81	0.00	2.597	1.71	1.48	1.5	98.5	0.0	2.64	0.89	0.49	0.84	3.13	2095	279	2	0	1	0	0	logfile
✔	8GGN	40014	2024-09-23	2023-03-08	3.3	3.42	3.22	3.4	0.005	0.58	0.0	0.04	13.18	0.00	2.248	2.82	0.00	0.7	99.3	0.0	2.26	0.55	0.86	3.24	3.4	0.003	0.50	0.0	0.04	14.65	0.00	2.599	1.41	2.80	1.4	98.6	0.0	3.08	0.26	0.55	0.86	2.59	2168	285	2	0	1	0	0	logfile
✔	8Uo4	42427	2024-09-23	2023-10-19	4.0	4.28	3.99	4.2	0.004	0.72	0.0	0.04	12.00	0.00	2.322	5.46	0.00	3.2	96.8	0.0	-0.04	0.69	0.80	—	4.2	0.006	0.67	0.0	0.04	13.55	0.00	2.514	4.96	3.96	5.6	94.4	0.0	0.02	0.96	0.69	0.81	—	5702	910	6	0	3	0	0	logfile
✔	8GG7	29997	2024-09-24	2023-03-08	3.3	3.58	3.34	3.6	0.003	0.50	0.0	0.04	13.74	0.00	2.288	4.04	0.16	1.7	98.3	0.0	0.88	0.69	0.86	3.05	3.5	0.003	0.52	0.0	0.04	15.02	0.00	2.503	3.18	1.90	2.3	97.7	0.0	1.12	0.91	0.69	0.87	3.31	6687	903	6	0	2	1	0	logfile
✔	8GG0	29990	2024-09-24	2023-03-08	2.9	3.26	3.07	3.2	0.003	0.51	0.0	0.04	13.40	0.00	2.215	2.06	0.00	1.7	98.3	0.0	0.54	0.55	0.82	4.19	3.2	0.002	0.46	0.0	0.04	15.23	0.00	2.503	2.06	1.06	1.2	98.8	0.0	1.77	0.30	0.62	0.86	3.38	6745	897	6	0	2	5	0	logfile
✔	8GGP	40016	2024-09-23	2023-03-08	3.2	3.39	3.22	3.5	0.004	0.52	0.0	0.04	12.49	0.00	2.298	2.48	0.00	1.1	98.9	0.0	1.89	0.51	0.84	4.06	3.5	0.003	0.48	0.0	0.04	13.69	0.00	2.638	1.24	1.03	1.4	98.6	0.0	2.60	0.25	0.51	0.84	3.43	2075	280	2	0	1	0	0	logfile
✔	8GGL	40012	2024-09-23	2023-03-08	3.2	3.43	3.25	3.4	0.005	0.62	0.0	0.04	12.38	0.00	2.312	3.08	0.00	1.1	98.9	0.0	1.05	0.54	0.86	2.40	3.4	0.003	0.47	0.0	0.04	14.56	0.00	2.629	1.89	2.82	1.1	98.9	0.0	2.29	0.22	0.51	0.85	1.79	2151	284	2	0	1	1	0	logfile
✔	8GGU	40021	2024-09-23	2023-03-08	3.4	3.47	3.35	3.6	0.004	0.55	0.0	0.04	13.54	0.00	2.284	4.08	0.00	1.1	98.9	0.0	1.90	0.46	0.76	1.61	3.6	0.002	0.45	0.0	0.04	15.32	0.00	2.655	1.53	3.87	0.0	100.0	0.0	2.61	0.30	0.46	0.76	1.00	2053	281	2	0	1	0	0	logfile
✔	8GGA	40000	2024-09-24	2023-03-08	3.5	3.68	3.45	3.6	0.004	0.67	0.0	0.04	14.50	0.00	2.215	3.89	0.00	3.3	96.7	0.0	-0.34	0.69	0.83	2.47	3.6	0.005	0.61	0.0	0.04	15.04	0.00	2.438	3.66	1.49	4.4	95.6	0.0	0.41	0.93	0.69	0.85	2.75	6995	986	6	0	2	0	0	logfile
✔	8GG9	29999	2024-09-24	2023-03-08	3.4	3.65	3.44	3.6	0.004	0.68	0.0	0.04	14.83	0.00	2.198	4.21	0.00	2.6	97.4	0.0	0.44	0.70	0.86	3.22	3.6	0.003	0.50	0.0	0.04	15.75	0.00	2.432	3.01	1.59	2.1	97.9	0.0	1.31	0.29	0.68	0.85	2.74	7023	973	6	0	2	0	0	logfile
✔	8GGC	40002	2024-09-24	2023-03-08	3.4	3.86	3.56	3.8	0.004	0.73	0.0	0.05	14.24	0.00	2.250	6.39	0.19	2.4	97.6	0.0	-0.01	0.66	0.84	2.11	3.8	0.002	0.53	0.0	0.04	15.20	0.00	2.478	2.90	3.37	2.9	97.1	0.0	0.90	0.96	0.65	0.83	1.97	6515	932	6	0	2	0	0	logfile
✔	8GGB	40001	2024-09-24	2023-03-08	3.5	3.74	3.49	3.7	0.005	0.80	0.0	0.05	14.63	0.00	2.306	3.97	0.18	2.9	97.1	0.0	0.27	0.67	0.82	2.73	3.7	0.002	0.49	0.0	0.04	14.96	0.00	2.457	2.86	2.14	1.7	98.3	0.0	0.93	0.36	0.67	0.82	2.31	6775	966	6	0	2	0	0	logfile
✔	8GG8	29998	2024-09-24	2023-03-08	3.3	3.62	3.40	3.6	0.003	0.50	0.0	0.04	13.45	0.00	2.264	4.44	0.16	1.9	98.1	0.0	0.54	0.68	0.85	2.87	3.6	0.002	0.51	0.0	0.04	15.03	0.00	2.397	2.38	1.81	1.9	98.1	0.0	1.14	0.92	0.67	0.86	2.86	6611	906	6	0	2	0	0	logfile
✔	8GFX	29987	2024-09-24	2023-03-08	3.0	3.31	3.10	3.3	0.004	0.53	0.0	0.04	13.47	0.00	2.248	3.22	0.00	2.2	97.8	0.0	0.67	0.64	0.88	4.45	3.3	0.002	0.51	0.0	0.04	15.65	0.00	2.510	1.92	3.06	1.9	98.1	0.0	1.35	0.33	0.65	0.89	3.94	6725	896	6	0	2	1	0	logfile
✔	8CQB	16794	2024-09-24	2023-03-04	3.7	3.96	3.70	3.9	0.003	0.64	0.0	0.04	18.67	0.00	1.193	11.28	1.29	6.1	93.5	0.4	-0.44	0.68	0.74	1.89	3.9	0.003	0.77	0.0	0.04	19.04	0.00	1.910	12.06	1.53	6.2	93.4	0.4	-0.19	0.58	0.67	0.71	1.13	7688	956	6	2	4	0	0	logfile
✔	8GGY	40025	2024-09-23	2023-03-08	3.9	4.01	3.93	4.0	0.004	0.63	0.0	0.04	14.74	0.00	2.358	3.48	0.00	1.8	98.2	0.0	2.19	0.50	0.80	2.56	4.1	0.003	0.60	0.0	0.04	16.30	0.00	2.570	3.23	4.15	2.5	97.5	0.0	2.27	0.37	0.52	0.82	1.44	2096	281	2	0	1	0	0	logfile

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