Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oH0	12890	2024-09-24	2021-05-07	3.9	4.55	—	4.3	0.005	0.92	0.0	0.05	13.94	0.01	2.046	29.13	0.26	11.9	87.9	0.1	-5.70	0.80	0.71	1.16	4.3	0.003	0.79	0.0	0.05	15.91	0.01	2.113	16.30	2.48	7.7	92.3	0.0	-3.21	1.42	0.79	0.69	1.15	6830	870	3	0	0	0	0	logfile
✔	8DKM	27490	2024-09-23	2022-07-05	3.39	3.59	3.11	3.6	0.003	0.67	0.0	0.04	13.47	0.00	2.241	7.23	0.83	6.4	93.6	0.0	-0.94	0.62	0.84	2.67	3.6	0.003	0.58	0.0	0.04	15.57	0.00	2.604	5.51	3.32	6.2	93.8	0.0	-0.08	0.39	0.61	0.86	2.38	4383	553	4	0	1	0	0	logfile
✔	6SGS	10183	2024-09-25	2019-08-05	3.2	3.29	3.18	3.3	0.004	0.64	0.0	0.04	13.19	0.00	2.011	5.87	0.14	2.8	97.2	0.0	-3.26	0.57	0.69	0.97	3.3	0.003	0.56	0.0	0.04	15.74	0.00	2.248	5.83	1.43	2.2	97.8	0.0	1.24	1.36	0.63	0.83	2.20	54156	3528	8	0	0	0	27338	logfile
✔	6SE6	10152	2024-09-26	2019-07-29	3.5	4.16	—	3.9	0.010	1.00	0.0	0.06	27.96	0.01	2.247	3.86	0.00	1.2	98.8	0.0	-3.83	0.88	0.85	1.92	3.9	0.004	0.64	0.0	0.03	28.17	0.00	2.059	10.38	2.66	1.3	98.7	0.0	1.41	0.58	0.86	0.83	1.11	12068	771	11	290	0	0	0	logfile
✔	7LiD	23374	2024-09-26	2021-01-27	2.9	3.96	—	3.9	0.006	0.88	0.0	0.04	15.33	0.01	2.330	3.66	1.47	3.5	96.5	0.0	-2.01	0.69	0.76	0.95	3.9	0.003	0.64	0.0	0.04	17.15	0.00	2.618	5.45	1.47	2.7	97.3	0.0	2.72	0.58	0.51	0.69	0.84	12140	1524	8	0	4	0	0	logfile
✔	6T7S	10371	2024-09-29	2019-10-23	4.5	4.67	—	4.5	0.004	0.93	0.0	0.06	14.16	0.01	2.278	7.26	0.28	6.0	94.0	0.0	-4.74	0.65	0.77	—	4.5	0.004	0.82	0.0	0.04	13.23	0.00	2.396	14.26	0.12	5.4	94.5	0.1	-1.46	3.56	0.66	0.75	—	23436	3090	3	0	0	0	0	logfile
✔	8EPX	28534	2024-09-27	2022-10-06	3.15	3.30	3.06	3.2	0.004	0.58	0.0	0.04	24.05	0.00	1.297	7.63	4.99	5.1	94.9	0.0	-0.23	0.79	0.84	0.94	3.2	0.003	0.73	0.0	0.04	23.79	0.00	2.337	5.83	4.01	5.4	94.6	0.0	0.24	0.18	0.79	0.84	1.17	15457	1672	14	144	2	0	0	logfile
✔	7P3Q	13182	2024-09-25	2021-07-08	3.12	3.23	3.11	3.2	0.009	1.34	0.0	0.07	18.91	0.01	2.218	11.33	0.40	4.5	95.5	0.0	0.44	0.68	0.81	1.87	3.2	0.003	0.60	0.0	0.04	16.68	0.00	2.556	12.33	0.70	4.4	95.6	0.0	1.03	0.54	0.69	0.86	1.66	9632	1176	16	0	24	0	0	logfile
✔	7PV2	13664	2024-09-30	2021-10-01	3.2	3.39	—	3.3	0.011	0.71	0.0	0.08	14.85	0.00	1.971	4.86	0.00	3.9	96.1	0.0	-3.84	0.75	0.82	3.34	3.4	0.002	0.58	0.0	0.04	16.81	0.00	2.357	5.16	1.15	2.4	97.6	0.0	0.05	0.58	0.76	0.86	2.64	25440	3084	12	0	0	0	0	logfile
✔	7SK3	25171	2024-09-26	2021-10-19	3.8	4.06	—	4.0	0.005	0.68	0.0	0.07	13.11	0.00	2.143	5.05	0.00	5.0	95.0	0.0	0.15	0.69	0.82	2.20	4.0	0.003	0.52	0.0	0.04	13.89	0.00	2.354	5.71	1.92	4.5	95.5	0.0	0.15	0.40	0.70	0.82	1.91	13294	831	7	0	8	0	6491	logfile
✔	6SGT	10184	2024-09-24	2019-08-05	3.46	3.54	3.37	3.5	0.004	0.72	0.0	0.04	12.56	0.00	2.205	8.28	0.29	4.5	95.4	0.1	-4.71	0.65	0.79	2.46	3.5	0.004	0.64	0.0	0.04	15.52	0.00	2.091	6.90	1.74	4.7	95.3	0.0	-0.59	2.28	0.67	0.83	2.33	52180	3408	5	0	0	0	26299	logfile
✔	7K25	22643	2024-09-26	2020-09-08	2.9	3.06	2.74	3.0	0.009	0.94	0.0	0.05	17.78	0.01	2.084	10.20	9.18	8.9	90.6	0.4	-3.19	0.48	0.85	3.95	3.0	0.003	0.64	0.0	0.04	17.73	0.00	2.495	6.29	4.05	7.1	92.9	0.1	-1.15	1.19	0.47	0.85	3.47	14005	1796	5	0	0	0	0	logfile
✔	7RSQ	24677	2024-09-23	2021-08-11	3.8	4.03	3.73	4.1	0.008	0.80	0.0	0.05	12.74	0.00	2.360	4.01	2.88	3.0	97.0	0.0	-0.64	0.63	0.68	1.39	4.1	0.003	0.53	0.0	0.03	15.39	0.00	2.533	2.26	0.96	3.0	97.0	0.0	2.06	1.76	0.64	0.71	1.77	3970	246	1	0	0	0	1958	logfile
✔	6oWo	20215	2024-09-26	2019-05-10	3.2	3.34	3.21	3.3	0.009	0.99	0.0	0.05	9.50	0.01	2.261	3.86	0.25	3.3	96.6	0.1	-4.78	0.82	0.87	3.33	3.2	0.004	0.84	1.0	0.05	13.70	0.00	2.089	6.77	1.84	3.1	96.9	0.0	1.08	0.63	0.82	0.88	2.71	14276	1786	5	0	0	0	0	logfile
✔	8E27	27827	2024-09-23	2022-08-14	3.4	3.73	3.56	3.7	0.010	1.10	0.0	0.07	14.24	0.01	2.297	2.69	0.34	1.2	98.8	0.0	-0.92	0.71	0.84	2.46	3.7	0.003	0.58	0.0	0.04	16.23	0.00	2.583	3.71	1.69	2.5	97.5	0.0	0.45	0.53	0.69	0.84	2.44	5371	676	1	0	0	0	0	logfile
✔	7SV7	25445	2024-09-25	2021-11-18	3.8	3.26	—	3.9	0.003	0.94	0.0	0.04	12.83	0.00	2.003	1.99	0.69	2.2	97.8	0.0	-0.82	0.60	0.81	2.35	3.9	0.004	0.60	0.0	0.04	15.14	0.00	1.892	5.42	3.37	3.0	97.0	0.0	1.03	0.55	0.63	0.82	1.87	9673	1173	3	0	32	0	0	logfile
✔	7ZJ6	14742	2024-09-26	2022-04-08	2.6	2.32	2.61	2.6	0.013	1.77	0.0	0.09	18.23	0.01	2.035	1.04	0.46	3.9	96.1	0.0	-1.99	0.67	0.82	4.01	2.6	0.003	0.59	0.0	0.04	15.60	0.00	2.499	2.61	1.93	2.6	97.4	0.0	0.55	1.18	0.71	0.83	3.61	12282	1482	18	0	48	0	0	logfile
✔	7TYM	26185	2024-09-26	2022-02-13	3.4	3.43	—	3.5	0.002	0.54	0.0	0.04	15.94	0.00	2.028	8.12	0.00	7.1	92.8	0.1	-1.35	0.73	0.81	2.62	3.5	0.003	0.59	0.0	0.04	16.42	0.00	2.513	6.44	2.59	7.9	92.1	0.0	-1.61	1.56	0.72	0.82	3.15	12112	1542	2	0	0	0	0	logfile
✔	7ooA	13008	2024-09-27	2021-05-27	2.7	2.63	2.63	2.6	0.005	0.66	0.0	0.05	21.92	0.00	2.256	5.81	0.00	0.4	99.6	0.0	2.71	0.71	0.86	4.30	2.6	0.002	0.45	0.0	0.04	15.57	0.00	2.593	5.87	1.35	0.3	99.7	0.0	2.67	1.12	0.70	0.88	3.46	15610	1834	14	0	35	0	0	logfile
✔	7N58	24182	2024-09-25	2021-06-05	3.4	3.79	3.58	3.8	0.004	0.84	0.0	0.05	13.09	0.01	2.146	14.80	0.00	2.8	97.2	0.0	-0.83	0.61	0.67	1.16	3.8	0.003	0.65	0.0	0.04	16.21	0.00	2.552	8.73	1.69	5.3	94.7	0.0	0.64	0.56	0.64	0.72	1.06	9326	1200	2	0	0	0	0	logfile

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