Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	1oED	1044	2024-09-23	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	224.94	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.1	0.004	1.04	0.0	0.05	16.17	0.01	2.570	21.32	2.25	2.1	97.9	0.0	1.35	2.68	0.61	0.40	—	4926	636	5	0	0	0	0	logfile
✘	6MN7	9166	2024-09-29	2018-10-01	4.8	5.01	—	5.0	0.016	2.23	12.0	0.12	17.86	0.02	1.395	35.74	0.57	8.6	89.4	2.0	-2.34	0.50	0.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21447	2418	66	0	192	0	0	logfile
✔	8BY8	16324	2024-09-25	2022-12-12	2.5	3.35	2.68	3.1	0.002	0.50	0.0	0.04	13.68	0.00	1.849	5.96	2.50	3.5	96.4	0.1	0.08	0.60	0.19	2.90	3.1	0.003	0.55	0.0	0.04	14.50	0.00	2.338	5.37	1.34	3.8	96.1	0.1	0.33	0.98	0.76	0.73	2.99	38783	2568	2	0	0	0	19223	logfile
✔	8DHX	27437	2024-09-26	2022-06-28	2.92	3.26	3.25	6.7	0.004	0.82	0.0	0.04	17.61	0.00	2.218	6.05	1.95	1.8	97.7	0.6	3.55	0.41	0.20	4.09	3.3	0.003	0.62	0.0	0.03	18.30	0.00	2.625	6.06	2.27	2.3	97.7	0.0	5.48	0.44	0.70	0.78	3.35	34200	4152	24	0	0	0	0	logfile
✔	8SZ7	40902	2024-09-23	2023-05-27	2.84	3.08	2.87	3.6	0.003	0.46	0.0	0.04	9.67	0.00	2.393	1.99	0.00	0.9	99.1	0.0	1.11	0.17	0.20	2.22	3.2	0.003	0.62	0.0	0.04	12.99	0.00	2.516	3.73	1.36	1.3	98.7	0.0	2.29	1.13	0.44	0.67	0.78	4026	240	1	0	0	0	2021	logfile
✔	8J0o	35907	2024-09-29	2023-04-11	3.32	4.35	3.46	7.0	0.014	0.97	0.0	0.04	18.12	0.01	1.915	13.09	0.40	8.4	91.4	0.3	-1.15	0.52	0.21	0.30	4.0	0.005	1.10	0.0	0.05	17.49	0.01	2.317	20.74	3.60	9.7	89.9	0.3	-1.65	1.84	0.74	0.73	0.75	20986	2627	13	0	9	0	0	logfile
✔	7R4Q	14314	2024-09-24	2022-02-09	3.6	3.14	—	5.7	0.022	3.26	109.0	0.39	16.09	0.02	1.866	30.29	3.30	8.7	91.1	0.2	-2.35	0.48	0.21	-0.05	4.0	0.005	1.10	8.0	0.17	15.29	0.01	1.971	20.81	1.38	7.9	92.1	0.0	-1.91	1.65	0.62	0.55	0.51	51420	3414	13	0	43	0	24182	logfile
✔	7APK	11857	2024-09-29	2020-10-17	3.3	3.26	—	3.5	0.004	0.81	0.0	0.05	8.50	0.01	2.256	4.07	0.10	4.7	95.2	0.1	-2.73	0.41	0.22	0.13	3.0	0.004	0.72	0.0	0.04	13.07	0.00	2.485	9.88	1.20	5.7	94.1	0.1	1.06	1.59	0.50	0.44	0.84	72697	9893	30	0	74	0	0	logfile
✔	7oTi	13060	2024-09-24	2021-06-10	4.2	4.80	—	7.9	0.014	1.99	12.0	0.10	16.95	0.02	2.507	0.59	4.71	10.8	87.9	1.4	-3.63	0.36	0.23	—	4.9	0.003	0.81	0.0	0.04	14.41	0.00	2.422	13.39	0.00	6.3	93.3	0.4	-1.23	1.71	0.51	0.49	—	9171	1182	1	0	0	0	0	logfile
✔	8J0N	35906	2024-09-28	2023-04-11	3.47	4.45	3.63	7.0	0.007	0.83	0.0	0.04	18.25	0.01	2.136	9.82	0.75	8.2	91.5	0.3	-1.04	0.53	0.23	0.17	4.1	0.007	1.19	1.0	0.06	17.91	0.01	2.238	26.01	3.30	9.8	89.8	0.4	-2.01	2.08	0.73	0.72	0.44	18475	2301	12	0	9	0	0	logfile
✔	6Q2o	20576	2024-09-27	2019-08-08	3.65	3.77	—	3.9	0.004	0.79	0.0	0.05	8.54	0.01	1.534	3.25	0.12	5.6	94.4	0.0	-3.75	0.48	0.23	0.05	3.6	0.004	0.75	0.0	0.04	14.86	0.00	2.223	11.77	2.47	7.0	93.0	0.0	-1.66	2.07	0.68	0.65	0.67	15196	1900	8	0	20	0	0	logfile
✔	7LJ3	23388	2024-09-30	2021-01-28	2.9	2.92	—	3.4	0.005	0.72	0.0	0.04	20.50	0.00	1.041	27.61	3.30	3.6	96.0	0.4	0.29	0.10	0.23	-0.14	2.9	0.003	0.60	0.0	0.03	21.69	0.00	2.281	5.53	4.04	4.8	95.1	0.0	2.64	1.40	0.22	0.78	1.64	25714	2564	12	225	0	0	0	logfile
✔	8G5V	29756	2024-09-26	2023-02-14	3.0	2.99	4.36	3.8	0.004	0.61	0.0	0.04	12.94	0.01	2.223	7.63	0.00	2.9	97.1	0.0	2.14	0.25	0.24	0.28	3.1	0.003	0.75	0.0	0.04	16.67	0.01	2.467	11.22	1.11	2.3	97.7	0.0	1.37	3.07	0.47	0.78	2.28	13739	1718	12	0	0	0	0	logfile
✔	8UoY	42441	2024-09-26	2023-10-20	3.4	3.52	3.51	3.4	0.016	2.25	10.0	0.11	17.12	0.02	2.532	0.83	6.89	12.1	85.3	2.6	-3.89	0.21	0.24	0.07	3.4	0.003	0.74	0.0	0.04	17.61	0.00	2.251	11.83	6.01	10.6	89.2	0.2	-3.21	0.86	0.22	0.25	0.30	13188	872	2	0	0	0	6544	logfile
✔	8X7Q	38107	2024-09-23	2023-11-24	2.7	2.32	2.42	3.3	0.014	1.60	0.0	0.08	14.72	0.01	2.275	17.91	0.00	9.4	90.6	0.0	-4.07	0.18	0.24	0.92	3.0	0.005	0.79	0.0	0.05	17.61	0.00	2.605	9.89	9.74	6.8	93.2	0.0	-3.50	2.15	0.48	0.86	2.75	3936	550	14	0	4	0	0	logfile
✔	7BZX	30262	2024-09-23	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.9	0.005	1.11	0.0	0.05	8.68	0.00	2.286	14.37	0.00	21.3	78.7	0.0	-4.55	2.97	0.75	0.58	—	5652	1154	2	0	0	0	0	logfile
✔	7JSH	22454	2024-09-24	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.005	1.21	0.0	0.05	13.28	0.00	2.348	9.55	0.00	27.4	72.4	0.3	-5.22	6.13	0.73	0.61	—	7916	1904	8	15	0	0	0	logfile
✔	7DZW	30915	2024-09-26	2021-01-26	3.45	4.19	3.55	3.3	0.019	2.27	0.0	0.00	4.81	0.01	2.240	2.28	0.00	5.1	93.3	1.6	-1.27	0.44	0.25	—	3.3	0.004	0.95	0.0	0.00	6.22	0.00	2.310	1.46	0.00	17.8	82.1	0.1	-2.66	2.03	0.77	0.74	—	13452	3363	3	0	0	0	0	logfile
✔	8GTB	34248	2024-09-27	2022-09-08	3.43	3.83	2.04	5.0	0.007	0.71	0.0	0.04	12.85	0.00	2.213	7.43	0.00	3.1	96.9	0.0	-3.27	0.48	0.25	0.01	3.8	0.005	0.76	0.0	0.04	16.00	0.00	2.461	4.72	4.62	4.1	95.9	0.0	-2.06	2.56	0.75	0.87	1.48	17136	2340	18	0	0	0	0	logfile
✔	8SZ4	40901	2024-09-23	2023-05-26	2.86	3.08	2.87	3.2	0.003	0.57	0.0	0.04	9.74	0.00	2.230	2.07	0.00	2.0	98.0	0.0	-0.45	0.18	0.26	2.84	3.1	0.003	0.64	0.0	0.04	13.62	0.00	2.493	3.68	1.26	2.8	97.2	0.0	1.66	2.06	0.43	0.67	0.96	4346	259	1	0	0	0	2184	logfile

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