Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NF8	9362	2024-09-27	2018-12-19	3.48	3.99	—	3.6	0.001	0.39	0.0	0.03	17.55	0.00	1.916	3.08	0.58	10.4	88.3	1.3	-2.53	0.76	0.60	1.16	3.5	0.004	0.68	0.0	0.04	19.36	0.00	2.095	10.66	2.20	5.7	94.3	0.0	-0.27	3.19	0.84	0.79	1.28	65776	5509	33	952	147	0	0	logfile
✔	8C94	16501	2024-09-24	2023-01-21	3.8	4.29	4.13	3.8	0.002	0.41	0.0	0.03	22.44	0.00	1.610	7.44	0.00	5.3	94.7	0.0	0.23	0.79	0.79	1.17	3.9	0.005	0.65	0.0	0.03	22.91	0.00	2.010	15.97	3.39	8.9	91.0	0.0	-1.59	1.40	0.81	0.84	1.16	54560	2070	21	1787	0	0	0	logfile
✔	7Z4H	14497	2024-09-27	2022-03-03	3.49	4.59	3.66	3.8	0.003	0.45	0.0	0.03	16.01	0.00	2.043	9.94	1.25	2.0	98.0	0.0	1.67	0.90	0.83	1.71	3.8	0.002	0.50	0.0	0.03	17.28	0.00	2.536	8.63	1.09	2.2	97.8	0.0	1.70	1.52	0.91	0.86	1.80	13900	1334	4	142	0	0	0	logfile
✔	6NUD	0516	2024-09-28	2019-01-31	3.5	3.80	—	3.7	0.002	0.43	0.0	0.03	13.14	0.00	2.290	4.84	0.29	15.0	83.5	1.5	-5.22	0.53	0.46	0.65	3.7	0.003	0.78	0.0	0.04	17.67	0.00	2.435	10.16	2.64	9.1	90.9	0.0	-2.18	2.01	0.73	0.75	1.59	20831	2420	13	68	1	0	0	logfile
✔	8HAJ	34592	2024-09-27	2022-10-26	4.8	4.66	4.63	3.6	0.003	0.60	0.0	0.03	24.86	0.00	2.213	11.34	0.00	2.3	97.7	0.0	1.21	0.88	0.76	—	3.6	0.004	0.64	0.0	0.04	26.39	0.00	2.356	13.84	0.00	3.3	96.7	0.0	1.46	0.76	0.90	0.79	—	17214	1305	11	326	0	0	0	logfile
✔	7ZW1	14991	2024-09-26	2022-05-17	3.7	4.52	3.66	3.9	0.002	0.50	0.0	0.03	17.28	0.00	2.021	7.62	0.16	3.1	96.9	0.0	3.09	0.65	0.80	1.73	4.0	0.002	0.50	0.0	0.04	17.45	0.00	2.450	4.74	1.89	3.4	96.6	0.0	3.09	0.72	0.65	0.80	1.33	11807	760	3	0	0	0	5883	logfile
✔	8CWW	27030	2024-09-26	2022-05-19	2.74	3.44	2.94	3.3	0.003	0.48	0.0	0.03	24.38	0.00	2.368	2.74	0.25	2.6	97.4	0.0	0.45	0.86	0.87	3.79	3.3	0.004	0.55	0.0	0.03	25.71	0.00	2.366	3.02	1.47	3.2	96.8	0.0	2.13	0.45	0.90	0.91	2.85	13625	962	12	292	2	0	0	logfile
✔	8HAi	34591	2024-09-27	2022-10-26	4.7	4.54	4.59	4.0	0.003	0.58	0.0	0.03	24.52	0.00	2.249	10.79	0.00	1.5	98.5	0.0	1.74	0.83	0.72	—	4.0	0.004	0.66	0.0	0.04	26.20	0.00	2.246	15.30	0.09	2.6	97.4	0.0	1.43	1.68	0.86	0.80	—	16547	1310	11	294	0	0	0	logfile
✔	8E2J	27838	2024-09-24	2022-08-15	3.44	3.67	3.24	3.4	0.003	0.63	0.0	0.03	15.86	0.01	2.271	3.43	2.70	2.3	97.7	0.0	-0.36	0.44	0.67	0.61	3.4	0.003	0.47	0.0	0.02	17.86	0.00	2.280	7.99	2.36	1.2	98.8	0.0	4.33	1.68	0.45	0.67	0.86	6012	346	4	0	114	0	2694	logfile
✔	7TCP	25816	2024-09-27	2021-12-27	3.84	3.97	—	3.9	0.002	0.37	0.0	0.03	9.57	0.00	2.327	4.21	1.26	2.8	97.2	0.0	2.66	0.70	0.81	2.29	3.9	0.005	0.56	0.0	0.04	13.07	0.00	2.214	4.68	2.73	4.0	96.0	0.0	2.25	0.27	0.71	0.83	2.45	14992	1912	12	0	12	0	0	logfile
✔	7Z1T	14452	2024-09-28	2022-02-25	2.26	2.85	2.32	2.6	0.003	0.55	0.0	0.03	15.04	0.00	2.031	9.13	0.00	1.1	98.9	0.0	3.21	0.75	0.87	2.74	2.6	0.004	0.52	0.0	0.04	15.86	0.00	2.616	6.00	1.72	1.1	98.9	0.0	3.76	1.30	0.67	0.92	3.21	18492	2268	12	0	0	0	0	logfile
✔	8C91	16498	2024-09-26	2023-01-21	4.19	4.74	4.70	4.2	0.001	0.36	0.0	0.03	22.46	0.00	1.896	5.51	0.07	3.8	96.1	0.2	0.39	0.84	0.79	—	4.2	0.005	0.68	0.0	0.04	23.84	0.01	1.984	23.33	0.00	9.2	90.7	0.1	-1.82	0.91	0.86	0.85	—	59110	1860	18	2077	0	0	0	logfile
✔	8C92	16499	2024-09-24	2023-01-21	3.79	4.24	4.02	3.8	0.002	0.38	0.0	0.03	22.72	0.00	1.872	5.69	0.00	4.5	95.4	0.1	0.46	0.83	0.79	1.60	3.8	0.006	0.69	0.0	0.04	23.31	0.01	1.963	16.87	3.31	8.3	91.7	0.0	-1.28	0.58	0.85	0.84	1.86	53489	1700	17	1873	0	0	0	logfile
✘	8C8Y	16495	2024-09-29	2023-01-21	3.03	3.24	3.11	3.1	0.002	0.40	0.0	0.03	22.85	0.00	1.796	4.85	0.00	6.2	93.7	0.1	0.29	0.77	0.81	2.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	77316	2566	25	2667	0	0	0	logfile
✔	8F6K	28886	2024-09-27	2022-11-16	3.46	3.70	3.47	3.7	0.002	0.50	0.0	0.03	14.25	0.00	1.909	10.84	0.00	6.0	93.5	0.5	-0.45	0.53	0.73	2.16	3.7	0.003	0.56	0.0	0.03	15.90	0.00	1.870	10.45	2.31	7.2	92.4	0.4	0.97	0.51	0.49	0.73	2.32	17298	1132	8	0	4	0	8586	logfile
✔	8C90	16497	2024-09-26	2023-01-21	3.15	3.51	3.31	3.1	0.002	0.38	0.0	0.03	22.69	0.00	1.866	5.45	0.00	5.1	94.8	0.0	0.48	0.79	0.79	1.77	3.2	0.005	0.69	1.0	0.04	23.08	0.00	2.017	11.12	3.61	7.6	92.4	0.0	-1.09	0.54	0.81	0.85	1.96	64726	2183	22	2219	0	0	0	logfile
✔	6NEQ	9358	2024-09-27	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	17.57	0.00	1.949	3.29	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.005	0.74	0.0	0.04	19.82	0.00	2.015	11.28	2.57	6.4	93.6	0.0	-0.50	2.00	0.85	0.85	1.53	65776	5509	33	952	147	0	0	logfile
✔	8G86	29837	2024-09-26	2023-02-17	2.3	2.24	2.41	2.5	0.003	0.50	0.0	0.03	27.26	0.00	2.275	6.71	0.95	0.9	99.1	0.0	1.60	0.69	0.83	5.02	2.5	0.004	0.62	0.0	0.04	28.89	0.00	2.104	7.04	3.64	1.2	98.8	0.0	2.56	0.91	0.69	0.85	4.76	11972	759	10	290	0	0	0	logfile
✔	7PGS	13394	2024-09-28	2021-08-15	3.4	3.61	3.34	3.4	0.002	0.40	0.0	0.03	10.77	0.00	1.972	3.57	0.66	1.2	98.8	0.0	-0.33	0.80	0.79	2.03	3.4	0.004	0.57	0.0	0.04	13.37	0.00	2.343	4.02	0.98	3.5	96.4	0.0	1.41	1.63	0.82	0.82	1.46	67202	4210	3	0	1	0	33807	logfile
✔	6HD5	0201	2024-09-25	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.79	0.0	0.04	11.83	0.00	2.476	16.34	0.00	5.6	94.2	0.2	-0.50	2.01	0.45	0.56	—	9707	1234	3	0	0	0	0	logfile

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