Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iZY	35877	2024-09-27	2023-04-09	2.5	2.54	2.78	2.6	0.006	0.65	0.0	0.03	18.00	0.00	1.956	7.21	0.71	3.2	96.8	0.0	2.64	0.48	0.78	2.29	2.6	0.003	0.52	0.0	0.03	18.00	0.00	2.423	4.41	1.78	2.9	97.1	0.0	2.77	1.49	0.51	0.80	2.16	16776	1004	8	0	8	0	8360	logfile
✔	7Uo2	26638	2024-09-24	2022-04-12	3.1	3.75	—	3.0	0.002	0.55	0.0	0.03	26.44	0.00	2.033	10.61	2.04	14.5	83.6	1.8	-3.16	0.85	0.73	1.50	3.0	0.008	1.02	0.0	0.05	27.18	0.01	1.819	28.46	5.10	15.5	84.5	0.0	-3.23	0.75	0.87	0.81	2.13	6735	112	3	271	3	0	0	logfile
✘	6WQN	21872	2024-09-30	2020-04-29	2.9	2.43	2.85	2.8	0.003	0.49	3.0	0.03	23.04	0.00	1.951	9.03	2.31	2.9	97.1	0.0	-3.39	0.75	0.85	3.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	80700	2646	28	2798	1	0	0	logfile
✔	6WFQ	21652	2024-09-23	2020-04-03	3.9	4.88	3.77	3.9	0.002	0.49	0.0	0.03	16.90	0.00	2.265	8.11	0.80	4.3	95.7	0.0	-2.49	0.84	0.78	0.76	3.9	0.004	0.85	0.0	0.04	19.05	0.00	2.455	12.61	2.93	5.4	94.6	0.0	-0.11	0.97	0.85	0.80	0.54	4164	447	4	30	0	0	0	logfile
✔	7XSM	33427	2024-09-26	2022-05-14	4.01	4.70	4.03	4.0	0.002	0.47	0.0	0.03	24.50	0.00	1.969	7.06	0.00	0.0	0.0	0.0	—	0.90	0.75	—	4.0	0.007	0.78	0.0	0.04	26.36	0.01	1.865	41.31	0.00	0.0	0.0	0.0	—	1.71	0.92	0.82	—	12464	0	1	388	0	0	4165	logfile
✔	7TTW	26125	2024-09-30	2022-02-02	2.9	2.35	2.83	2.8	0.003	0.54	0.0	0.03	22.87	0.00	2.065	3.74	0.04	4.3	95.7	0.0	-2.03	0.71	0.80	3.36	2.8	0.004	0.71	0.0	0.04	23.04	0.01	2.152	3.47	3.82	5.4	94.6	0.0	-2.01	0.25	0.73	0.86	3.00	80853	2661	27	2801	0	0	0	logfile
✔	7RZQ	24774	2024-09-23	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.002	0.29	0.0	0.03	14.97	0.00	2.630	4.28	1.07	0.0	100.0	0.0	6.40	0.29	0.81	0.82	1.34	2421	322	6	0	0	0	0	logfile
✔	8ET7	28587	2024-09-24	2022-10-16	3.77	4.05	3.85	4.0	0.003	0.49	0.0	0.03	11.06	0.00	2.342	3.90	0.24	3.2	96.8	0.0	1.90	0.49	0.70	1.68	4.0	0.003	0.54	0.0	0.03	15.63	0.00	2.406	6.34	2.83	4.0	96.0	0.0	2.28	1.49	0.48	0.71	1.46	8111	532	3	0	3	0	4007	logfile
✔	7E9C	31029	2024-09-29	2021-03-04	3.5	4.28	3.62	4.0	0.003	0.58	0.0	0.03	26.94	0.00	2.221	12.74	0.14	3.3	96.7	0.0	0.16	0.78	0.69	0.28	4.0	0.004	0.67	0.0	0.04	28.45	0.00	2.157	14.61	4.84	4.6	95.4	0.0	0.12	1.64	0.83	0.79	0.15	12338	898	11	260	0	0	0	logfile
✔	8CZi	27098	2024-09-23	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.003	0.38	0.0	0.03	15.19	0.00	2.450	4.09	1.01	0.0	100.0	0.0	5.82	0.85	0.82	0.84	2.06	2550	339	6	0	0	0	0	logfile
✔	6XMG	22258	2024-09-24	2020-06-30	4.8	8.26	—	3.9	0.002	0.53	0.0	0.03	21.64	0.00	2.187	10.77	0.00	6.7	93.3	0.0	-2.01	0.90	0.74	—	3.4	0.004	0.74	0.0	0.04	22.79	0.01	2.016	31.79	0.20	10.2	89.8	0.0	-2.00	0.73	0.90	0.77	—	8361	638	4	154	1	0	0	logfile
✔	7oQZ	13035	2024-09-24	2021-06-04	3.27	3.59	3.75	3.8	0.009	0.98	0.0	0.03	14.99	0.00	2.257	3.35	0.51	1.3	98.7	0.0	4.83	0.61	0.78	2.67	3.8	0.004	0.78	0.0	0.04	17.77	0.00	2.311	10.98	4.08	2.9	97.1	0.0	3.86	0.75	0.62	0.81	2.33	7996	948	8	0	16	0	0	logfile
✔	8CVi	27008	2024-09-27	2022-05-18	3.4	3.54	3.20	3.4	0.003	0.49	0.0	0.03	13.53	0.00	2.073	8.79	0.05	4.0	95.9	0.1	1.49	0.55	0.83	1.22	3.4	0.004	0.74	3.0	0.04	16.52	0.00	2.152	8.87	2.09	4.1	95.9	0.0	3.44	2.21	0.58	0.85	0.91	66030	8856	33	0	0	0	0	logfile
✔	7RZT	24777	2024-09-23	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.1	0.003	0.32	0.0	0.03	15.49	0.00	2.612	5.44	0.00	0.0	100.0	0.0	6.18	0.22	0.80	0.83	2.98	2451	324	6	0	0	0	0	logfile
✔	7RZS	24776	2024-09-23	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.003	0.41	0.0	0.03	16.11	0.00	2.489	3.44	1.42	0.0	100.0	0.0	5.54	0.87	0.79	0.82	1.14	2445	324	6	0	0	0	0	logfile
✔	6WQQ	21873	2024-09-30	2020-04-29	3.1	2.53	3.04	3.0	0.002	0.45	2.0	0.03	22.73	0.00	2.203	3.54	0.36	3.9	96.1	0.0	-4.07	0.73	0.80	2.74	3.0	0.004	0.71	0.0	0.04	23.32	0.01	1.968	4.74	5.33	6.5	93.5	0.0	-2.80	0.32	0.74	0.82	2.54	81134	2671	28	2809	1	0	0	logfile
✔	8G88	29843	2024-09-26	2023-02-17	4.8	7.18	4.63	3.2	0.004	0.60	0.0	0.03	27.72	0.00	2.275	7.12	0.93	1.0	99.0	0.0	1.45	0.78	0.60	—	3.2	0.004	0.66	0.0	0.04	28.88	0.00	2.084	17.73	0.00	2.3	97.7	0.0	1.40	1.98	0.91	0.80	—	13995	891	11	336	0	0	0	logfile
✔	7QEY	13944	2024-09-25	2021-12-03	2.0	2.46	—	2.2	0.005	0.85	0.0	0.03	10.53	0.00	2.199	3.57	2.35	1.7	98.3	0.0	1.74	0.77	0.90	5.27	2.2	0.003	0.68	0.0	0.04	13.40	0.00	2.548	3.51	2.04	2.1	97.9	0.0	3.40	0.99	0.78	0.92	3.80	9467	1092	18	0	30	281	0	logfile
✔	7PiM	13442	2024-09-26	2021-08-20	4.6	5.02	5.18	4.6	0.002	0.41	0.0	0.03	8.31	0.00	1.900	45.64	0.67	2.0	98.0	0.0	2.23	0.81	0.76	—	6.0	0.002	0.52	0.0	0.04	11.97	0.00	2.029	59.38	0.00	2.5	97.5	0.0	0.50	1.51	0.82	0.76	—	11844	1412	12	0	8	0	524	logfile
✔	6T9L	10415	2024-09-28	2019-10-28	3.6	3.74	3.53	3.6	0.002	0.47	0.0	0.03	22.57	0.00	2.136	7.11	0.07	1.1	98.9	0.0	-1.63	0.74	0.68	0.82	3.6	0.003	0.62	0.0	0.04	24.77	0.00	2.030	7.29	2.98	2.3	97.7	0.0	0.98	0.81	0.84	0.84	1.12	18157	1532	18	290	8	0	0	logfile

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