Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7R4T	14316	2024-09-24	2022-02-09	2.75	2.72	2.62	2.8	0.011	1.77	0.0	0.09	11.86	0.01	2.520	0.00	0.00	3.8	96.2	0.0	-2.02	0.42	0.84	4.94	2.8	0.003	0.54	0.0	0.05	15.84	0.00	2.633	1.13	0.76	1.1	98.9	0.0	-1.54	1.59	0.42	0.89	5.95	7074	456	6	0	0	0	3606	logfile
✔	7QKM	14047	2024-09-23	2021-12-17	2.66	2.80	2.61	2.7	0.010	1.89	1.0	0.11	12.52	0.01	2.548	0.00	0.00	7.2	92.8	0.0	-1.95	0.42	0.86	6.21	2.7	0.002	0.57	0.0	0.05	16.47	0.00	2.399	1.58	0.34	0.9	99.1	0.0	-1.59	1.02	0.38	0.89	5.86	5070	330	6	0	0	0	2634	logfile
✔	8oRF	17122	2024-09-23	2023-04-13	2.5	2.71	2.32	2.7	0.010	1.27	0.0	0.07	11.76	0.01	2.508	0.00	0.00	5.1	94.9	0.0	-2.82	0.31	0.74	5.59	2.7	0.005	0.63	0.0	0.05	16.00	0.00	2.415	3.44	1.89	5.4	94.6	0.0	-3.53	1.09	0.38	0.82	5.36	4653	303	3	0	0	0	2382	logfile
✘	7QL3	14062	2024-09-23	2021-12-19	3.32	3.47	3.01	3.5	0.011	2.01	8.0	0.11	12.27	0.01	2.489	0.00	0.00	7.7	92.3	0.0	-3.47	0.46	0.82	4.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3246	426	6	0	0	0	0	logfile
✔	7QKG	14041	2024-09-23	2021-12-17	3.36	3.19	3.09	3.4	0.010	2.03	0.0	0.10	10.76	0.01	2.528	0.00	0.00	6.4	93.6	0.0	-1.98	0.38	0.80	4.23	3.4	0.002	0.57	0.0	0.05	13.72	0.00	2.634	1.62	0.00	4.5	95.5	0.0	-1.18	0.85	0.34	0.81	4.45	2469	162	3	0	0	0	1278	logfile
✔	7UXU	26862	2024-09-25	2022-05-06	2.74	3.09	2.80	3.1	0.007	1.01	0.0	0.06	17.35	0.01	2.519	0.00	0.00	1.9	98.1	0.0	-0.46	0.58	0.88	5.36	3.0	0.003	0.56	0.0	0.04	17.33	0.00	2.547	0.57	0.41	2.1	97.9	0.0	0.80	1.30	0.54	0.86	4.02	8776	536	8	0	4	0	4268	logfile
✔	7QL2	14061	2024-09-23	2021-12-19	2.95	2.96	2.65	3.1	0.010	2.11	2.0	0.11	10.98	0.01	2.674	0.00	0.00	7.6	92.4	0.0	-2.82	0.30	0.74	4.50	3.4	0.003	0.59	0.0	0.05	12.42	0.00	2.628	3.50	1.48	13.2	86.8	0.0	-3.47	1.15	0.24	0.74	4.90	2286	150	3	0	0	0	1179	logfile
✔	8oRG	17123	2024-09-23	2023-04-13	2.3	2.70	2.18	2.6	0.010	1.26	0.0	0.08	11.92	0.01	2.462	0.00	0.00	2.4	97.6	0.0	-2.52	0.32	0.76	4.82	2.6	0.004	0.61	0.0	0.05	16.55	0.00	2.396	1.01	2.63	1.6	98.4	0.0	-2.90	1.13	0.37	0.82	4.32	3966	258	3	0	0	0	2025	logfile
✔	7QK1	14028	2024-09-23	2021-12-17	3.03	3.20	2.13	3.2	0.011	1.97	2.0	0.11	12.98	0.01	2.502	0.00	0.00	5.5	94.5	0.0	-1.61	0.48	0.84	4.10	3.2	0.004	0.74	0.0	0.05	16.46	0.00	2.588	3.70	3.28	3.0	97.0	0.0	-1.65	2.23	0.42	0.84	4.21	3444	450	6	0	0	0	0	logfile
✔	8KB5	37070	2024-09-26	2023-08-03	2.26133	2.35	2.23	2.3	0.007	0.98	0.0	0.05	28.08	0.01	2.377	0.00	0.00	0.7	99.3	0.0	2.15	0.79	0.85	3.73	2.3	0.005	0.61	0.0	0.04	28.30	0.00	2.530	3.62	2.07	0.8	99.2	0.0	2.76	0.23	0.78	0.85	3.64	11953	758	10	290	0	0	0	logfile
✔	7QJY	14026	2024-09-23	2021-12-17	3.14	2.93	3.08	3.1	0.011	1.87	0.0	0.09	12.32	0.01	2.519	0.00	0.25	5.7	94.3	0.0	-2.50	0.38	0.82	5.27	3.1	0.004	0.72	0.0	0.05	16.69	0.00	2.422	4.70	1.01	2.1	97.9	0.0	-2.17	2.62	0.35	0.82	3.93	3444	450	6	0	0	0	0	logfile
✔	7N9Q	24259	2024-09-24	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.5	0.003	1.00	0.0	0.00	5.05	0.00	2.580	6.76	0.00	12.3	86.7	0.9	-4.51	2.40	0.85	0.81	—	6945	2315	1	0	0	0	0	logfile
✔	7NCH	12266	2024-09-25	2021-01-28	3.84	3.76	3.69	3.8	0.013	1.61	2.0	0.10	14.68	0.00	2.485	0.00	0.19	9.4	90.6	0.0	-3.70	0.60	0.45	2.36	3.8	0.003	0.65	2.0	0.05	15.71	0.00	2.361	6.57	1.48	10.8	89.2	0.0	-3.88	1.64	0.63	0.51	2.62	11292	816	12	0	0	0	5796	logfile
✔	8YBJ	39119	2024-09-26	2024-02-14	2.38	2.51	2.33	2.5	0.007	0.96	0.0	0.05	28.23	0.01	2.443	0.00	0.00	0.7	99.3	0.0	2.32	0.77	0.84	4.20	2.5	0.004	0.58	0.0	0.03	28.34	0.01	2.521	3.22	2.07	0.5	99.5	0.0	2.74	0.31	0.76	0.84	3.76	11953	758	10	290	0	0	0	logfile
✔	7NCA	12264	2024-09-25	2021-01-28	3.47	3.58	3.04	3.6	0.012	2.04	0.0	0.08	10.64	0.01	2.645	0.00	0.19	5.5	94.5	0.0	-2.04	0.73	0.85	4.45	3.7	0.003	0.54	0.0	0.05	13.26	0.00	2.554	1.15	1.36	4.4	95.6	0.0	-3.14	0.75	0.69	0.84	3.59	10428	732	12	0	0	0	5376	logfile
✔	7QJW	14024	2024-09-24	2021-12-17	2.81	2.81	1.88	2.9	0.012	2.09	0.0	0.10	11.96	0.01	2.556	0.00	0.00	2.3	96.3	1.4	-1.19	0.34	0.72	5.41	2.8	0.002	0.58	0.0	0.05	15.08	0.00	2.535	1.57	0.51	3.2	96.8	0.0	-1.43	1.47	0.38	0.77	5.07	7032	450	6	0	0	0	3588	logfile
✔	7QVC	14174	2024-09-23	2022-01-21	2.64	2.62	2.62	2.6	0.012	2.09	10.0	0.12	15.49	0.01	2.525	0.00	0.53	5.8	94.2	0.0	-2.45	0.43	0.86	7.41	2.6	0.008	0.83	0.0	0.06	18.13	0.00	2.552	9.38	5.29	5.5	94.5	0.0	-2.39	0.99	0.42	0.90	5.79	3255	405	3	0	0	0	0	logfile
✔	7QK3	14030	2024-09-23	2021-12-17	2.44	2.73	2.35	2.7	0.010	2.07	0.0	0.11	12.55	0.01	2.519	0.00	0.00	3.4	96.6	0.0	-3.04	0.38	0.77	5.65	2.7	0.003	0.75	0.0	0.05	16.56	0.00	2.540	2.19	1.28	2.8	97.2	0.0	-2.63	2.36	0.40	0.81	4.86	2742	183	3	0	0	0	1407	logfile
✔	7JSE	22451	2024-09-26	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.50	—	4.0	0.004	0.95	0.0	0.07	14.02	0.00	2.539	1.70	0.00	14.0	86.0	0.0	-1.86	2.74	0.88	0.61	—	13288	3168	24	32	0	0	0	logfile
✔	7ZJ2	14739	2024-09-23	2022-04-08	3.32	3.56	—	3.6	0.014	2.21	0.0	0.08	15.29	0.01	2.548	0.00	0.00	2.3	97.7	0.0	-3.75	0.47	0.78	4.64	3.6	0.004	0.72	0.0	0.03	16.81	0.00	2.560	7.52	7.47	2.7	97.3	0.0	-3.51	1.45	0.42	0.75	4.79	3792	540	12	0	0	0	0	logfile

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