Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7P13	13154	2024-09-26	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	2.1	0.002	0.44	0.0	0.03	17.09	0.00	2.472	15.03	1.44	2.3	97.7	0.0	5.41	0.51	0.83	0.87	3.25	13727	1743	7	0	0	0	154	logfile
✘	8BQV	16188	2024-09-24	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.13	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✔	8PNV	17786	2024-09-26	2023-07-02	2.048	1.96	2.05	2.0	0.004	0.66	0.0	0.04	17.46	0.01	2.040	3.74	2.87	1.1	98.9	0.0	2.57	0.79	0.86	5.51	2.0	0.004	0.64	0.0	0.04	16.29	0.00	2.491	3.10	2.63	1.5	98.5	0.0	2.14	1.01	0.79	0.87	5.49	13098	1626	30	0	6	522	0	logfile
✔	8C4C	16424	2024-09-25	2023-01-03	2.7	1.97	2.55	2.5	0.004	0.59	0.0	0.04	15.85	0.00	1.875	3.52	0.89	2.3	97.6	0.1	1.30	0.63	0.80	4.55	2.3	0.005	0.68	0.0	0.04	17.05	0.00	1.744	3.79	2.21	3.3	96.6	0.1	0.63	0.95	0.69	0.83	4.33	56164	3584	20	0	24	0	27864	logfile
✔	7SiL	25143	2024-09-26	2021-10-14	2.7	1.97	—	1.5	0.004	0.70	0.0	0.05	13.55	0.00	2.160	6.65	0.15	2.1	97.9	0.0	0.60	0.75	0.72	3.10	1.6	0.003	0.62	0.0	0.04	15.44	0.00	2.382	6.81	1.47	1.9	98.1	0.0	0.57	0.93	0.77	0.78	2.97	12924	1564	10	0	34	0	0	logfile
✔	8P70	17513	2024-09-23	2023-05-30	2.0	1.98	2.01	2.0	0.006	0.62	0.0	0.04	16.72	0.00	2.202	7.34	0.90	1.3	98.5	0.2	1.67	0.67	0.79	5.37	2.0	0.003	0.60	0.0	0.04	16.59	0.01	2.486	6.56	1.08	1.5	98.4	0.2	1.82	0.19	0.67	0.80	5.01	5282	630	7	0	2	154	0	logfile
✔	8XZi	38797	2024-09-24	2024-01-21	2.7	1.98	—	1.7	0.021	1.72	2.0	0.09	9.40	0.01	1.226	1.67	0.20	2.2	97.6	0.2	1.22	0.73	0.82	4.38	1.6	0.003	0.65	0.0	0.04	14.94	0.00	2.484	6.25	1.73	3.4	96.6	0.0	1.16	1.09	0.75	0.85	3.24	9041	1149	6	0	1	0	0	logfile
✔	7P6B	13224	2024-09-23	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.005	0.69	0.0	0.05	16.94	0.00	2.563	5.89	1.29	4.7	95.3	0.0	-2.34	0.54	0.49	0.88	6.57	4060	540	5	0	0	0	0	logfile
✔	7PBW	13307	2024-09-25	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.005	0.83	0.0	0.04	14.43	0.01	2.204	6.90	0.15	0.0	100.0	0.0	4.47	0.28	0.77	0.90	7.33	9500	873	54	0	81	230	0	logfile
✔	8Q27	18070	2024-09-24	2023-08-01	2.02	1.98	1.92	2.0	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.3	97.7	0.0	-1.63	0.21	0.69	8.02	2.0	0.003	0.57	0.0	0.05	15.75	0.00	2.561	0.86	0.25	3.9	96.1	0.0	-1.48	1.11	0.34	0.88	7.35	7002	453	6	0	0	0	3567	logfile
✔	8Q8C	18250	2024-09-24	2023-08-18	1.92	1.98	1.90	2.0	0.011	1.66	0.0	0.08	10.69	0.01	2.505	0.00	0.27	1.2	98.8	0.0	-1.44	0.21	0.65	7.52	1.9	0.002	0.52	0.0	0.05	15.47	0.00	2.540	0.60	0.54	1.7	98.3	0.0	-0.98	1.22	0.39	0.89	7.72	6618	429	6	0	0	0	3372	logfile
✔	8FPS	29369	2024-09-25	2023-01-05	2.38	1.99	2.31	2.3	0.002	0.37	0.0	0.03	16.27	0.00	2.215	3.41	1.01	1.2	98.8	0.0	4.11	0.61	0.84	3.13	2.3	0.002	0.43	0.0	0.03	16.45	0.00	2.548	3.22	0.55	0.9	99.1	0.0	4.15	0.26	0.61	0.85	3.68	10602	1338	20	0	4	152	0	logfile
✔	6X1A	21994	2024-09-25	2020-05-18	2.5	1.99	2.50	2.6	0.006	0.93	0.0	0.07	15.44	0.00	2.140	14.37	3.79	3.9	96.1	0.0	-3.15	0.51	0.71	2.96	2.6	0.003	0.63	0.0	0.04	16.74	0.00	2.488	8.01	3.51	2.7	97.3	0.0	0.13	0.54	0.53	0.73	2.62	10140	1262	6	0	1	23	0	logfile
✔	8UDL	42150	2024-09-27	2023-09-28	2.37	1.99	2.45	1.7	0.003	0.74	0.0	0.05	15.49	0.01	2.257	2.17	0.39	3.8	96.1	0.1	-0.77	0.66	0.76	3.31	1.7	0.005	0.83	0.0	0.05	19.10	0.01	2.259	6.42	3.29	4.5	95.5	0.0	-0.04	2.69	0.67	0.78	2.46	15245	1783	5	46	0	0	0	logfile
✔	7Z0o	14428	2024-09-26	2022-02-23	2.8	1.99	2.70	1.8	0.004	0.66	0.0	0.04	19.64	0.00	2.189	6.20	1.42	1.7	98.3	0.0	1.08	0.68	0.73	3.27	1.7	0.004	0.58	0.0	0.04	21.11	0.00	2.557	7.49	5.15	1.8	98.2	0.0	1.74	0.81	0.77	0.79	3.37	11864	1256	10	78	0	0	0	logfile
✔	8Q9G	18280	2024-09-24	2023-08-20	2.65	1.99	2.52	2.2	0.011	1.95	0.0	0.09	10.25	0.01	2.554	0.00	0.00	1.6	98.4	0.0	-1.98	0.25	0.66	6.26	2.2	0.004	0.63	0.0	0.05	16.57	0.00	2.484	2.05	1.30	2.1	97.9	0.0	-2.20	1.19	0.34	0.84	6.63	6822	438	6	0	0	0	3480	logfile
✔	8FPG	29363	2024-09-25	2023-01-04	2.32	1.99	2.29	2.2	0.003	0.49	0.0	0.04	16.03	0.00	2.165	4.95	1.84	3.9	96.1	0.0	3.31	0.60	0.83	4.63	2.3	0.002	0.45	0.0	0.04	16.23	0.00	2.605	3.94	2.21	3.5	96.5	0.0	4.48	0.29	0.58	0.83	4.00	10674	1348	20	0	4	187	0	logfile
✔	8iKL	35516	2024-09-24	2023-02-28	2.33	2.00	2.35	1.7	0.004	0.53	0.0	0.04	12.54	0.00	2.191	5.04	0.00	1.6	98.4	0.0	1.25	0.81	0.80	4.16	1.7	0.003	0.54	0.0	0.04	15.24	0.00	2.532	5.40	1.19	2.5	97.5	0.0	1.62	0.34	0.83	0.83	3.53	6942	875	4	0	0	0	0	logfile
✘	8BC3	15961	2024-09-27	2022-10-14	2.1	2.00	2.14	2.2	0.014	1.93	0.0	0.10	18.17	0.02	2.310	1.34	11.95	3.3	96.7	0.0	-4.28	0.71	0.84	5.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16880	2170	30	0	10	500	0	logfile
✔	7YPG	33999	2024-09-23	2022-08-03	2.5	2.00	2.09	3.0	0.008	0.80	0.0	0.06	14.50	0.00	2.331	9.02	0.00	12.3	87.7	0.0	-5.97	0.40	0.82	3.85	3.0	0.004	0.66	0.0	0.05	17.43	0.00	2.641	8.29	5.77	8.2	91.8	0.0	-5.34	0.98	0.41	0.82	3.15	2676	354	6	0	0	0	0	logfile

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