Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FHK	29087	2024-09-28	2022-12-14	2.9	2.20	—	1.7	0.008	1.17	1.0	0.06	18.88	0.02	2.200	7.55	0.39	7.0	93.0	0.0	-1.60	0.73	0.68	1.79	1.7	0.003	0.63	0.0	0.04	18.05	0.01	1.801	10.59	1.64	7.9	92.1	0.0	-0.70	1.31	0.75	0.73	1.87	19947	1219	4	0	20	0	9827	logfile
✔	8JRN	36599	2024-09-26	2023-06-17	2.6	2.12	2.69	1.7	0.004	0.51	0.0	0.04	17.31	0.00	1.840	9.52	0.26	1.7	98.3	0.0	0.37	0.80	0.80	2.85	1.7	0.003	0.57	0.0	0.04	18.06	0.00	2.489	6.83	2.09	1.6	98.4	0.0	1.27	0.50	0.80	0.81	2.95	13672	1660	6	0	4	0	0	logfile
✔	8V54	42979	2024-09-27	2023-11-30	4.1	2.60	3.83	1.7	0.003	0.48	0.0	0.04	13.24	0.00	2.178	9.69	0.81	4.4	95.6	0.0	0.98	0.75	0.74	—	1.9	0.003	0.61	0.0	0.04	14.47	0.00	2.504	8.23	0.13	3.4	96.6	0.0	1.16	1.09	0.73	0.72	—	15728	1787	5	46	0	0	0	logfile
✔	8T4S	41039	2024-09-29	2023-06-09	2.6	2.55	—	1.7	0.005	0.70	0.0	0.05	23.99	0.01	1.654	12.19	3.03	4.5	95.1	0.4	-0.03	0.89	0.87	3.39	1.6	0.007	0.72	1.0	0.05	23.44	0.01	1.792	7.26	2.89	4.4	95.3	0.3	0.11	1.11	0.89	0.87	3.30	74894	4895	42	1671	100	4	0	logfile
✔	7P13	13154	2024-09-26	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	2.1	0.002	0.44	0.0	0.03	17.09	0.00	2.472	15.03	1.44	2.3	97.7	0.0	5.41	0.51	0.83	0.87	3.25	13727	1743	7	0	0	0	154	logfile
✔	7S8L	24896	2024-09-24	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.45	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	2.0	0.003	0.62	0.0	0.04	15.41	0.00	2.389	2.13	1.94	3.2	96.8	0.0	1.28	0.33	0.84	0.84	3.82	8177	1096	6	0	0	0	0	logfile
✔	8UHF	42279	2024-09-26	2023-10-09	3.8	3.77	—	1.7	0.002	0.49	0.0	0.04	12.21	0.00	2.126	10.07	0.00	3.0	97.0	0.0	-1.49	0.62	0.79	0.57	1.7	0.005	0.91	0.0	0.04	16.07	0.00	2.321	20.10	2.30	4.7	95.3	0.0	-0.33	1.24	0.63	0.81	0.65	12411	1739	9	0	0	0	0	logfile
✔	8SZF	40914	2024-09-26	2023-05-29	2.8	2.08	—	1.7	0.005	0.70	1.0	0.05	13.19	0.01	2.268	4.64	0.00	3.1	96.9	0.0	0.03	0.79	0.83	3.52	1.7	0.002	0.52	0.0	0.04	15.00	0.00	2.311	2.93	0.96	2.8	97.2	0.0	0.70	0.34	0.79	0.83	2.60	12813	1602	9	0	20	0	0	logfile
✔	8D33	27154	2024-09-27	2022-05-31	2.46	2.01	2.48	1.7	0.003	0.55	0.0	0.04	13.19	0.00	2.091	4.01	0.39	3.5	96.5	0.1	0.90	0.73	0.78	3.10	1.6	0.003	0.64	0.0	0.04	18.15	0.00	2.312	6.35	3.04	3.2	96.8	0.0	1.11	1.33	0.73	0.79	2.84	15272	1784	6	46	2	0	0	logfile
✔	8YZK	39696	2024-09-24	2024-04-07	3.4	2.39	3.43	1.7	0.003	0.76	0.0	0.04	18.28	0.01	2.181	13.45	1.07	8.9	91.1	0.0	-1.21	0.68	0.59	0.53	1.7	0.003	0.72	0.0	0.04	18.37	0.00	2.465	14.16	5.36	7.6	92.3	0.1	-0.85	0.34	0.69	0.62	0.30	6470	866	4	0	0	0	0	logfile
✘	8QMA	18496	2024-09-24	2023-09-21	3.5	2.52	—	1.8	0.004	0.69	0.0	0.05	13.65	0.01	1.997	5.82	0.74	4.0	95.7	0.2	-1.28	0.80	0.74	3.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52064	6421	23	0	4	0	0	logfile
✔	8XSF	38618	2024-09-27	2024-01-09	2.16	2.17	2.18	1.8	0.003	0.59	0.0	0.04	12.92	0.01	2.140	6.66	0.19	3.5	96.4	0.1	0.99	0.73	0.69	2.89	1.9	0.004	0.69	1.0	0.05	15.91	0.01	2.010	6.40	2.54	3.3	96.6	0.1	0.51	1.09	0.79	0.77	2.79	9736	1221	6	0	5	0	0	logfile
✔	8D37	27155	2024-09-27	2022-05-31	2.65	2.08	2.72	1.8	0.003	0.52	0.0	0.04	12.72	0.00	1.962	4.63	0.32	3.7	96.3	0.0	0.95	0.66	0.73	1.85	1.7	0.005	0.89	1.0	0.04	18.30	0.01	2.075	11.37	4.13	3.9	96.1	0.0	0.54	0.73	0.67	0.74	1.51	15314	1784	6	48	2	0	0	logfile
✔	8WMH	37652	2024-09-26	2023-10-03	2.6	2.23	2.67	1.8	0.003	0.54	0.0	0.04	19.42	0.00	2.196	9.02	0.36	4.1	95.9	0.0	-0.02	0.60	0.62	2.31	1.8	0.004	0.59	0.0	0.04	20.27	0.00	2.512	7.27	1.81	4.5	95.5	0.0	-0.18	0.66	0.73	0.74	2.32	12942	1198	4	141	0	0	0	logfile
✔	8iEW	35374	2024-09-23	2023-02-16	3.1	2.10	3.14	1.8	0.005	0.67	0.0	0.04	22.79	0.01	2.156	9.70	0.47	9.3	90.7	0.0	-0.52	0.75	0.76	2.99	1.9	0.003	0.60	0.0	0.04	22.54	0.01	2.506	6.43	4.49	9.3	90.7	0.0	0.47	0.72	0.76	0.78	2.57	5321	498	4	65	0	0	0	logfile
✔	8Q7H	18216	2024-09-28	2023-08-16	4.1	2.84	3.79	1.8	0.004	0.60	0.0	0.04	12.55	0.00	1.333	6.39	0.00	0.8	99.2	0.0	0.60	0.71	0.76	—	2.0	0.003	0.58	0.0	0.04	12.12	0.00	1.922	4.49	0.00	3.6	96.4	0.0	2.47	0.37	0.71	0.76	—	18033	2788	9	0	135	0	0	logfile
✔	7A5V	11657	2024-09-29	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.59	0.0	0.09	14.87	0.02	0.000	2.35	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	1.8	0.003	0.63	0.0	0.05	13.97	0.00	0.000	4.30	0.52	0.5	99.5	0.0	1.92	0.34	0.71	0.86	6.10	21155	2275	30	0	85	1015	0	logfile
✔	8GB3	29912	2024-09-23	2023-02-24	3.7	2.58	—	1.8	0.003	0.52	0.0	0.04	12.39	0.00	2.202	15.48	4.31	6.9	93.1	0.0	-0.39	0.66	0.61	0.82	1.7	0.004	0.70	0.0	0.04	14.85	0.00	2.495	16.11	4.66	7.5	92.5	0.0	-0.56	0.47	0.67	0.61	0.90	5537	735	3	0	0	0	0	logfile
✔	8P79	17522	2024-09-23	2023-05-30	1.7	1.76	1.73	1.8	0.014	1.73	0.0	0.08	14.30	0.01	2.251	3.34	0.90	2.1	97.7	0.2	-1.48	0.63	0.75	6.80	1.8	0.003	0.62	0.0	0.04	15.87	0.00	2.581	4.72	0.36	1.3	98.5	0.2	1.92	1.15	0.68	0.77	6.37	5256	630	6	0	1	180	0	logfile
✘	9AVG	43901	2024-09-27	2024-03-02	3.6	2.11	—	1.8	0.005	0.69	0.0	0.04	12.94	0.01	2.112	8.93	0.00	3.2	96.8	0.0	-0.83	0.76	0.75	2.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17498	2210	13	0	25	0	0	logfile

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