Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VYF	43659	2024-09-23	2024-02-08	3.2	3.37	3.23	3.4	0.010	1.27	0.0	0.08	11.20	0.00	2.519	0.21	0.00	3.1	96.9	0.0	1.25	0.68	0.81	4.82	3.4	0.006	0.67	0.0	0.05	12.54	0.00	2.537	2.75	2.59	3.1	96.9	0.0	0.56	0.53	0.68	0.88	5.21	5132	715	9	0	12	0	0	logfile
✔	8oWK	17239	2024-09-23	2023-04-28	3.86	3.20	3.47	4.0	0.013	3.09	0.0	0.12	7.40	0.01	2.508	14.24	3.23	0.0	100.0	0.0	0.74	0.46	0.67	5.30	4.0	0.006	0.85	0.0	0.05	14.40	0.00	2.462	17.09	0.97	6.3	93.7	0.0	-3.39	1.71	0.49	0.74	6.86	3050	400	10	0	0	0	0	logfile
✔	8UC3	42114	2024-09-23	2023-09-25	2.78	3.15	2.78	3.1	0.005	0.85	0.0	0.05	16.43	0.01	2.115	12.15	1.78	4.0	96.0	0.0	0.37	0.52	0.72	1.94	3.1	0.003	0.63	0.0	0.04	16.98	0.01	2.621	6.25	2.67	2.2	97.8	0.0	1.59	1.03	0.51	0.74	1.60	4304	556	6	0	2	0	0	logfile
✔	8QCS	18334	2024-09-23	2023-08-28	2.9	3.25	2.95	3.2	0.003	0.57	0.0	0.04	15.23	0.00	2.301	7.00	0.00	2.7	97.3	0.0	0.62	0.56	0.82	3.12	3.2	0.003	0.61	0.0	0.04	16.36	0.00	2.544	7.15	2.55	2.9	97.1	0.0	2.41	1.20	0.53	0.79	2.15	3241	417	1	0	0	0	0	logfile
✔	8JTW	36654	2024-09-23	2023-06-22	3.23	3.56	3.23	3.6	0.002	0.56	0.0	0.04	13.05	0.00	2.309	2.70	0.00	4.3	95.7	0.0	0.14	0.57	0.76	1.88	3.6	0.003	0.57	0.0	0.04	14.65	0.00	2.589	3.17	0.91	5.4	94.6	0.0	0.60	0.29	0.55	0.77	1.57	4282	566	2	0	0	0	0	logfile
✔	8J77	36030	2024-09-23	2023-04-27	3.7	3.92	3.74	4.0	0.006	1.03	0.0	0.06	15.39	0.01	2.149	13.42	0.27	8.6	91.4	0.0	-0.89	0.59	0.78	2.99	4.0	0.003	0.67	0.0	0.04	15.32	0.00	2.578	7.57	2.65	6.8	93.2	0.0	0.61	0.51	0.55	0.76	2.20	3778	493	3	0	4	0	0	logfile
✔	8J6F	36003	2024-09-23	2023-04-25	3.3	3.50	3.25	3.5	0.009	1.06	0.0	0.06	14.30	0.01	2.208	7.88	0.00	9.8	90.2	0.0	-3.18	0.64	0.73	2.32	3.5	0.004	0.73	0.0	0.04	15.98	0.01	2.563	13.00	3.19	9.2	90.8	0.0	-2.25	0.40	0.64	0.76	2.55	3870	496	5	0	1	0	0	logfile
✔	8V4N	42974	2024-09-23	2023-11-29	2.43	2.63	2.50	2.6	0.002	0.49	0.0	0.04	14.21	0.00	2.260	4.14	0.93	2.3	97.7	0.0	0.80	0.31	0.85	3.24	2.6	0.003	0.58	0.0	0.04	17.37	0.00	2.658	1.71	1.87	2.3	97.7	0.0	0.71	1.01	0.31	0.87	3.49	2067	263	1	0	0	0	0	logfile
✔	8oQi	17111	2024-09-23	2023-04-12	3.1	3.09	2.34	3.3	0.013	2.01	0.0	0.11	18.29	0.01	2.465	9.18	2.63	0.0	100.0	0.0	0.22	0.51	0.84	3.31	3.3	0.003	0.58	0.0	0.05	17.02	0.00	2.641	3.75	4.21	2.2	97.8	0.0	-1.72	1.22	0.52	0.87	4.11	3810	560	10	0	0	0	0	logfile
✔	8oVM	17223	2024-09-23	2023-04-26	3.24	3.35	1.89	3.4	0.007	0.99	0.0	0.09	11.00	0.00	2.447	9.68	0.00	2.9	97.1	0.0	-3.60	0.43	0.78	4.59	3.4	0.003	0.75	0.0	0.05	14.25	0.00	2.611	7.82	5.71	6.5	93.5	0.0	-3.33	1.51	0.45	0.80	3.88	1360	180	5	0	0	0	0	logfile
✔	8ZWJ	60529	2024-09-23	2024-06-13	3.1	2.80	2.17	3.2	0.006	0.74	0.0	0.05	15.84	0.00	2.218	14.51	0.00	10.1	89.9	0.0	-4.10	0.44	0.86	4.88	3.2	0.003	0.52	0.0	0.05	15.38	0.00	2.601	3.22	2.59	8.2	91.8	0.0	-2.28	1.29	0.42	0.86	4.51	2760	378	8	6	0	0	0	logfile
✔	8iEi	35382	2024-09-23	2023-02-15	2.62	2.17	2.60	2.0	0.007	0.80	0.0	0.04	14.11	0.01	2.227	2.71	0.00	3.8	96.2	0.0	3.06	0.74	0.78	2.44	2.0	0.003	0.55	0.0	0.04	15.73	0.01	2.530	5.21	1.01	3.1	96.9	0.0	4.11	1.04	0.78	0.82	2.96	4469	563	4	0	2	0	0	logfile
✔	8J76	36029	2024-09-23	2023-04-27	3.7	3.88	3.80	3.9	0.007	1.24	4.0	0.09	15.61	0.00	1.926	14.52	0.27	7.0	93.0	0.0	-1.36	0.50	0.72	1.35	4.0	0.003	0.75	0.0	0.04	16.05	0.00	2.535	10.93	3.45	5.1	94.9	0.0	0.43	0.55	0.49	0.72	1.47	3771	493	2	0	3	0	0	logfile
✔	8WQi	37746	2024-09-23	2023-10-11	3.5	3.71	3.53	3.7	0.003	0.62	0.0	0.04	14.51	0.00	2.188	9.29	0.00	10.2	89.8	0.0	-1.75	0.63	0.82	1.38	3.7	0.003	0.66	0.0	0.04	16.79	0.00	2.443	11.56	1.46	8.9	91.1	0.0	-0.36	0.53	0.65	0.80	0.91	5074	644	2	0	0	0	0	logfile
✔	8X8Q	38156	2024-09-23	2023-11-28	3.14	3.86	3.14	3.6	0.004	0.83	0.0	0.05	14.72	0.00	2.223	21.86	0.57	1.5	98.5	0.0	0.16	0.84	0.87	3.78	3.6	0.002	0.55	0.0	0.04	15.47	0.00	2.622	6.77	0.76	1.1	98.9	0.0	0.63	0.35	0.83	0.86	3.31	4949	622	3	0	1	0	0	logfile
✔	8GBR	29920	2024-09-23	2023-02-28	3.4	3.85	1.72	3.9	0.004	0.59	0.0	0.05	13.84	0.01	2.120	3.17	0.00	1.1	98.9	0.0	-2.35	0.56	0.83	4.22	4.0	0.005	0.78	0.0	0.05	14.29	0.00	2.537	6.34	4.30	7.9	92.1	0.0	-2.79	2.32	0.49	0.78	4.18	3630	465	5	0	0	0	0	logfile
✔	9FoF	50621	2024-09-23	2024-06-11	2.9	2.55	2.80	3.2	0.011	1.53	6.0	0.08	13.93	0.01	2.332	9.79	1.56	4.2	94.8	1.0	-4.04	0.27	0.57	3.42	2.8	0.006	1.03	0.0	0.05	17.52	0.00	2.580	2.89	2.60	7.6	92.4	0.0	-4.73	1.98	0.51	0.90	5.61	4176	600	12	0	0	0	0	logfile
✔	8AN1	15529	2024-09-23	2022-08-04	3.93	4.18	3.94	4.0	0.002	0.47	0.0	0.04	11.04	0.00	2.168	6.31	3.10	3.4	96.5	0.1	1.42	0.83	0.81	1.35	4.0	0.003	0.65	0.0	0.04	14.12	0.00	2.100	6.18	2.73	4.2	95.7	0.1	0.92	1.17	0.83	0.80	1.21	47790	6255	18	0	0	0	0	logfile
✔	8KGi	37222	2024-09-23	2023-08-19	3.2	3.65	3.28	3.6	0.003	0.67	0.0	0.04	13.82	0.00	2.303	10.16	0.00	2.1	97.9	0.0	2.76	0.52	0.73	2.71	3.6	0.004	0.74	0.0	0.05	15.76	0.00	2.478	12.33	1.88	3.3	96.7	0.0	2.94	0.43	0.52	0.75	2.31	5766	782	2	0	0	0	0	logfile
✔	8RRR	19462	2024-09-23	2024-01-23	3.4	3.47	2.39	3.7	0.006	0.83	0.0	0.05	15.10	0.00	2.315	9.82	0.64	9.4	90.6	0.0	-4.20	0.43	0.79	5.28	3.7	0.006	0.80	0.0	0.06	15.66	0.00	2.531	8.72	4.04	9.6	90.4	0.0	-4.36	1.53	0.41	0.78	4.92	4925	735	10	0	0	0	0	logfile

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