Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HRA	34965	2024-09-23	2022-12-15	3.76	3.86	3.86	3.8	0.003	0.50	0.0	0.04	15.37	0.00	2.207	6.03	0.02	4.4	95.6	0.0	-0.18	0.77	0.85	1.80	3.8	0.003	0.53	0.0	0.04	16.67	0.00	2.214	5.39	1.27	3.7	96.2	0.1	0.94	1.13	0.76	0.84	1.38	48146	5885	14	51	4	0	0	logfile
✔	7XiZ	33213	2024-09-23	2022-04-14	3.74	3.27	3.81	3.1	0.013	1.11	0.0	0.06	19.02	0.01	2.386	4.94	0.00	12.8	86.4	0.8	-3.37	0.35	0.71	1.78	3.1	0.005	0.90	0.0	0.05	18.79	0.01	2.502	12.70	8.09	17.4	81.9	0.8	-3.76	1.54	0.37	0.74	1.74	2161	267	2	0	2	0	0	logfile
✔	7ST9	25422	2024-09-23	2021-11-12	2.2	2.95	—	2.8	0.002	0.46	0.0	0.04	17.02	0.00	1.796	2.94	0.71	1.5	98.5	0.0	2.56	0.82	0.78	3.47	2.8	0.009	0.63	0.0	0.04	17.63	0.00	1.724	2.27	0.71	1.5	98.5	0.0	2.20	2.70	0.82	0.86	3.61	46553	2802	26	36	9	423	22930	logfile
✔	6U8Y	20692	2024-09-23	2019-09-06	4.0	4.11	—	4.0	0.008	1.21	1.0	0.06	15.79	0.01	2.209	8.36	2.01	12.1	87.5	0.3	-5.88	0.74	0.78	—	4.0	0.004	0.86	0.0	0.05	16.91	0.01	2.372	17.12	4.27	10.6	89.4	0.0	-2.17	0.69	0.74	0.78	—	48364	6140	30	0	6	0	0	logfile
✘	7F62	31470	2024-09-23	2021-06-24	3.6	4.33	—	4.1	0.003	0.65	0.0	0.04	13.21	0.00	1.925	19.73	1.38	8.1	91.6	0.2	-2.76	0.66	0.62	0.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3321	427	3	0	0	0	0	logfile
✔	7XQD	33393	2024-09-23	2022-05-07	2.7	3.09	2.64	2.9	0.006	1.17	0.0	0.04	17.82	0.00	2.067	3.24	0.56	2.0	98.0	0.0	3.53	0.63	0.87	4.27	2.9	0.002	0.54	0.0	0.03	14.97	0.00	2.401	6.18	1.57	2.5	97.5	0.0	3.44	1.16	0.64	0.88	4.00	42980	2412	36	0	156	272	19968	logfile
✔	7TB3	25791	2024-09-23	2021-12-21	2.57	3.30	—	3.1	0.002	0.41	0.0	0.03	9.42	0.00	2.212	4.32	1.06	9.5	90.1	0.4	0.76	0.74	0.74	1.78	3.0	0.003	0.66	0.0	0.04	15.00	0.00	2.364	6.37	1.65	2.7	97.3	0.0	3.01	0.96	0.74	0.85	2.08	48000	5832	24	0	0	0	0	logfile
✔	8FF3	29037	2024-09-23	2022-12-07	3.09	2.31	2.69	3.2	0.002	0.43	0.0	0.06	8.70	0.00	2.616	1.83	0.00	0.0	100.0	0.0	-2.15	0.40	0.67	4.94	3.2	0.002	0.51	0.0	0.06	11.60	0.00	2.568	4.58	0.00	0.7	99.3	0.0	-2.04	0.53	0.35	0.72	3.73	2190	150	6	0	0	0	1122	logfile
✔	7V0M	26944	2024-09-23	2022-05-10	2.7	2.46	2.64	2.5	0.003	0.56	0.0	0.04	18.10	0.00	2.240	3.55	1.29	3.3	96.7	0.0	0.52	0.56	0.89	4.90	2.5	0.002	0.47	0.0	0.04	18.13	0.00	2.636	4.51	1.81	3.8	96.2	0.0	2.08	0.48	0.55	0.88	4.37	3724	483	4	0	0	60	0	logfile
✔	7WoP	32654	2024-09-23	2022-01-22	3.51	2.51	—	3.4	0.002	0.54	0.0	0.04	10.83	0.00	2.203	10.97	9.21	11.4	88.6	0.0	-4.81	0.64	0.66	1.96	3.4	0.004	0.80	0.0	0.05	15.16	0.01	2.431	16.01	6.86	16.8	83.2	0.0	-3.71	1.29	0.64	0.68	2.15	5107	669	3	0	0	0	0	logfile
✔	8CGG	16642	2024-09-23	2023-02-04	2.5	2.67	2.48	2.7	0.011	1.67	0.0	0.08	16.62	0.01	2.637	6.41	0.00	11.5	88.5	0.0	-5.62	0.55	0.94	8.29	2.7	0.002	0.67	0.0	0.04	16.97	0.00	2.666	1.75	0.00	3.1	96.9	0.0	-4.74	0.95	0.51	0.91	7.42	2710	400	5	0	0	0	0	logfile
✔	7D4G	30573	2024-09-23	2020-09-23	3.9	4.13	—	4.1	0.006	1.06	1.0	0.06	9.87	0.01	1.917	36.47	0.00	10.7	88.9	0.4	-3.84	0.56	0.52	1.34	4.1	0.004	0.88	0.0	0.05	15.67	0.01	2.554	16.61	5.32	12.6	87.2	0.2	-2.01	3.65	0.66	0.71	1.53	3925	502	3	0	0	0	0	logfile
✔	7Y1B	33559	2024-09-23	2022-06-08	3.23	3.55	3.34	3.5	0.006	0.64	0.0	0.05	14.26	0.01	2.340	4.92	0.00	9.8	90.2	0.0	-1.42	0.74	0.84	3.37	3.4	0.003	0.61	0.0	0.04	15.89	0.01	2.543	3.07	1.27	5.4	94.6	0.0	-0.13	0.90	0.71	0.85	3.27	4137	541	3	0	0	0	0	logfile
✔	7XU3	33457	2024-09-23	2022-05-18	3.0	3.49	2.94	3.3	0.009	0.88	0.0	0.05	13.99	0.01	1.978	3.82	0.34	3.9	96.1	0.0	-1.43	0.82	0.82	2.61	3.2	0.003	0.57	0.0	0.04	14.23	0.00	2.347	4.55	0.46	3.8	96.2	0.0	-0.35	1.13	0.83	0.83	2.25	47057	3006	15	0	48	0	22838	logfile
✔	6XAS	22114	2024-09-23	2020-06-04	3.8	3.01	3.14	2.9	0.002	0.49	0.0	0.04	11.33	0.00	1.961	4.92	1.49	2.2	97.8	0.0	-2.00	0.62	0.55	1.72	3.0	0.003	0.63	0.0	0.04	15.07	0.00	1.910	6.85	1.67	3.7	96.3	0.0	-0.02	0.76	0.61	0.53	1.54	46887	5804	16	73	3	0	0	logfile
✔	7F63	31471	2024-09-23	2021-06-24	3.9	4.20	—	4.0	0.002	0.58	0.0	0.04	13.34	0.00	2.136	12.60	0.00	8.3	91.4	0.2	-2.31	0.63	0.62	1.27	4.0	0.004	0.86	0.0	0.05	16.24	0.00	2.372	15.79	2.96	12.4	87.2	0.5	-3.10	1.52	0.65	0.71	1.41	3375	429	3	0	0	0	0	logfile
✔	7XQF	33394	2024-09-23	2022-05-07	2.3	2.69	2.25	2.6	0.005	1.09	0.0	0.04	17.01	0.00	1.942	3.87	0.56	1.6	98.4	0.0	3.06	0.68	0.87	4.51	2.6	0.002	0.52	0.0	0.03	14.77	0.00	2.474	3.45	1.16	2.2	97.8	0.0	3.15	1.04	0.65	0.87	4.41	43140	2412	36	0	168	492	19968	logfile
✔	7V0Q	26948	2024-09-23	2022-05-10	2.5	2.22	2.45	2.2	0.004	0.61	0.0	0.04	18.36	0.00	2.227	3.48	2.15	1.1	98.9	0.0	1.64	0.60	0.89	5.35	2.2	0.003	0.52	0.0	0.04	18.63	0.00	2.627	3.38	3.22	1.2	98.8	0.0	1.92	0.25	0.59	0.88	5.59	5301	658	2	0	0	127	0	logfile
✘	6RJU	4906	2024-09-23	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1992	131	1	0	0	0	997	logfile
✔	5M6S	3451	2024-09-23	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.4	0.003	0.63	0.0	0.03	17.89	0.00	2.491	5.65	0.00	6.2	93.8	0.0	2.23	2.29	0.02	0.07	—	1593	98	1	0	0	0	793	logfile

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