Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K9i	22749	2024-09-23	2020-09-29	3.3	3.72	3.48	3.6	0.005	0.72	0.0	0.05	12.86	0.00	2.118	12.07	0.00	3.6	96.4	0.0	-0.86	0.55	0.82	3.38	3.6	0.003	0.72	0.0	0.04	14.95	0.00	2.545	8.20	3.38	3.6	96.4	0.0	-0.92	1.61	0.54	0.83	2.54	3295	423	4	0	1	0	0	logfile
✔	7XU3	33457	2024-09-23	2022-05-18	3.0	3.49	2.94	3.3	0.009	0.88	0.0	0.05	13.99	0.01	1.978	3.82	0.34	3.9	96.1	0.0	-1.43	0.82	0.82	2.61	3.2	0.003	0.57	0.0	0.04	14.23	0.00	2.347	4.55	0.46	3.8	96.2	0.0	-0.35	1.13	0.83	0.83	2.25	47057	3006	15	0	48	0	22838	logfile
✔	8E27	27827	2024-09-23	2022-08-14	3.4	3.73	3.56	3.7	0.010	1.10	0.0	0.07	14.24	0.01	2.297	2.69	0.34	1.2	98.8	0.0	-0.92	0.71	0.84	2.46	3.7	0.003	0.58	0.0	0.04	16.23	0.00	2.583	3.71	1.69	2.5	97.5	0.0	0.45	0.53	0.69	0.84	2.44	5371	676	1	0	0	0	0	logfile
✔	7XQD	33393	2024-09-23	2022-05-07	2.7	3.09	2.64	2.9	0.006	1.17	0.0	0.04	17.82	0.00	2.067	3.24	0.56	2.0	98.0	0.0	3.53	0.63	0.87	4.27	2.9	0.002	0.54	0.0	0.03	14.97	0.00	2.401	6.18	1.57	2.5	97.5	0.0	3.44	1.16	0.64	0.88	4.00	42980	2412	36	0	156	272	19968	logfile
✔	6PZT	20537	2024-09-23	2019-08-01	3.46	3.91	3.76	3.8	0.007	0.75	0.0	0.05	11.59	0.00	2.026	16.50	0.43	12.3	87.7	0.0	-3.13	0.59	0.76	3.32	3.8	0.003	0.70	0.0	0.04	13.41	0.00	2.524	7.54	5.15	8.3	91.7	0.0	0.35	1.19	0.63	0.80	1.98	6062	932	2	0	0	0	0	logfile
✔	6XAS	22114	2024-09-23	2020-06-04	3.8	3.01	3.14	2.9	0.002	0.49	0.0	0.04	11.33	0.00	1.961	4.92	1.49	2.2	97.8	0.0	-2.00	0.62	0.55	1.72	3.0	0.003	0.63	0.0	0.04	15.07	0.00	1.910	6.85	1.67	3.7	96.3	0.0	-0.02	0.76	0.61	0.53	1.54	46887	5804	16	73	3	0	0	logfile
✔	8DKi	27489	2024-09-23	2022-07-05	3.32	3.57	3.29	3.6	0.003	0.64	0.0	0.05	13.79	0.00	2.204	9.78	0.21	4.6	95.4	0.0	-0.62	0.62	0.84	2.61	3.6	0.006	0.69	0.0	0.05	15.91	0.00	2.599	10.01	2.90	7.3	92.7	0.0	-0.52	0.33	0.61	0.87	2.85	4365	552	3	0	0	0	0	logfile
✔	7QTK	14143	2024-09-23	2022-01-14	3.84	4.13	—	4.0	0.004	0.73	1.0	0.05	13.16	0.00	2.182	9.44	0.54	4.9	95.0	0.2	-0.03	0.61	0.79	1.74	4.0	0.003	0.72	0.0	0.05	14.71	0.00	2.505	8.22	1.62	4.4	95.4	0.2	-0.47	0.56	0.62	0.79	1.84	5009	643	4	0	2	0	0	logfile
✘	6RJU	4906	2024-09-23	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1992	131	1	0	0	0	997	logfile
✔	6W7M	21571	2024-09-23	2020-03-19	3.8	3.72	—	3.6	0.002	0.58	0.0	0.03	23.74	0.00	2.031	14.77	0.10	7.4	92.3	0.3	-3.67	0.68	0.56	0.12	3.6	0.004	0.79	0.0	0.04	24.19	0.01	2.030	19.50	3.70	11.1	88.7	0.2	-2.68	1.34	0.71	0.61	0.50	50694	2319	20	1512	0	0	0	logfile
✔	7DCP	30638	2024-09-23	2020-10-26	3.15	2.93	—	2.9	0.005	0.92	0.0	0.05	11.27	0.01	2.092	3.96	0.61	2.9	97.1	0.0	-2.88	0.70	0.82	3.52	2.9	0.002	0.60	0.0	0.04	15.61	0.00	2.105	4.47	1.83	4.0	96.0	0.0	1.33	0.94	0.72	0.86	2.78	5868	732	3	0	2	0	0	logfile
✔	6RiU	4898	2024-09-23	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.002	0.65	0.0	0.03	16.40	0.00	2.434	10.05	1.97	5.6	94.4	0.0	-1.03	1.42	0.61	0.75	1.30	2882	182	2	0	0	0	1430	logfile
✔	7PQG	13593	2024-09-23	2021-09-21	3.7	4.20	—	4.0	0.004	0.88	0.0	0.05	12.56	0.01	2.204	28.36	0.28	7.4	92.6	0.0	-0.87	0.56	0.76	0.82	4.0	0.004	1.09	0.0	0.06	15.88	0.01	2.463	28.06	2.52	6.4	93.6	0.0	-1.24	1.21	0.56	0.77	0.82	3251	423	2	0	0	0	0	logfile
✔	3JBS	6478	2024-09-23	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.003	0.64	0.0	0.04	18.35	0.00	2.655	5.51	3.95	1.7	98.3	0.0	0.93	1.82	0.21	0.81	3.78	1401	175	1	0	0	0	0	logfile
✔	8DKE	27488	2024-09-23	2022-07-05	3.18	3.43	3.12	3.4	0.003	0.74	2.0	0.05	14.40	0.01	2.179	7.36	0.83	6.2	93.8	0.0	-0.95	0.57	0.85	3.68	3.4	0.003	0.56	0.0	0.04	15.64	0.00	2.592	4.48	2.07	6.6	93.4	0.0	0.27	0.28	0.56	0.85	3.37	4369	553	3	0	0	0	0	logfile
✔	7T32	25648	2024-09-23	2021-12-06	3.4	3.96	—	3.9	0.006	0.77	0.0	0.04	14.07	0.01	2.313	6.67	0.00	5.1	94.6	0.3	1.86	0.44	0.76	0.75	3.9	0.003	0.70	0.0	0.04	16.07	0.00	2.509	8.27	3.17	3.8	96.0	0.3	2.46	1.25	0.44	0.79	0.65	2861	375	2	0	1	0	0	logfile
✔	8CSV	26972	2024-09-23	2022-05-13	2.7	2.53	2.72	2.6	0.002	0.47	0.0	0.04	11.85	0.00	2.246	2.73	1.03	2.7	97.1	0.2	0.82	0.53	0.85	5.33	2.6	0.002	0.48	0.0	0.04	15.88	0.00	2.546	4.37	2.33	3.3	96.5	0.2	2.38	0.57	0.56	0.87	4.60	3712	483	3	0	0	48	0	logfile
✔	7F63	31471	2024-09-23	2021-06-24	3.9	4.20	—	4.0	0.002	0.58	0.0	0.04	13.34	0.00	2.136	12.60	0.00	8.3	91.4	0.2	-2.31	0.63	0.62	1.27	4.0	0.004	0.86	0.0	0.05	16.24	0.00	2.372	15.79	2.96	12.4	87.2	0.5	-3.10	1.52	0.65	0.71	1.41	3375	429	3	0	0	0	0	logfile
✘	7F62	31470	2024-09-23	2021-06-24	3.6	4.33	—	4.1	0.003	0.65	0.0	0.04	13.21	0.00	1.925	19.73	1.38	8.1	91.6	0.2	-2.76	0.66	0.62	0.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3321	427	3	0	0	0	0	logfile
✔	7UL5	26592	2024-09-23	2022-04-03	3.1	3.32	3.08	3.3	0.004	0.64	0.0	0.04	11.76	0.01	2.404	3.68	0.00	3.1	96.9	0.0	-1.07	0.64	0.85	3.67	3.3	0.003	0.52	0.0	0.04	13.34	0.00	2.628	1.47	1.49	1.4	98.6	0.0	2.74	0.29	0.66	0.87	3.19	2773	371	2	0	0	0	0	logfile

• ← previous
• Page 2 of 538
• next →