Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PQG	13593	2024-09-23	2021-09-21	3.7	4.20	—	4.0	0.004	0.88	0.0	0.05	12.56	0.01	2.204	28.36	0.28	7.4	92.6	0.0	-0.87	0.56	0.76	0.82	4.0	0.004	1.09	0.0	0.06	15.88	0.01	2.463	28.06	2.52	6.4	93.6	0.0	-1.24	1.21	0.56	0.77	0.82	3251	423	2	0	0	0	0	logfile
✔	8DKE	27488	2024-09-23	2022-07-05	3.18	3.43	3.12	3.4	0.003	0.74	2.0	0.05	14.40	0.01	2.179	7.36	0.83	6.2	93.8	0.0	-0.95	0.57	0.85	3.68	3.4	0.003	0.56	0.0	0.04	15.64	0.00	2.592	4.48	2.07	6.6	93.4	0.0	0.27	0.28	0.56	0.85	3.37	4369	553	3	0	0	0	0	logfile
✔	8DKM	27490	2024-09-23	2022-07-05	3.39	3.59	3.11	3.6	0.003	0.67	0.0	0.04	13.47	0.00	2.241	7.23	0.83	6.4	93.6	0.0	-0.94	0.62	0.84	2.67	3.6	0.003	0.58	0.0	0.04	15.57	0.00	2.604	5.51	3.32	6.2	93.8	0.0	-0.08	0.39	0.61	0.86	2.38	4383	553	4	0	1	0	0	logfile
✔	7V0Q	26948	2024-09-23	2022-05-10	2.5	2.22	2.45	2.2	0.004	0.61	0.0	0.04	18.36	0.00	2.227	3.48	2.15	1.1	98.9	0.0	1.64	0.60	0.89	5.35	2.2	0.003	0.52	0.0	0.04	18.63	0.00	2.627	3.38	3.22	1.2	98.8	0.0	1.92	0.25	0.59	0.88	5.59	5301	658	2	0	0	127	0	logfile
✔	7ST9	25422	2024-09-23	2021-11-12	2.2	2.95	—	2.8	0.002	0.46	0.0	0.04	17.02	0.00	1.796	2.94	0.71	1.5	98.5	0.0	2.56	0.82	0.78	3.47	2.8	0.009	0.63	0.0	0.04	17.63	0.00	1.724	2.27	0.71	1.5	98.5	0.0	2.20	2.70	0.82	0.86	3.61	46553	2802	26	36	9	423	22930	logfile
✔	7V0M	26944	2024-09-23	2022-05-10	2.7	2.46	2.64	2.5	0.003	0.56	0.0	0.04	18.10	0.00	2.240	3.55	1.29	3.3	96.7	0.0	0.52	0.56	0.89	4.90	2.5	0.002	0.47	0.0	0.04	18.13	0.00	2.636	4.51	1.81	3.8	96.2	0.0	2.08	0.48	0.55	0.88	4.37	3724	483	4	0	0	60	0	logfile
✔	8HBV	34644	2024-09-23	2022-10-31	2.51	2.70	2.51	2.7	0.009	0.96	0.0	0.05	15.84	0.01	2.209	8.10	0.00	2.0	98.0	0.0	1.54	0.61	0.88	4.41	2.8	0.003	0.54	0.0	0.04	17.21	0.00	2.452	6.11	2.96	2.7	97.3	0.0	2.91	0.94	0.59	0.88	3.61	3279	414	3	0	3	0	0	logfile
✔	7RSQ	24677	2024-09-23	2021-08-11	3.8	4.03	3.73	4.1	0.008	0.80	0.0	0.05	12.74	0.00	2.360	4.01	2.88	3.0	97.0	0.0	-0.64	0.63	0.68	1.39	4.1	0.003	0.53	0.0	0.03	15.39	0.00	2.533	2.26	0.96	3.0	97.0	0.0	2.06	1.76	0.64	0.71	1.77	3970	246	1	0	0	0	1958	logfile
✔	7DCQ	30639	2024-09-23	2020-10-26	2.9	3.09	—	3.1	0.006	0.95	1.0	0.06	10.61	0.01	2.378	4.64	0.85	4.1	95.9	0.0	-3.49	0.70	0.81	4.02	3.1	0.004	1.09	1.0	0.05	15.83	0.00	2.312	9.10	2.21	3.8	96.2	0.0	0.75	0.64	0.69	0.83	3.27	5197	653	1	0	0	0	0	logfile
✔	6PZT	20537	2024-09-23	2019-08-01	3.46	3.91	3.76	3.8	0.007	0.75	0.0	0.05	11.59	0.00	2.026	16.50	0.43	12.3	87.7	0.0	-3.13	0.59	0.76	3.32	3.8	0.003	0.70	0.0	0.04	13.41	0.00	2.524	7.54	5.15	8.3	91.7	0.0	0.35	1.19	0.63	0.80	1.98	6062	932	2	0	0	0	0	logfile
✔	8DKW	27492	2024-09-23	2022-07-06	3.09	3.64	3.05	3.6	0.006	0.71	1.0	0.06	13.84	0.00	2.097	8.61	0.41	6.2	93.8	0.0	-2.92	0.60	0.83	3.25	3.6	0.004	0.62	0.0	0.04	15.33	0.00	2.619	5.40	2.28	5.1	94.9	0.0	-0.19	0.36	0.55	0.83	2.89	4370	553	3	0	0	0	0	logfile
✔	6W77	21569	2024-09-23	2020-03-18	3.6	3.44	—	3.3	0.002	0.53	0.0	0.03	23.07	0.00	2.084	9.33	0.12	6.1	93.7	0.2	-3.22	0.73	0.67	0.91	3.3	0.007	0.95	0.0	0.05	23.63	0.01	2.066	15.04	4.96	11.8	88.1	0.1	-2.72	2.78	0.77	0.72	0.81	47940	1949	18	1519	0	0	0	logfile
✔	7XiZ	33213	2024-09-23	2022-04-14	3.74	3.27	3.81	3.1	0.013	1.11	0.0	0.06	19.02	0.01	2.386	4.94	0.00	12.8	86.4	0.8	-3.37	0.35	0.71	1.78	3.1	0.005	0.90	0.0	0.05	18.79	0.01	2.502	12.70	8.09	17.4	81.9	0.8	-3.76	1.54	0.37	0.74	1.74	2161	267	2	0	2	0	0	logfile
✔	7SLA	25196	2024-09-23	2021-10-23	3.15	3.74	—	3.7	0.009	1.01	2.0	0.07	13.72	0.01	2.210	3.63	1.74	6.8	93.2	0.0	-4.25	0.59	0.79	1.94	3.6	0.003	0.61	0.0	0.04	14.91	0.00	2.514	2.27	2.60	4.5	95.5	0.0	0.23	0.65	0.54	0.80	2.00	5458	702	3	0	1	0	0	logfile
✔	8GoE	34176	2024-09-23	2022-08-24	3.0	3.01	3.02	3.1	0.008	0.85	1.0	0.05	13.13	0.01	2.273	6.40	0.57	2.0	98.0	0.0	-6.19	0.46	0.82	4.16	3.1	0.003	0.64	1.0	0.04	13.78	0.00	2.600	6.25	0.85	2.5	97.5	0.0	1.55	0.41	0.47	0.84	2.98	3323	407	2	0	1	0	0	logfile
✔	8CSV	26972	2024-09-23	2022-05-13	2.7	2.53	2.72	2.6	0.002	0.47	0.0	0.04	11.85	0.00	2.246	2.73	1.03	2.7	97.1	0.2	0.82	0.53	0.85	5.33	2.6	0.002	0.48	0.0	0.04	15.88	0.00	2.546	4.37	2.33	3.3	96.5	0.2	2.38	0.57	0.56	0.87	4.60	3712	483	3	0	0	48	0	logfile
✔	8EXR	28660	2024-09-23	2022-10-25	3.8	4.08	3.96	4.1	0.026	1.94	0.0	0.11	12.16	0.01	2.016	3.98	0.00	2.8	96.9	0.3	-0.66	0.58	0.68	1.29	4.1	0.003	0.72	0.0	0.04	16.61	0.00	2.088	12.13	3.37	3.4	96.6	0.0	0.69	0.98	0.53	0.67	0.84	5111	590	5	0	7	0	0	logfile
✔	7XQ1	33388	2024-09-23	2022-05-06	3.4	3.32	3.36	3.5	0.010	1.05	1.0	0.06	13.48	0.01	2.320	6.82	0.58	2.8	97.2	0.0	-6.81	0.47	0.78	3.56	3.5	0.003	0.63	0.0	0.04	14.67	0.00	2.580	6.67	1.74	2.0	98.0	0.0	0.76	1.18	0.50	0.81	2.21	3302	400	2	0	2	0	0	logfile
✔	7UL5	26592	2024-09-23	2022-04-03	3.1	3.32	3.08	3.3	0.004	0.64	0.0	0.04	11.76	0.01	2.404	3.68	0.00	3.1	96.9	0.0	-1.07	0.64	0.85	3.67	3.3	0.003	0.52	0.0	0.04	13.34	0.00	2.628	1.47	1.49	1.4	98.6	0.0	2.74	0.29	0.66	0.87	3.19	2773	371	2	0	0	0	0	logfile
✔	8DWi	27755	2024-09-23	2022-08-01	3.4	4.06	3.58	4.1	0.003	0.63	0.0	0.04	13.02	0.01	2.258	7.44	0.00	5.0	95.0	0.0	0.29	0.28	0.33	-0.40	4.0	0.003	0.75	0.0	0.04	16.60	0.01	2.552	10.92	1.91	5.5	94.5	0.0	-0.61	1.64	0.47	0.71	2.20	3192	424	1	0	0	0	0	logfile

• ← previous
• Page 3 of 538
• next →