Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7DZW	30915	2024-09-26	2021-01-26	3.45	4.19	3.55	3.3	0.019	2.27	0.0	0.00	4.81	0.01	2.240	2.28	0.00	5.1	93.3	1.6	-1.27	0.44	0.25	—	3.3	0.004	0.95	0.0	0.00	6.22	0.00	2.310	1.46	0.00	17.8	82.1	0.1	-2.66	2.03	0.77	0.74	—	13452	3363	3	0	0	0	0	logfile
✔	8iQF	35660	2024-09-27	2023-03-16	4.6	4.96	4.72	4.5	0.003	0.63	0.0	0.00	4.93	0.00	1.995	4.78	0.00	4.2	95.8	0.0	-0.27	0.79	0.61	—	4.5	0.004	0.89	0.0	0.00	5.92	0.00	2.332	1.74	0.00	18.1	81.9	0.0	-2.88	3.20	0.82	0.65	—	9072	2268	10	0	0	0	0	logfile
✔	7N95	24250	2024-09-24	2021-06-16	4.1	3.45	—	2.1	0.002	0.74	0.0	0.00	5.05	0.00	2.573	0.10	0.00	7.1	92.3	0.6	-1.14	0.78	0.70	—	2.1	0.004	1.01	0.0	0.00	4.97	0.00	2.503	6.53	0.00	18.1	81.7	0.2	-3.27	1.81	0.85	0.83	—	7299	2433	2	0	0	0	0	logfile
✔	6oLK	20115	2024-09-28	2019-04-16	4.0	4.14	—	4.1	0.005	1.04	0.0	0.06	5.09	0.01	2.445	0.20	0.00	2.3	97.7	0.0	-0.75	0.56	0.49	—	4.1	0.003	0.67	0.0	0.04	4.61	0.00	2.596	2.69	0.00	7.2	92.8	0.0	-0.30	1.33	0.61	0.57	—	10323	2094	6	0	0	0	0	logfile
✔	8FKJ	29250	2024-09-30	2022-12-21	4.2	4.36	4.26	4.0	0.003	0.66	0.0	0.04	5.09	0.00	2.167	6.77	0.00	9.9	89.9	0.1	-0.50	0.66	0.65	—	4.1	0.002	0.55	0.0	0.04	4.28	0.00	2.407	2.87	0.00	9.0	90.9	0.1	-0.16	0.45	0.66	0.67	—	25001	5088	27	0	0	0	0	logfile
✔	8ViB	43256	2024-09-23	2024-01-03	4.6	7.58	4.37	4.4	0.009	1.12	1.0	0.07	5.12	0.00	2.305	5.79	0.00	5.6	93.5	0.9	-0.39	0.40	0.54	—	4.4	0.004	0.79	0.0	0.04	5.91	0.00	2.425	9.23	0.00	11.5	88.1	0.5	-1.43	2.86	0.49	0.83	—	4421	888	6	0	7	0	0	logfile
✔	6SH4	10193	2024-09-26	2019-08-05	4.4	4.48	—	4.3	0.005	1.01	0.0	0.07	5.13	0.00	2.405	2.99	0.00	6.8	92.4	0.8	-2.94	0.72	0.77	—	4.3	0.003	0.70	0.0	0.04	4.38	0.00	2.612	0.37	0.00	7.8	92.2	0.0	0.03	2.27	0.74	0.83	—	12957	2632	7	0	0	0	0	logfile
✔	8DXR	27774	2024-09-25	2022-08-02	4.0	4.31	4.01	4.2	0.004	0.81	0.0	0.04	5.27	0.00	2.255	1.54	0.00	11.6	88.3	0.1	-0.80	0.67	0.71	—	4.2	0.002	0.48	0.0	0.04	2.98	0.00	2.602	0.60	0.00	5.1	94.8	0.1	1.93	0.41	0.67	0.70	—	10435	2101	7	0	0	0	0	logfile
✔	6LHW	0901	2024-09-26	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.28	0.0	0.04	6.20	0.00	2.244	9.56	0.00	0.0	0.0	0.0	—	2.92	0.85	0.76	—	7644	0	3	0	1541	0	0	logfile
✔	6LHV	0900	2024-09-27	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.59	—	4.4	0.010	1.33	0.0	0.04	6.42	0.00	2.267	12.16	0.00	0.0	0.0	0.0	—	3.57	0.84	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	8SLE	40577	2024-09-28	2023-04-21	4.3	4.73	4.56	4.2	0.005	0.90	0.0	0.05	5.48	0.00	1.914	8.93	0.00	6.1	93.9	0.0	-1.98	0.62	0.61	—	4.2	0.005	0.72	0.0	0.04	5.77	0.00	2.437	3.38	0.00	9.0	91.0	0.0	-1.03	1.44	0.62	0.68	—	17388	3468	4	0	0	0	0	logfile
✔	8CGL	16647	2024-09-30	2023-02-05	4.1	6.82	4.33	4.1	0.008	1.07	4.0	0.07	5.62	0.01	2.267	9.85	4.00	7.0	92.8	0.2	-0.82	0.83	0.66	—	4.2	0.004	0.72	0.0	0.05	4.76	0.00	2.395	4.90	0.00	9.2	90.8	0.0	-0.62	1.41	0.90	0.82	—	16732	2212	4	0	0	0	5572	logfile
✔	6CoZ	7545	2024-09-23	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.75	0.0	0.04	4.73	0.00	2.618	2.65	0.00	5.8	94.2	0.0	-0.93	1.54	0.82	0.76	—	1586	320	2	0	0	0	0	logfile
✔	7N9Q	24259	2024-09-24	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.5	0.003	1.00	0.0	0.00	5.05	0.00	2.580	6.76	0.00	12.3	86.7	0.9	-4.51	2.40	0.85	0.81	—	6945	2315	1	0	0	0	0	logfile
✔	6SH5	10194	2024-09-26	2019-08-05	4.6	4.70	—	4.5	0.005	0.97	0.0	0.05	5.65	0.01	2.474	2.35	0.00	9.0	91.0	0.0	-3.63	0.80	0.76	—	4.5	0.003	0.76	0.0	0.04	4.58	0.00	2.594	2.53	0.00	9.0	91.0	0.0	-2.95	1.62	0.82	0.82	—	11529	2338	7	0	0	0	0	logfile
✔	6ZGG	11205	2024-09-30	2020-06-18	3.8	4.33	4.00	4.0	0.001	0.41	0.0	0.04	5.80	0.00	2.231	3.83	1.00	12.4	87.1	0.5	-2.52	0.84	0.74	0.73	4.0	0.003	0.65	0.0	0.04	11.39	0.00	2.442	5.49	2.00	4.6	95.4	0.0	-0.58	1.76	0.87	0.82	1.20	25096	3207	3	0	0	0	0	logfile
✘	7RWA	24712	2024-09-27	2021-08-19	4.7	5.66	4.89	4.6	0.003	0.89	0.0	0.05	5.84	0.00	1.914	2.65	0.00	5.8	93.7	0.5	-0.12	0.84	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16158	3244	10	0	0	0	0	logfile
✔	5VCA	8659	2024-09-27	2017-03-31	4.8	6.04	—	5.9	0.021	2.64	50.0	0.15	5.91	0.01	1.097	2.19	0.00	6.9	90.0	3.1	-4.41	0.73	0.70	—	5.8	0.003	0.67	0.0	0.04	5.07	0.00	2.223	2.32	0.00	12.2	87.8	0.0	-0.77	2.90	0.76	0.67	—	16080	3264	6	0	0	0	0	logfile
✘	6VE3	21153	2024-09-29	2019-12-28	4.3	4.68	4.39	4.4	0.005	1.17	2.0	0.07	5.96	0.01	2.179	22.46	0.00	3.4	96.3	0.3	-0.31	0.81	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22484	4578	14	0	0	0	0	logfile
✔	7N9Y	24264	2024-09-24	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.2	0.003	1.01	0.0	0.00	4.81	0.00	2.550	7.73	0.00	18.2	81.3	0.5	-4.24	2.61	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile

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