Table showing results for September 2024

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LC9	23270	2024-09-23	2021-01-10	3.2	3.25	—	3.1	0.004	0.72	0.0	0.05	17.46	0.00	1.884	31.60	18.58	13.4	86.6	0.0	-4.15	0.71	0.77	-0.84	3.1	0.003	0.67	0.0	0.05	17.24	0.00	2.562	21.16	7.96	10.4	89.6	0.0	-3.72	1.07	0.69	0.78	-0.31	3497	525	12	0	0	0	0	logfile
✘	6RJU	4906	2024-09-23	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1992	131	1	0	0	0	997	logfile
✔	7N8N	24238	2024-09-25	2021-06-15	3.89	5.26	—	4.4	0.006	0.85	0.0	0.04	27.93	0.01	2.035	27.61	0.00	9.6	90.4	0.0	-1.71	0.87	0.78	-0.56	4.4	0.004	0.77	0.0	0.04	28.55	0.01	2.408	16.54	2.01	4.8	94.9	0.3	-0.77	1.28	0.87	0.79	-0.05	11121	798	6	250	0	0	0	logfile
✔	8XBW	38231	2024-09-23	2023-12-07	2.89	5.59	1.82	5.3	0.006	1.06	0.0	0.05	23.74	0.01	1.155	13.10	0.00	0.8	99.2	0.0	-0.65	0.76	0.71	-0.50	5.3	0.005	1.27	0.0	0.06	23.55	0.00	2.473	27.75	2.48	3.4	96.6	0.0	-2.17	2.02	0.81	0.81	0.77	2671	242	5	36	0	0	0	logfile
✔	8PXB	18002	2024-09-24	2023-07-23	3.6	4.63	3.71	4.2	0.002	0.45	0.0	0.04	9.09	0.00	2.259	7.28	0.46	3.6	96.4	0.0	2.65	0.54	0.61	-0.50	4.2	0.004	0.98	0.0	0.05	14.11	0.00	2.405	18.57	1.74	6.1	93.9	0.0	0.37	1.46	0.55	0.73	-0.89	8102	1018	2	0	0	0	0	logfile
✘	7KU5	23034	2024-09-23	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	750	88	2	0	4	0	0	logfile
✘	8EFP	28087	2024-09-23	2022-09-08	3.8	4.73	3.90	4.0	0.006	1.46	7.0	0.09	18.61	0.01	1.908	33.65	3.07	13.3	86.7	0.0	-4.26	0.82	0.62	-0.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4705	594	2	0	0	0	0	logfile
✔	8UFE	42205	2024-09-23	2023-10-04	3.68	4.10	3.84	4.1	0.005	0.79	0.0	0.04	19.16	0.00	2.205	12.83	1.76	5.3	94.4	0.2	1.92	0.49	0.72	-0.41	4.1	0.003	0.66	0.0	0.04	18.34	0.00	2.458	12.83	5.88	5.3	94.4	0.2	1.75	0.38	0.53	0.74	0.06	3449	470	2	0	1	0	0	logfile
✔	8DWi	27755	2024-09-23	2022-08-01	3.4	4.06	3.58	4.1	0.003	0.63	0.0	0.04	13.02	0.01	2.258	7.44	0.00	5.0	95.0	0.0	0.29	0.28	0.33	-0.40	4.0	0.003	0.75	0.0	0.04	16.60	0.01	2.552	10.92	1.91	5.5	94.5	0.0	-0.61	1.64	0.47	0.71	2.20	3192	424	1	0	0	0	0	logfile
✔	7TMC	25995	2024-09-23	2022-01-19	3.25	3.24	2.95	4.2	0.005	0.72	0.0	0.07	18.02	0.01	2.152	13.78	0.00	9.5	90.5	0.0	-4.08	0.21	0.31	-0.39	3.5	0.005	0.91	0.0	0.07	16.21	0.01	2.419	15.39	5.56	14.0	86.0	0.0	-4.26	1.85	0.35	0.76	4.23	3426	405	6	0	12	0	0	logfile
✔	7Q4W	13819	2024-09-28	2021-11-02	3.78	5.84	—	4.5	0.005	0.84	0.0	0.05	13.85	0.01	2.186	8.26	0.52	3.1	96.8	0.0	-0.36	0.83	0.65	-0.36	4.5	0.004	0.74	0.0	0.05	15.57	0.00	2.244	15.27	1.91	4.1	95.9	0.0	-0.05	0.67	0.92	0.84	-0.03	18050	2364	12	0	22	0	0	logfile
✔	5VA2	8651	2024-09-27	2017-03-24	3.8	5.28	—	4.3	0.008	1.08	0.0	0.06	12.47	0.00	1.607	11.18	1.08	7.7	90.7	1.6	-3.86	0.64	0.74	-0.32	4.3	0.003	0.99	0.0	0.05	16.35	0.00	2.508	17.86	2.44	4.3	95.3	0.4	-1.38	1.93	0.67	0.83	0.16	17576	2232	4	0	0	0	0	logfile
✔	8A1R	15084	2024-09-25	2022-06-01	3.6	5.63	3.62	3.4	0.011	0.86	0.0	0.06	16.56	0.00	2.097	11.72	0.00	5.2	94.8	0.0	-0.06	0.91	0.75	-0.28	3.5	0.004	0.73	1.0	0.05	16.24	0.00	2.545	18.40	1.63	6.6	93.4	0.0	-0.38	0.60	0.95	0.86	-0.05	9286	1186	4	0	4	0	0	logfile
✔	7FG3	31577	2024-09-25	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.29	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.005	1.11	0.0	0.05	16.69	0.01	2.298	18.78	2.69	13.2	86.3	0.5	-3.44	0.77	0.22	0.43	0.35	9054	1166	2	0	0	0	0	logfile
✔	8P2M	17370	2024-09-23	2023-05-16	3.82	5.95	4.51	4.2	0.012	1.85	111.0	0.14	13.83	0.01	2.190	2.42	1.90	4.5	95.5	0.0	-1.71	0.87	0.76	-0.22	4.2	0.003	0.79	0.0	0.04	15.15	0.00	2.095	14.57	1.03	2.9	97.1	0.0	1.46	1.18	0.87	0.75	0.07	46702	5819	9	0	0	0	0	logfile
✔	7TTS	26122	2024-09-28	2022-02-01	2.9	12.34	—	—	0.008	0.99	1.0	0.08	12.97	0.01	1.788	5.64	0.30	3.2	96.6	0.1	1.89	0.77	0.55	-0.20	—	0.003	0.67	0.0	0.04	14.03	0.00	1.769	16.72	0.12	3.4	96.5	0.1	2.42	1.03	0.69	0.41	-0.43	18793	2686	12	0	23	0	0	logfile
✔	8iEM	35386	2024-09-24	2023-02-15	3.35	3.87	3.59	3.9	0.003	0.69	0.0	0.04	16.41	0.01	2.211	7.27	0.58	6.2	93.7	0.1	-1.00	0.51	0.55	-0.19	3.9	0.004	1.05	1.0	0.04	17.08	0.01	2.228	8.33	2.43	7.6	92.4	0.0	-0.92	0.94	0.56	0.71	0.28	7829	1011	2	0	3	0	0	logfile
✔	7YKS	33896	2024-09-28	2022-07-23	3.0	3.20	3.06	4.7	0.008	1.00	0.0	0.06	10.27	0.01	2.291	4.01	0.00	6.7	93.1	0.2	-6.58	0.17	0.11	-0.18	3.2	0.004	0.80	0.0	0.04	16.62	0.00	2.364	7.21	1.33	4.4	95.6	0.0	-0.50	2.17	0.60	0.80	1.50	18984	2364	4	0	0	0	0	logfile
✔	7RYE	24735	2024-09-28	2021-08-25	3.9	4.10	—	4.0	0.003	0.65	0.0	0.04	14.57	0.00	2.090	14.13	0.00	3.7	96.3	0.0	1.07	0.76	0.69	-0.18	4.0	0.003	0.71	0.0	0.04	17.95	0.00	2.435	13.23	3.94	3.9	96.1	0.0	1.35	1.10	0.81	0.81	0.26	19708	2535	24	0	0	0	0	logfile
✔	8CTG	26989	2024-09-23	2022-05-14	3.8	3.16	3.72	3.3	0.004	0.98	0.0	0.05	7.62	0.01	2.113	12.33	6.90	9.7	88.5	1.8	-3.04	0.57	0.35	-0.17	2.3	0.004	0.90	0.0	0.04	6.99	0.01	2.359	5.06	3.45	11.0	88.7	0.3	-2.69	1.99	0.59	0.42	1.71	5100	1006	4	0	1	0	0	logfile

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