Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CU8	7619	2024-09-23	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.3	0.004	0.78	0.0	0.05	12.31	0.00	2.516	12.31	4.84	9.7	90.3	0.0	-2.78	1.75	0.41	0.73	2.35	2880	410	10	0	0	0	0	logfile
✔	8J7o	36044	2024-09-29	2023-04-27	3.83	5.01	3.89	3.6	0.012	1.60	0.0	0.09	12.72	0.01	2.226	5.17	2.65	1.6	98.3	0.1	-0.24	0.78	0.52	-0.14	3.6	0.003	0.82	0.0	0.04	14.39	0.00	2.485	10.31	0.88	3.1	96.9	0.0	0.35	1.94	0.89	0.76	0.32	21168	2748	8	0	4	0	0	logfile
✘	8EAo	27792	2024-09-28	2022-08-29	3.2	4.04	3.15	20.0	0.003	0.60	0.0	0.05	14.09	0.00	2.197	10.56	0.10	3.6	96.4	0.0	1.03	0.18	0.04	-0.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	71628	8964	24	0	0	0	0	logfile
✔	7LJ3	23388	2024-09-30	2021-01-28	2.9	2.92	—	3.4	0.005	0.72	0.0	0.04	20.50	0.00	1.041	27.61	3.30	3.6	96.0	0.4	0.29	0.10	0.23	-0.14	2.9	0.003	0.60	0.0	0.03	21.69	0.00	2.281	5.53	4.04	4.8	95.1	0.0	2.64	1.40	0.22	0.78	1.64	25714	2564	12	225	0	0	0	logfile
✔	7VZF	32227	2024-09-23	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.45	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.005	1.00	0.0	0.05	19.17	0.00	2.269	12.50	6.74	19.4	80.6	0.0	-4.18	1.86	0.37	0.63	0.28	2628	363	3	0	0	0	0	logfile
✔	7R4R	14315	2024-09-24	2022-02-09	3.9	4.20	—	6.8	0.036	4.11	135.0	0.32	18.82	0.03	1.228	59.98	7.44	8.5	91.3	0.2	-3.20	0.62	0.41	-0.13	5.8	0.005	1.43	17.0	0.24	16.32	0.00	1.805	22.48	5.22	8.9	91.1	0.1	-2.49	1.29	0.67	0.59	-0.26	50505	3293	12	0	43	0	24171	logfile
✔	8E55	27903	2024-09-26	2022-08-19	3.85	4.07	3.34	4.0	0.007	0.67	0.0	0.03	12.36	0.00	2.252	3.39	0.50	2.5	97.5	0.0	1.17	0.66	0.60	-0.11	4.0	0.003	0.62	0.0	0.03	16.54	0.00	2.356	9.84	1.34	1.7	98.3	0.0	4.21	1.46	0.69	0.71	-0.11	12176	780	4	0	0	0	6104	logfile
✔	8YMK	39396	2024-09-23	2024-03-09	3.7	3.92	1.91	7.8	0.005	1.22	1.0	0.06	11.93	0.01	2.212	16.34	0.00	14.1	84.4	1.6	-1.73	0.59	0.62	-0.11	7.7	0.003	1.05	0.0	0.06	13.71	0.00	2.609	12.81	5.26	12.3	86.4	1.3	-1.08	1.86	0.59	0.60	-0.50	2744	452	2	0	0	0	0	logfile
✔	6UMM	20820	2024-09-29	2019-10-09	3.7	6.74	4.15	4.0	0.006	0.79	0.0	0.04	13.23	0.00	2.203	11.97	0.17	4.8	95.2	0.0	-2.07	0.55	0.56	-0.10	4.1	0.004	0.92	0.0	0.05	14.64	0.00	2.295	19.02	2.32	3.9	96.1	0.0	0.67	0.89	0.62	0.83	0.07	23658	3184	10	0	0	0	0	logfile
✔	8EDL	28035	2024-09-23	2022-09-05	3.7	3.30	3.60	3.1	0.002	0.52	0.0	0.03	11.07	0.00	2.307	6.09	0.00	2.1	97.7	0.3	2.83	0.62	0.61	-0.09	3.2	0.002	0.58	0.0	0.03	13.54	0.00	2.509	5.85	2.31	2.6	97.4	0.0	3.49	1.13	0.68	0.73	2.23	2470	395	1	0	0	0	0	logfile
✔	5G2X	3331	2024-09-28	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	21.03	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.007	1.06	0.0	0.05	25.06	0.01	1.903	37.36	5.67	23.3	75.6	1.1	-4.82	2.36	0.80	0.66	0.87	19072	487	3	704	0	0	0	logfile
✔	7UHB	26511	2024-09-23	2022-03-26	3.0	3.17	2.97	3.2	0.011	1.36	3.0	0.12	9.64	0.00	2.562	5.08	1.42	3.0	96.6	0.4	-0.52	0.52	0.54	-0.09	3.1	0.005	0.65	0.0	0.04	16.30	0.00	2.512	7.25	1.42	3.4	96.6	0.0	0.48	2.43	0.69	0.83	3.61	2141	270	3	0	3	0	0	logfile
✔	6Z5U	11082	2024-09-28	2020-05-27	3.9	4.52	—	38.0	0.021	1.88	10.0	0.11	12.69	0.01	0.901	4.89	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.1	0.003	0.70	0.0	0.04	14.26	0.00	2.078	9.20	1.38	3.8	96.1	0.0	0.52	1.51	0.27	0.14	0.60	17880	2334	14	0	4	0	0	logfile
✔	5MPP	3538	2024-09-28	2016-12-17	3.9	4.03	—	4.1	0.009	1.02	0.0	0.06	14.77	0.01	2.456	7.21	5.00	5.3	94.7	0.0	-3.86	0.58	0.49	-0.06	4.0	0.006	0.86	4.0	0.05	17.75	0.01	2.089	13.48	3.43	3.9	96.1	0.0	0.26	3.34	0.82	0.86	0.74	70560	9240	60	0	0	0	0	logfile
✘	8iEN	35387	2024-09-24	2023-02-15	3.25	3.66	3.30	7.2	0.004	1.21	0.0	0.04	14.04	0.00	2.168	8.43	0.24	5.0	94.9	0.1	-2.18	0.18	0.00	-0.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7678	991	2	0	4	0	0	logfile
✔	8GWG	34312	2024-09-29	2022-09-17	3.37	3.96	3.48	7.9	0.009	0.94	5.0	0.06	18.83	0.01	2.045	13.54	5.14	8.4	91.2	0.4	-1.94	0.59	0.16	-0.05	3.5	0.004	0.93	0.0	0.05	18.78	0.01	2.084	20.06	2.46	9.2	90.6	0.2	-2.60	1.95	0.78	0.66	0.36	21955	2668	13	52	9	1	0	logfile
✔	7R4Q	14314	2024-09-24	2022-02-09	3.6	3.14	—	5.7	0.022	3.26	109.0	0.39	16.09	0.02	1.866	30.29	3.30	8.7	91.1	0.2	-2.35	0.48	0.21	-0.05	4.0	0.005	1.10	8.0	0.17	15.29	0.01	1.971	20.81	1.38	7.9	92.1	0.0	-1.91	1.65	0.62	0.55	0.51	51420	3414	13	0	43	0	24182	logfile
✔	8K26	36829	2024-09-25	2023-07-12	3.6	3.91	3.69	3.7	0.006	1.31	1.0	0.07	17.74	0.01	2.221	8.76	0.71	5.7	94.1	0.2	-3.00	0.69	0.54	-0.04	3.7	0.006	1.01	1.0	0.05	17.51	0.00	2.233	23.17	2.56	5.8	94.0	0.2	-0.95	0.67	0.71	0.58	0.55	10549	1336	6	0	0	0	0	logfile
✔	7NZM	12665	2024-09-25	2021-03-24	3.96	6.56	4.22	4.2	0.007	1.12	0.0	0.06	14.32	0.01	1.774	11.10	0.00	3.8	96.2	0.0	-1.56	0.77	0.51	-0.04	4.3	0.003	0.77	0.0	0.04	15.07	0.00	2.079	11.88	0.42	2.4	97.6	0.0	0.57	1.48	0.95	0.85	0.23	9109	1157	8	0	4	0	0	logfile
✔	5VZL	8749	2024-09-26	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	17.27	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.002	0.66	0.0	0.04	18.12	0.00	1.459	9.05	1.33	4.8	95.2	0.0	-0.63	1.15	0.37	0.16	0.81	13915	1451	3	115	1	0	0	logfile

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