Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6GJ1	0009	2024-09-26	2018-05-15	4.7	4.83	—	4.4	0.010	1.51	5.0	0.07	11.65	0.01	0.341	23.90	0.72	18.3	81.3	0.4	-5.15	0.83	0.71	—	4.4	0.004	0.88	0.0	0.05	12.53	0.01	2.430	19.93	0.00	15.5	84.4	0.1	-3.56	1.16	0.85	0.76	—	13013	1638	4	0	0	0	0	logfile
✔	6GJ3	0010	2024-09-27	2018-05-15	4.3	4.02	—	3.9	0.008	1.19	0.0	0.06	10.34	0.01	2.248	5.14	0.37	13.5	86.2	0.3	-4.76	0.71	0.78	—	3.9	0.004	0.75	0.0	0.05	12.49	0.01	2.492	8.56	0.00	10.6	89.4	0.0	-1.67	0.73	0.71	0.78	—	17405	2194	7	0	0	0	0	logfile
✔	6GJZ	0012	2024-09-25	2018-05-17	4.06	4.32	3.49	4.1	0.011	1.11	0.0	0.05	14.45	0.01	2.008	13.98	0.00	10.8	88.9	0.3	-4.09	0.66	0.79	—	4.1	0.005	0.79	0.0	0.04	14.74	0.00	2.154	24.47	0.00	11.1	88.7	0.1	-0.98	1.52	0.67	0.80	—	10503	682	4	28	2	0	4402	logfile
✔	6GKH	0023	2024-09-25	2018-05-21	4.06	4.18	3.92	4.1	0.006	1.49	0.0	0.05	13.47	0.00	1.641	13.64	0.00	10.0	90.0	0.0	-4.26	0.61	0.79	—	4.1	0.002	1.04	0.0	0.04	14.68	0.00	1.788	18.25	0.16	7.1	92.9	0.0	-0.34	1.50	0.61	0.80	—	10587	685	4	30	4	0	4399	logfile
✔	6GKM	0024	2024-09-25	2018-05-21	3.87	4.07	2.00	4.0	0.007	0.98	0.0	0.05	13.93	0.00	2.134	11.37	0.16	9.7	90.2	0.1	-3.66	0.63	0.81	2.22	4.0	0.003	0.73	0.0	0.04	16.13	0.00	2.371	17.97	1.13	7.9	92.1	0.0	-0.18	1.46	0.62	0.82	2.00	10562	689	4	28	2	0	4402	logfile
✔	6GMH	0031	2024-09-24	2018-05-26	3.1	3.78	3.06	3.2	0.006	0.97	0.0	0.06	13.10	0.01	1.921	5.48	0.53	4.8	95.1	0.1	-2.86	0.83	0.81	2.87	3.3	0.003	0.67	0.0	0.04	15.01	0.00	2.053	7.93	1.42	5.1	94.9	0.0	0.27	1.20	0.84	0.84	2.35	50239	6397	31	106	525	0	0	logfile
✔	6GSA	0051	2024-09-27	2018-06-13	4.2	5.94	—	5.0	0.011	1.24	4.0	0.09	12.00	0.01	2.189	4.69	1.75	5.1	94.7	0.2	-2.92	0.67	0.44	—	5.0	0.004	0.74	0.0	0.04	12.53	0.00	2.386	16.95	0.00	5.3	94.7	0.0	-0.25	1.21	0.83	0.73	—	16272	1999	5	0	0	0	0	logfile
✔	6GTC	0061	2024-09-26	2018-06-18	3.91	3.85	—	3.8	0.004	0.94	0.0	0.05	16.56	0.01	2.275	5.90	0.86	8.8	91.2	0.0	-5.69	0.70	0.67	1.97	3.8	0.004	0.95	1.0	0.04	19.03	0.00	2.297	12.07	2.58	8.3	91.7	0.0	-2.96	1.13	0.71	0.70	1.69	11931	1280	4	65	0	0	0	logfile
✔	6GTD	0062	2024-09-24	2018-06-18	4.24	4.28	—	3.9	0.009	1.26	0.0	0.08	23.09	0.01	2.138	13.01	0.00	19.8	80.2	0.0	-5.72	0.78	0.65	—	3.8	0.008	0.99	0.0	0.07	21.95	0.00	1.835	16.75	0.00	21.4	78.6	0.0	-3.39	0.99	0.79	0.67	—	6456	1269	4	66	0	0	0	logfile
✔	6GTE	0063	2024-09-25	2018-06-18	4.07	3.99	—	3.9	0.009	1.11	0.0	0.06	17.33	0.01	2.232	8.08	0.75	15.6	84.3	0.1	-5.76	0.73	0.71	—	3.9	0.003	0.67	0.0	0.04	17.37	0.00	2.257	9.95	0.11	7.4	92.6	0.0	-3.17	0.81	0.72	0.68	—	10872	1274	4	67	0	0	0	logfile
✔	6GTF	0064	2024-09-25	2018-06-18	3.63	3.94	—	3.8	0.010	1.17	0.0	0.07	17.17	0.01	2.030	10.45	0.43	15.5	84.5	0.0	-5.84	0.72	0.64	1.89	3.8	0.004	1.02	2.0	0.05	18.83	0.00	2.022	12.91	4.20	8.9	91.1	0.0	-3.16	1.41	0.74	0.65	1.20	10871	1280	4	66	0	0	0	logfile
✔	6GTG	0065	2024-09-26	2018-06-18	3.27	3.35	—	3.3	0.009	1.07	0.0	0.06	16.10	0.01	2.051	6.65	0.69	14.5	85.5	0.0	-5.96	0.68	0.75	2.90	3.3	0.003	0.65	0.0	0.04	17.97	0.00	2.042	10.27	2.85	10.0	90.0	0.0	-3.19	1.14	0.69	0.76	1.81	12538	1298	8	91	4	3	0	logfile
✔	6GX5	0077	2024-09-23	2018-06-26	3.2	2.51	2.94	3.2	0.017	1.20	0.0	0.11	16.09	0.01	2.596	5.96	4.94	4.3	95.7	0.0	-3.50	0.85	0.88	5.60	3.2	0.006	0.77	0.0	0.05	18.24	0.00	2.589	7.33	4.94	5.1	94.9	0.0	-2.93	0.59	0.83	0.86	5.04	2133	282	3	0	0	0	0	logfile
✔	6GY6	0088	2024-09-29	2018-06-28	4.0	3.98	—	3.8	0.006	0.88	0.0	0.05	10.55	0.01	2.234	4.84	1.08	2.6	97.4	0.0	-4.40	0.90	0.84	—	3.8	0.003	0.65	0.0	0.04	14.55	0.00	2.451	8.77	1.32	2.1	97.9	0.0	2.47	0.92	0.90	0.85	—	72462	9139	26	0	0	0	0	logfile
✔	6GYB	0089	2024-09-26	2018-06-28	3.28	3.42	—	3.4	0.008	0.92	0.0	0.06	9.51	0.01	2.304	4.03	0.22	6.6	93.4	0.0	-4.49	0.81	0.87	4.60	3.4	0.005	0.64	0.0	0.05	14.19	0.00	2.465	4.77	1.93	5.4	94.6	0.0	-1.02	0.55	0.81	0.89	3.56	59318	7546	42	0	0	0	0	logfile
✔	6GYN	0093	2024-09-28	2018-06-30	3.4	3.66	3.52	3.6	0.008	0.85	0.0	0.05	10.50	0.01	2.273	3.08	0.00	4.7	95.3	0.0	-2.56	0.66	0.83	3.51	3.6	0.003	0.58	0.0	0.04	13.23	0.00	2.531	5.99	0.87	3.2	96.8	0.0	2.71	0.48	0.64	0.83	1.84	16932	1980	8	0	36	0	0	logfile
✔	6GYP	0095	2024-09-28	2018-07-01	3.6	3.70	—	3.7	0.006	0.95	0.0	0.05	10.75	0.01	2.259	4.86	0.50	7.1	92.8	0.1	-4.51	0.57	0.68	2.48	3.7	0.004	0.68	0.0	0.04	14.83	0.00	2.456	8.93	3.06	5.6	94.4	0.0	-0.63	0.72	0.75	0.83	1.30	17811	2148	6	0	0	0	0	logfile
✔	6GYU	0097	2024-09-28	2018-07-02	3.0	3.35	—	3.3	0.005	0.94	0.0	0.05	10.80	0.01	1.349	6.02	0.74	6.4	93.4	0.3	-4.30	0.70	0.73	3.36	3.2	0.004	0.70	0.0	0.04	15.17	0.00	2.465	9.59	1.92	6.2	93.8	0.0	-0.15	1.69	0.79	0.85	2.63	18159	2193	6	0	2	0	0	logfile
✔	6H25	0128	2024-09-29	2018-07-13	3.8	3.89	—	3.9	0.006	1.10	1.0	0.06	11.14	0.01	1.101	12.90	1.51	5.7	93.9	0.4	-2.77	0.49	0.63	1.51	3.9	0.003	0.69	0.0	0.04	16.02	0.00	2.339	8.35	4.45	4.8	95.1	0.0	0.01	0.75	0.70	0.82	1.48	22138	2971	12	6	0	0	0	logfile
✔	6H3C	0132	2024-09-24	2018-07-18	3.9	3.99	3.83	3.9	0.020	1.86	0.0	0.10	10.54	0.01	1.965	1.76	0.00	5.3	94.2	0.4	-0.37	0.73	0.68	1.52	3.9	0.003	0.67	0.0	0.04	14.94	0.00	1.747	9.34	1.59	6.8	92.9	0.3	-0.67	1.00	0.75	0.71	1.64	49982	3146	14	0	2	2	24860	logfile

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