Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6H3i	0133	2024-09-28	2018-07-18	3.5	3.59	—	3.5	0.009	0.92	0.0	0.05	10.08	0.01	2.012	39.59	0.40	21.4	78.4	0.2	-5.64	0.78	0.86	4.47	3.5	0.006	0.67	0.0	0.04	13.26	0.00	2.179	47.89	1.91	20.9	79.0	0.1	-4.39	2.52	0.78	0.87	3.48	20599	2597	3	0	0	0	53	logfile
✔	6H3J	0134	2024-09-28	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.38	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.002	0.60	0.0	0.04	13.57	0.00	2.264	50.41	2.03	17.9	82.1	0.0	-5.00	2.68	0.77	0.86	2.67	20301	2511	3	0	0	0	212	logfile
✔	6H5i	0140	2024-09-24	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.64	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.8	0.004	0.76	0.0	0.04	14.94	0.00	2.349	13.32	1.45	4.3	95.7	0.0	1.08	1.21	0.37	0.24	0.26	43900	5392	26	0	0	0	0	logfile
✔	6H61	0143	2024-09-25	2018-07-25	4.02	4.20	3.87	4.0	0.007	0.84	0.0	0.05	13.66	0.00	2.107	14.74	0.18	9.5	90.5	0.0	-2.98	0.62	0.78	—	4.0	0.003	0.63	0.0	0.04	14.79	0.00	2.332	21.99	0.00	8.6	91.4	0.0	0.18	1.81	0.63	0.78	—	9912	660	4	30	1	0	4057	logfile
✔	6H66	0145	2024-09-25	2018-07-26	4.16	4.23	3.99	4.2	0.008	0.88	0.0	0.05	13.22	0.01	2.070	15.41	0.17	10.4	89.4	0.2	-3.09	0.61	0.76	—	4.2	0.002	0.63	0.0	0.04	15.11	0.00	2.308	18.78	0.00	8.0	92.0	0.0	0.41	1.84	0.62	0.77	—	10017	667	4	30	1	0	4120	logfile
✔	6H6B	0148	2024-09-24	2018-07-26	3.4	3.13	—	3.5	0.008	1.10	0.0	0.20	8.13	0.00	2.530	5.82	0.00	14.3	85.7	0.0	-4.80	0.44	0.74	5.60	3.3	0.004	0.87	0.0	0.18	11.72	0.00	2.490	4.58	3.75	17.7	82.3	0.0	-3.72	1.82	0.40	0.77	3.62	8060	580	10	0	0	0	4100	logfile
✔	6HBU	0190	2024-09-25	2018-08-13	3.09	3.04	—	3.1	0.009	1.18	0.0	0.06	11.56	0.01	1.965	4.88	0.00	4.9	94.6	0.5	-5.40	0.75	0.86	5.08	3.1	0.003	0.69	0.0	0.04	15.33	0.00	2.235	6.89	1.81	5.3	94.5	0.2	0.96	0.54	0.78	0.88	3.72	9146	1168	4	0	4	0	0	logfile
✔	6HCo	0196	2024-09-26	2018-08-15	3.58	4.08	—	3.7	0.009	1.05	0.0	0.06	10.57	0.01	2.082	7.85	0.45	7.9	92.1	0.0	-4.59	0.65	0.75	1.63	3.7	0.007	0.85	0.0	0.05	13.31	0.00	2.480	16.35	2.38	6.8	93.2	0.0	-0.43	1.47	0.67	0.83	2.15	12338	1576	9	0	5	0	0	logfile
✔	6HD5	0201	2024-09-25	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.79	0.0	0.04	11.83	0.00	2.476	16.34	0.00	5.6	94.2	0.2	-0.50	2.01	0.45	0.56	—	9707	1234	3	0	0	0	0	logfile
✔	6HE4	0209	2024-09-26	2018-08-20	4.85	4.88	—	4.8	0.036	3.65	111.0	0.21	19.33	0.03	1.953	1.83	3.66	6.4	89.5	4.1	-2.84	0.55	0.56	—	4.8	0.005	1.08	0.0	0.05	15.23	0.01	1.851	29.15	0.00	8.0	91.3	0.7	-1.45	1.95	0.58	0.77	—	12684	1602	11	0	10	0	0	logfile
✔	6HE5	0210	2024-09-30	2018-08-20	4.12	4.16	—	4.2	0.036	3.51	183.0	0.20	17.65	0.03	2.236	2.09	4.51	5.3	92.5	2.2	-2.68	0.54	0.60	—	4.1	0.005	0.87	0.0	0.05	14.56	0.01	2.355	18.86	0.00	4.1	95.7	0.2	-0.68	1.74	0.57	0.75	—	24633	3162	20	0	0	0	0	logfile
✔	6HE7	0211	2024-09-29	2018-08-20	3.69	3.80	—	3.8	0.039	3.60	213.0	0.21	17.65	0.03	2.081	3.03	4.93	5.6	92.9	1.6	-2.44	0.64	0.70	2.28	3.8	0.012	0.74	0.0	0.05	17.62	0.00	1.914	10.08	3.12	3.2	96.8	0.0	0.04	0.89	0.62	0.78	1.58	23821	3059	14	0	0	0	0	logfile
✔	6HiN	0225	2024-09-26	2018-08-30	4.1	4.24	—	4.2	0.010	1.21	0.0	0.07	12.35	0.01	2.367	6.61	0.32	1.5	98.5	0.0	-4.98	0.81	0.83	—	4.1	0.004	0.78	0.0	0.05	11.80	0.00	2.461	12.24	0.00	4.1	95.9	0.0	-2.52	0.70	0.82	0.83	—	14220	1675	20	0	30	0	0	logfile
✔	6Hio	0226	2024-09-27	2018-08-30	4.2	4.49	—	4.2	0.010	1.17	0.0	0.06	12.20	0.01	2.185	8.32	0.29	1.9	98.1	0.0	-3.81	0.89	0.85	—	4.2	0.003	0.66	0.0	0.04	11.21	0.00	2.314	8.85	0.17	2.4	97.6	0.0	-0.68	0.67	0.88	0.84	—	16085	1925	20	0	30	0	0	logfile
✔	6HiQ	0227	2024-09-27	2018-08-30	3.2	3.35	—	3.3	0.007	1.08	0.0	0.06	10.85	0.01	2.319	4.20	0.29	1.6	98.4	0.0	-4.97	0.82	0.84	3.78	3.3	0.003	0.65	0.0	0.04	13.41	0.00	2.528	5.08	2.43	3.2	96.8	0.0	0.05	1.29	0.83	0.87	3.15	16110	1925	20	0	30	0	0	logfile
✔	6HiS	0228	2024-09-27	2018-08-30	4.5	4.60	—	4.5	0.011	1.57	0.0	0.08	14.28	0.01	2.228	16.80	0.29	4.9	95.1	0.0	-2.60	0.76	0.77	—	4.5	0.003	0.73	0.0	0.05	12.60	0.00	2.029	10.64	0.00	9.0	91.0	0.0	-1.18	0.84	0.76	0.77	—	16240	1935	25	0	40	0	0	logfile
✔	6HJN	0234	2024-09-26	2018-09-04	3.3	3.88	3.28	3.6	0.008	1.23	3.0	0.11	15.25	0.02	1.734	5.04	2.80	8.9	91.1	0.0	-3.22	0.91	0.91	4.09	3.6	0.003	0.71	0.0	0.04	13.56	0.00	2.487	4.70	1.48	7.9	92.1	0.0	-0.07	0.57	0.89	0.89	3.20	12309	1488	24	0	48	0	0	logfile
✔	6HJP	0235	2024-09-29	2018-09-04	3.3	3.74	3.29	3.5	0.008	1.17	9.0	0.09	14.76	0.02	2.158	3.91	2.40	7.9	91.9	0.2	-2.34	0.88	0.90	3.43	3.5	0.003	0.66	0.0	0.04	13.55	0.00	2.463	4.51	1.89	4.2	95.8	0.0	0.13	0.62	0.87	0.89	2.72	22134	2784	30	0	51	0	0	logfile
✔	6HJQ	0236	2024-09-29	2018-09-04	4.1	4.38	4.03	4.1	0.006	0.94	0.0	0.06	12.72	0.01	1.406	4.81	0.13	5.6	94.3	0.1	-3.06	0.83	0.87	—	4.1	0.003	0.66	0.0	0.04	11.35	0.00	2.505	7.49	0.00	4.8	95.2	0.0	-0.27	1.65	0.83	0.87	—	22530	2871	27	0	42	0	0	logfile
✔	6HJR	0237	2024-09-26	2018-09-04	4.2	4.57	4.24	4.3	0.009	1.13	0.0	0.07	13.66	0.01	2.200	6.58	0.70	10.6	89.2	0.2	-3.38	0.84	0.88	—	4.3	0.003	0.65	0.0	0.04	12.17	0.00	2.372	6.91	0.00	7.3	92.5	0.1	-0.96	0.59	0.83	0.87	—	12579	1578	19	0	31	0	0	logfile

• ← previous
• Page 2 of 538
• next →