Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6HN4	0246	2024-09-23	2018-09-14	4.2	4.43	—	4.1	0.007	1.50	2.0	0.07	9.90	0.01	2.187	6.18	0.00	6.9	91.4	1.8	-2.18	0.73	0.70	—	4.2	0.004	0.72	0.0	0.05	11.56	0.00	2.524	9.67	0.00	7.7	92.3	0.0	-0.32	1.13	0.76	0.78	—	5702	700	3	0	6	0	0	logfile
✔	6HN5	0247	2024-09-24	2018-09-14	3.2	3.48	—	3.3	0.012	1.20	0.0	0.07	10.56	0.01	2.281	7.43	0.12	10.8	89.2	0.0	-3.94	0.76	0.77	3.25	3.3	0.004	0.74	0.0	0.05	13.19	0.00	2.428	8.86	1.62	7.4	92.6	0.0	-2.38	0.75	0.78	0.80	2.44	7869	953	7	0	11	0	0	logfile
✔	6HQE	0252	2024-09-24	2018-09-24	4.4	4.34	—	4.4	0.009	1.25	0.0	0.06	9.67	0.01	2.307	6.79	0.00	4.8	95.2	0.0	-7.05	0.65	0.85	—	4.4	0.005	0.83	0.0	0.04	12.09	0.01	2.495	18.08	0.00	4.4	95.6	0.0	1.46	0.97	0.65	0.85	—	9360	1196	52	0	0	0	0	logfile
✔	6HRE	0259	2024-09-23	2018-09-26	3.2	2.74	2.87	3.3	0.019	1.47	0.0	0.11	13.34	0.01	2.474	6.01	0.00	12.0	88.0	0.0	-4.17	0.32	0.80	4.40	3.3	0.005	0.84	0.0	0.05	17.20	0.00	2.598	6.15	2.99	8.2	91.8	0.0	-3.49	0.75	0.29	0.78	3.74	3522	462	6	0	0	0	0	logfile
✔	6HRF	0260	2024-09-23	2018-09-26	3.3	3.38	2.95	3.5	0.016	1.25	0.0	0.09	13.68	0.01	2.627	7.82	0.00	13.3	86.7	0.0	-4.08	0.38	0.74	2.93	3.5	0.004	0.82	0.0	0.05	16.44	0.00	2.555	5.45	1.99	4.4	95.6	0.0	-3.40	4.59	0.36	0.77	3.42	3522	462	6	0	0	0	0	logfile
✔	6HS7	0264	2024-09-24	2018-09-28	4.6	3.02	4.27	4.3	0.006	1.00	1.0	0.05	14.59	0.01	2.156	6.39	0.04	10.5	89.5	0.0	-5.02	0.77	0.69	—	4.3	0.003	0.74	0.0	0.04	14.04	0.00	2.454	9.09	0.02	7.7	92.3	0.0	-2.16	0.93	0.79	0.72	—	52890	6905	25	0	0	0	0	logfile
✔	6HU7	0273	2024-09-23	2018-10-05	2.8	2.82	2.83	2.9	0.008	0.78	0.0	0.05	9.81	0.01	2.130	10.26	0.36	2.7	96.8	0.5	-3.47	0.49	0.84	4.61	2.9	0.003	0.63	0.0	0.04	15.23	0.00	2.484	7.08	1.28	2.0	97.6	0.3	2.94	1.60	0.54	0.87	3.67	4890	609	7	0	0	0	0	logfile
✔	6HUD	0274	2024-09-23	2018-10-06	4.0	4.06	—	4.3	0.007	1.12	0.0	0.07	8.28	0.01	2.020	5.62	0.00	8.2	91.8	0.0	-5.06	0.59	0.76	—	4.3	0.005	0.84	0.0	0.05	13.46	0.00	2.547	16.30	1.52	10.7	89.3	0.0	-5.00	1.48	0.57	0.79	—	2905	385	5	0	0	0	0	logfile
✔	6HV8	0287	2024-09-25	2018-10-10	4.4	4.51	—	4.4	0.009	1.62	2.0	0.08	10.20	0.01	1.472	8.97	1.31	22.1	77.3	0.6	-4.84	0.74	0.72	—	4.4	0.003	0.85	0.0	0.05	13.10	0.00	2.426	10.12	0.00	12.0	88.0	0.0	-2.47	1.46	0.74	0.71	—	9206	1184	3	0	2	0	0	logfile
✔	6HV9	0288	2024-09-23	2018-10-10	4.98	4.88	—	4.5	0.012	1.86	14.0	0.09	12.30	0.01	1.447	9.25	0.49	10.9	88.8	0.3	-4.02	0.78	0.66	—	4.5	0.003	0.76	0.0	0.04	13.35	0.00	2.341	11.27	0.00	7.7	92.2	0.1	-1.27	1.65	0.79	0.67	—	47617	6040	18	49	4	0	0	logfile
✔	6HXX	0297	2024-09-27	2018-10-18	3.4	3.76	3.51	3.7	0.008	1.14	0.0	0.07	13.79	0.01	1.586	8.35	0.28	8.1	91.9	0.0	-3.79	0.53	0.84	2.51	3.7	0.003	0.68	0.0	0.04	16.95	0.00	2.413	10.14	2.25	7.5	92.5	0.0	-0.30	1.24	0.56	0.86	2.11	65765	7840	70	175	0	0	0	logfile
✔	6HYD	0308	2024-09-26	2018-10-19	3.9	4.01	—	4.0	0.004	0.85	0.0	0.05	9.33	0.01	2.319	2.63	0.24	5.7	94.0	0.3	-6.69	0.74	0.77	2.59	4.0	0.003	0.67	0.0	0.04	14.51	0.00	2.390	4.09	3.21	5.9	93.9	0.2	-0.97	1.73	0.76	0.79	1.53	12168	1543	2	0	31	0	0	logfile
✔	6HYP	0309	2024-09-26	2018-10-22	4.4	4.53	—	4.4	0.003	0.72	0.0	0.05	8.72	0.00	1.943	1.67	0.34	7.3	92.2	0.4	-5.99	0.75	0.69	—	4.4	0.004	0.79	0.0	0.04	8.75	0.00	2.438	3.74	0.00	12.8	87.0	0.1	-1.46	0.62	0.77	0.74	—	12392	2082	2	0	192	0	0	logfile
✘	6HZ5	0311	2024-09-28	2018-10-22	4.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67654	4120	26	6	12	0	33440	logfile
✘	6HZ6	0312	2024-09-28	2018-10-22	4.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67654	4120	26	6	12	0	33440	logfile
✘	6HZ7	0313	2024-09-28	2018-10-22	4.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67654	4120	26	6	12	0	33440	logfile
✘	6HZ8	0314	2024-09-28	2018-10-22	4.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67654	4120	26	6	12	0	33440	logfile
✘	6HZ9	0315	2024-09-28	2018-10-22	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67654	4120	26	6	12	0	33440	logfile
✔	6i1X	0326	2024-09-25	2018-10-30	3.7	3.83	—	3.8	0.013	1.81	34.0	0.10	14.94	0.01	0.458	50.06	4.35	7.5	90.6	1.9	-3.51	0.50	0.32	0.28	3.8	0.005	0.86	0.0	0.05	16.69	0.01	2.397	16.68	3.28	8.2	91.6	0.3	-1.84	1.03	0.65	0.61	0.89	54915	7290	15	0	0	0	0	logfile
✔	6i1Y	0327	2024-09-25	2018-10-30	3.4	3.52	—	3.4	0.015	2.01	16.0	0.10	13.31	0.02	1.301	75.63	0.72	10.9	85.8	3.3	-5.20	0.79	0.83	1.55	3.4	0.004	0.73	0.0	0.05	16.15	0.01	2.410	13.18	2.74	7.1	92.7	0.2	-1.93	1.89	0.78	0.79	1.77	56520	7440	15	0	0	0	0	logfile

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