Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JGG	22326	2024-09-23	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.6	0.003	0.58	0.0	0.04	13.02	0.00	2.280	86.02	0.00	6.1	93.9	0.0	0.54	1.33	0.66	0.71	—	4210	506	1	0	0	0	28	logfile
✔	7M69	23691	2024-09-29	2021-03-25	3.42	4.12	4.11	4.1	0.006	0.87	0.0	0.04	13.25	0.01	2.304	0.82	1.29	5.1	94.9	0.0	-0.08	0.52	0.70	1.11	4.1	0.004	0.61	0.0	0.04	15.58	0.00	2.145	9.48	2.57	6.1	93.9	0.1	1.17	1.00	0.53	0.72	1.01	21795	1390	1	0	0	0	10912	logfile
✔	7V0X	26952	2024-09-23	2022-05-11	3.0	2.83	2.92	2.9	0.002	0.63	0.0	0.04	19.06	0.01	2.211	6.52	5.05	4.0	96.0	0.0	0.72	0.61	0.88	3.78	2.9	0.004	0.57	0.0	0.04	18.68	0.00	2.620	7.40	3.03	4.6	95.4	0.0	1.73	0.46	0.60	0.88	3.11	2818	375	1	0	0	0	0	logfile
✔	7ZC4	14619	2024-09-26	2022-03-25	3.24	2.31	3.25	3.4	0.003	0.66	0.0	0.04	15.19	0.00	2.152	12.98	0.00	3.6	96.4	0.0	2.81	0.64	0.60	1.74	3.4	0.003	0.63	0.0	0.04	16.53	0.00	2.588	11.33	1.30	3.0	97.0	0.0	2.29	1.15	0.68	0.65	1.77	7272	926	1	0	0	0	0	logfile
✔	7KVE	23048	2024-09-25	2020-11-27	3.3	3.69	3.38	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	17.32	0.57	18.2	81.4	0.4	-5.88	0.75	0.73	2.61	3.6	0.003	0.69	0.0	0.04	16.39	0.01	2.273	7.84	2.69	11.5	88.5	0.0	-3.84	0.48	0.75	0.73	2.23	11142	1374	1	0	0	0	0	logfile
✘	7ZFW	14704	2024-09-26	2022-04-01	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13188	0	1	615	0	0	0	logfile
✔	7P03	13142	2024-09-29	2021-06-29	3.45	3.78	—	3.7	0.006	0.68	0.0	0.04	13.86	0.00	1.801	6.52	0.00	5.4	94.6	0.0	-0.70	0.62	0.71	1.37	3.7	0.003	0.53	0.0	0.04	15.92	0.00	2.419	4.49	0.87	3.6	96.4	0.0	0.83	0.87	0.63	0.77	1.92	21149	1333	1	0	0	0	10498	logfile
✔	7PQ5	13587	2024-09-24	2021-09-16	3.17	3.58	3.09	3.4	0.005	0.85	0.0	0.05	15.55	0.01	2.255	3.50	2.82	4.5	95.3	0.2	-0.13	0.85	0.87	5.15	3.4	0.003	0.63	0.0	0.04	15.76	0.00	2.412	2.96	0.68	4.7	95.3	0.0	-0.02	1.10	0.82	0.88	4.53	8512	1047	1	0	0	0	0	logfile
✔	7KTV	23031	2024-09-24	2020-11-24	4.5	4.83	—	4.5	0.006	1.06	0.0	0.06	12.50	0.01	2.221	17.73	0.12	6.5	93.5	0.0	-5.20	0.80	0.79	—	6.7	0.003	0.74	0.0	0.04	13.06	0.00	2.370	15.65	0.00	4.0	96.0	0.0	-0.38	1.23	0.79	0.76	—	7577	995	1	0	0	0	0	logfile
✔	7W88	32353	2024-09-24	2021-12-07	3.5	3.65	—	3.6	0.003	0.71	0.0	0.04	16.87	0.00	2.225	15.29	8.23	15.2	84.8	0.0	-5.15	0.70	0.69	1.82	3.6	0.004	0.74	0.0	0.04	17.68	0.01	2.397	13.61	8.35	17.4	82.6	0.0	-3.36	0.48	0.70	0.70	1.50	7138	896	1	0	0	0	0	logfile
✔	7KVF	23049	2024-09-25	2020-11-28	3.6	4.39	3.76	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	17.32	0.57	18.2	81.4	0.4	-5.88	0.82	0.66	1.37	3.6	0.003	0.83	0.0	0.05	16.27	0.01	2.361	14.68	1.96	12.1	87.9	0.0	-3.72	2.39	0.87	0.76	0.76	11142	1374	1	0	0	0	0	logfile
✔	8CK0	16688	2024-09-23	2023-02-14	3.8	3.83	3.70	3.8	0.005	0.80	0.0	0.05	16.63	0.01	2.259	15.81	0.00	5.3	94.7	0.0	0.79	0.17	0.78	1.47	3.8	0.003	0.71	0.0	0.04	18.09	0.00	2.414	9.25	4.11	3.6	96.4	0.0	2.05	0.75	0.18	0.79	1.48	3762	478	1	0	0	0	0	logfile
✔	7KTT	23029	2024-09-24	2020-11-24	4.17	4.46	—	4.2	0.007	1.04	0.0	0.06	13.23	0.01	2.239	12.66	0.25	5.7	94.3	0.0	-5.41	0.81	0.78	—	4.2	0.003	0.73	0.0	0.04	13.81	0.00	2.334	14.88	0.00	2.9	97.1	0.0	0.18	0.69	0.80	0.76	—	7568	994	1	0	0	0	0	logfile
✔	7KTU	23030	2024-09-24	2020-11-24	4.15	4.49	—	4.2	0.006	1.05	0.0	0.05	12.61	0.01	2.259	12.91	0.37	4.3	95.7	0.0	-5.35	0.81	0.79	—	4.2	0.003	0.75	0.0	0.04	13.22	0.00	2.319	14.02	0.00	2.9	97.1	0.0	-0.05	0.89	0.80	0.76	—	7577	995	1	0	0	0	0	logfile
✔	7KTW	23032	2024-09-24	2020-11-24	4.27	4.73	—	4.4	0.007	1.12	0.0	0.05	12.46	0.01	2.214	14.28	0.12	5.1	94.9	0.0	-4.61	0.81	0.82	—	4.4	0.004	0.78	0.0	0.04	13.76	0.00	2.340	18.32	0.00	3.2	96.8	0.0	0.07	0.91	0.80	0.80	—	7577	995	1	0	0	0	0	logfile
✔	6JXC	9893	2024-09-27	2019-04-23	4.1	4.20	—	4.1	0.018	1.71	0.0	0.09	8.99	0.01	2.221	4.77	0.38	9.3	87.7	3.0	-1.28	0.50	0.61	—	4.1	0.003	0.81	0.0	0.04	12.05	0.00	2.429	8.21	0.00	11.6	86.6	1.8	0.01	1.00	0.55	0.69	—	15270	2345	1	0	0	0	0	logfile
✔	7JGD	22323	2024-09-28	2020-07-19	3.38	3.68	—	3.6	0.002	0.43	0.0	0.05	12.94	0.00	2.123	11.45	0.00	3.9	96.1	0.0	1.18	0.61	0.66	2.22	3.6	0.003	0.52	0.0	0.05	14.82	0.00	2.286	10.97	1.00	7.1	92.9	0.0	0.53	0.47	0.64	0.72	1.88	20292	1435	1	0	0	0	8505	logfile
✔	8H8B	34541	2024-09-24	2022-10-22	3.16	3.37	3.20	3.3	0.001	0.46	0.0	0.04	13.00	0.00	2.226	6.42	0.67	6.3	93.7	0.0	-2.99	0.70	0.76	2.74	3.3	0.004	0.71	0.0	0.05	15.58	0.00	2.498	5.74	2.36	11.4	88.6	0.0	-1.82	0.62	0.74	0.85	3.71	8344	1027	1	0	0	0	0	logfile
✔	7UVT	26816	2024-09-26	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	24.65	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.72	0.0	0.04	24.87	0.01	2.091	16.76	0.00	0.0	0.0	0.0	—	0.48	0.78	0.78	—	12409	0	1	386	0	0	4149	logfile
✔	7DCQ	30639	2024-09-23	2020-10-26	2.9	3.09	—	3.1	0.006	0.95	1.0	0.06	10.61	0.01	2.378	4.64	0.85	4.1	95.9	0.0	-3.49	0.70	0.81	4.02	3.1	0.004	1.09	1.0	0.05	15.83	0.00	2.312	9.10	2.21	3.8	96.2	0.0	0.75	0.64	0.69	0.83	3.27	5197	653	1	0	0	0	0	logfile

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