Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WJG	37579	2024-09-23	2023-09-25	3.0	3.18	2.87	3.3	0.005	1.21	0.0	0.06	15.28	0.01	2.211	6.71	2.03	2.6	97.4	0.0	0.84	0.51	0.73	1.85	3.3	0.003	0.70	0.0	0.04	16.31	0.00	2.591	9.11	2.03	2.1	97.9	0.0	1.85	0.44	0.50	0.74	2.39	3952	533	1	0	0	0	0	logfile
✔	8oEF	16825	2024-09-26	2023-03-10	4.0	3.42	4.07	4.5	0.002	0.47	0.0	0.04	15.21	0.00	2.235	5.57	0.00	1.7	98.3	0.0	0.95	0.63	0.45	—	4.5	0.002	0.55	0.0	0.04	16.09	0.00	2.346	8.15	1.33	2.4	97.6	0.0	1.01	0.58	0.65	0.50	—	9687	612	1	0	0	0	4859	logfile
✔	9AYB	43984	2024-09-23	2024-03-07	3.19	3.65	3.20	3.6	0.003	0.52	0.0	0.04	12.73	0.00	2.313	2.08	0.57	0.9	99.1	0.0	1.23	0.44	0.79	2.78	3.6	0.003	0.54	0.0	0.04	14.43	0.00	2.603	3.57	1.42	1.4	98.6	0.0	1.80	0.33	0.43	0.79	1.91	3347	428	1	0	0	0	0	logfile
✔	8Wi3	37556	2024-09-25	2023-09-24	3.38	3.85	3.53	3.8	0.004	0.68	0.0	0.04	17.11	0.00	2.187	6.04	0.38	6.6	93.3	0.1	1.08	0.63	0.76	0.50	3.8	0.003	0.57	0.0	0.04	17.57	0.00	2.525	4.22	2.40	6.5	93.3	0.2	1.56	0.36	0.64	0.74	0.58	9489	1208	1	0	0	0	0	logfile
✔	8XiU	38390	2024-09-23	2023-12-20	4.0	4.13	4.19	4.1	0.002	0.55	0.0	0.04	10.64	0.00	2.357	6.37	1.08	1.5	98.5	0.0	2.65	0.48	0.70	—	4.1	0.003	0.79	0.0	0.04	15.54	0.01	2.534	12.17	6.45	2.4	97.6	0.0	1.63	0.52	0.50	0.71	—	2615	348	1	0	0	0	0	logfile
✔	9C4B	45180	2024-09-23	2024-06-03	3.4	3.78	3.57	3.7	0.004	0.73	1.0	0.05	16.50	0.00	1.827	10.64	0.89	5.9	93.3	0.8	-0.46	0.62	0.72	1.52	3.7	0.003	0.55	0.0	0.04	16.89	0.00	2.314	7.04	2.07	7.0	92.8	0.3	-0.53	0.54	0.62	0.72	1.61	6110	393	1	0	0	0	3030	logfile
✔	8PQV	17825	2024-09-30	2023-07-12	4.0	3.78	3.91	3.6	0.005	0.88	0.0	0.05	18.62	0.01	2.216	5.82	0.53	3.0	96.9	0.1	-1.33	0.83	0.80	—	3.6	0.003	0.58	0.0	0.04	18.57	0.00	2.508	8.53	2.63	2.8	97.1	0.1	1.81	1.11	0.83	0.80	—	24122	2996	1	0	0	0	0	logfile
✔	8U3F	41860	2024-09-23	2023-09-07	3.31	3.63	3.18	3.6	0.005	0.62	0.0	0.04	12.99	0.01	2.265	6.58	0.00	2.1	97.9	0.0	-1.54	0.57	0.87	2.88	3.6	0.004	0.59	0.0	0.04	14.61	0.00	2.565	6.72	2.49	2.6	97.4	0.0	1.86	0.35	0.56	0.87	2.35	3410	437	1	0	0	0	0	logfile
✔	8JGC	36230	2024-09-23	2023-05-20	3.44	3.77	3.05	3.8	0.008	1.05	0.0	0.07	15.17	0.01	2.251	23.58	4.35	9.0	90.0	1.0	-3.45	0.55	0.78	2.82	3.8	0.003	0.61	0.0	0.05	15.99	0.00	2.609	5.17	2.48	4.5	95.5	0.0	-0.08	1.31	0.54	0.79	2.63	1516	202	1	0	0	0	0	logfile
✔	8JWH	36683	2024-09-23	2023-06-29	3.34	2.70	3.24	3.4	0.004	0.84	0.0	0.05	19.18	0.01	2.135	16.08	0.76	4.7	95.3	0.0	-0.43	0.74	0.77	1.81	3.4	0.003	0.71	0.0	0.04	19.47	0.01	2.532	12.30	3.42	5.2	94.8	0.0	0.34	0.95	0.74	0.77	1.58	4870	597	1	0	0	0	0	logfile
✔	8P1K	17352	2024-09-26	2023-05-12	3.24	3.51	3.35	3.5	0.003	0.53	0.0	0.04	12.48	0.00	2.156	6.55	0.00	3.0	97.0	0.0	1.65	0.54	0.70	2.48	3.5	0.002	0.52	0.0	0.04	14.28	0.00	2.609	5.78	0.59	2.6	97.3	0.1	1.84	1.92	0.65	0.82	2.31	12261	1518	1	0	0	0	0	logfile
✔	9EoE	19852	2024-09-23	2024-03-14	2.3	2.15	2.26	2.2	0.009	1.54	2.0	0.10	14.88	0.01	2.621	4.14	4.41	8.0	92.0	0.0	-3.08	0.21	0.80	6.35	2.2	0.004	0.72	0.0	0.05	16.64	0.01	2.632	2.51	2.94	5.3	94.7	0.0	-1.85	1.25	0.27	0.83	7.06	595	77	1	0	0	0	0	logfile
✔	8UQ6	42462	2024-09-25	2023-10-23	3.6	5.71	2.81	39.0	0.016	2.36	10.0	0.13	16.35	0.02	2.502	1.87	5.96	23.5	71.6	4.9	-4.36	0.19	0.00	0.38	5.5	0.004	0.87	0.0	0.05	16.60	0.01	2.351	7.50	2.38	20.0	79.5	0.5	-3.96	2.37	0.22	0.15	0.07	11700	765	1	0	0	0	5689	logfile
✔	8XQ4	38565	2024-09-24	2024-01-04	3.21	2.33	3.21	3.1	0.003	0.74	0.0	0.05	12.52	0.01	2.267	3.69	3.90	4.0	96.0	0.0	-1.41	0.70	0.77	1.54	3.0	0.004	0.67	0.0	0.04	16.05	0.00	2.456	7.68	2.90	4.4	95.6	0.0	1.34	1.64	0.71	0.78	1.65	8237	1044	1	0	0	0	0	logfile
✔	8RF9	19116	2024-09-29	2023-12-12	3.28	3.88	3.54	3.8	0.003	0.70	0.0	0.04	14.24	0.00	2.070	10.54	0.14	9.5	89.4	1.1	-0.95	0.76	0.84	2.02	3.8	0.003	0.68	0.0	0.04	15.53	0.00	2.435	7.93	1.18	9.2	90.0	0.8	-0.70	1.34	0.73	0.83	1.91	20646	2642	1	0	0	0	0	logfile
✔	8SG4	40451	2024-09-26	2023-04-11	3.11	3.67	3.27	3.6	0.004	0.66	0.0	0.04	12.03	0.01	2.302	0.80	0.00	1.9	98.1	0.0	0.44	0.61	0.78	2.80	3.6	0.003	0.53	0.0	0.04	14.17	0.00	2.395	4.18	0.70	2.3	97.7	0.0	2.05	1.59	0.64	0.81	2.22	11715	1469	1	0	0	0	0	logfile
✔	8XW1	38727	2024-09-23	2024-01-15	4.49	4.73	4.24	4.6	0.005	0.82	0.0	0.05	14.01	0.01	2.139	20.22	0.19	7.2	92.8	0.0	-0.07	0.59	0.82	—	4.6	0.003	0.70	0.0	0.04	14.05	0.00	2.321	11.29	0.00	5.6	94.4	0.0	0.84	1.08	0.57	0.81	—	5082	634	1	0	0	0	0	logfile
✔	8Woi	37690	2024-09-25	2023-10-07	3.4	3.58	3.35	3.6	0.005	1.20	6.0	0.06	10.49	0.01	1.818	2.83	0.10	9.1	90.8	0.1	-6.42	0.68	0.83	3.78	3.6	0.003	0.67	0.0	0.04	13.85	0.00	2.444	3.96	1.42	7.5	92.5	0.0	-2.63	0.64	0.68	0.85	2.63	9324	1217	1	0	0	0	0	logfile
✔	8V85	43023	2024-09-23	2023-12-04	2.9	5.78	4.39	8.6	0.002	0.50	0.0	0.04	8.92	0.00	2.342	5.38	0.00	2.1	97.9	0.0	1.33	0.20	0.11	0.76	5.7	0.004	0.93	0.0	0.05	13.63	0.00	2.434	26.60	0.58	4.6	95.4	0.0	-1.13	4.15	0.34	0.27	1.13	1539	197	1	0	0	0	0	logfile
✔	8Wi4	37557	2024-09-25	2023-09-24	3.2	3.46	3.23	3.4	0.003	0.57	0.0	0.04	18.33	0.00	2.276	8.11	0.39	5.2	94.3	0.5	1.03	0.65	0.77	0.76	3.4	0.003	0.59	0.0	0.04	18.38	0.00	2.456	8.95	3.29	4.8	94.7	0.4	0.73	0.45	0.67	0.83	1.61	9443	1207	1	0	0	0	0	logfile

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