Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EDN	28037	2024-09-23	2022-09-05	3.8	3.47	3.75	3.3	0.002	0.58	0.0	0.04	11.31	0.00	2.205	6.81	0.46	5.7	94.1	0.2	2.77	0.65	0.60	0.13	3.3	0.003	0.63	0.0	0.04	13.94	0.00	2.509	7.58	1.84	4.3	95.5	0.2	2.35	1.13	0.70	0.72	1.96	3683	579	1	0	0	0	0	logfile
✔	8SC1	40334	2024-09-23	2023-04-04	2.92	3.14	2.89	3.2	0.003	0.68	0.0	0.04	10.47	0.01	2.266	1.15	0.00	2.5	97.5	0.0	-0.78	0.58	0.81	2.42	3.2	0.002	0.56	0.0	0.03	13.85	0.00	2.555	2.45	2.16	1.1	98.9	0.0	2.62	1.98	0.60	0.82	1.11	3447	446	1	0	0	0	0	logfile
✔	8PD2	17598	2024-09-24	2023-06-11	3.25	2.29	3.19	2.1	0.004	0.52	0.0	0.04	12.99	0.00	2.322	3.02	0.00	1.4	98.6	0.0	0.72	0.62	0.78	3.03	2.1	0.003	0.54	0.0	0.04	15.94	0.00	2.499	4.86	2.22	1.2	98.8	0.0	2.74	0.97	0.68	0.82	2.35	8270	1047	1	0	0	0	0	logfile
✔	8XoB	38525	2024-09-23	2023-12-31	3.15	3.40	3.18	3.4	0.005	0.80	0.0	0.04	12.87	0.01	2.358	3.44	0.00	4.2	95.8	0.0	-1.77	0.62	0.83	2.37	3.4	0.005	0.74	0.0	0.04	14.62	0.01	2.539	2.41	1.67	4.4	95.6	0.0	1.72	0.29	0.58	0.83	1.55	2858	387	1	0	0	0	0	logfile
✔	8JY5	36720	2024-09-26	2023-07-03	4.17	7.05	4.27	6.5	0.003	0.66	0.0	0.04	13.66	0.00	2.119	12.08	0.00	2.4	97.5	0.1	0.01	0.63	0.77	—	6.5	0.003	0.71	0.0	0.04	13.52	0.00	2.338	17.17	0.00	2.9	97.0	0.1	0.46	3.28	0.63	0.81	—	11511	1457	1	0	0	0	0	logfile
✔	8FTK	29439	2024-09-24	2023-01-12	4.56	5.56	4.86	4.4	0.002	0.58	0.0	0.04	4.66	0.00	2.125	4.21	0.00	5.9	94.1	0.0	0.74	0.85	0.81	—	4.4	0.002	0.54	0.0	0.04	4.64	0.00	2.329	1.93	0.00	8.3	91.7	0.0	0.47	1.25	0.86	0.82	—	7840	1584	1	0	0	0	0	logfile
✔	8JY4	36719	2024-09-29	2023-07-02	3.58	4.95	3.68	4.2	0.003	0.55	0.0	0.04	15.96	0.00	1.980	6.92	0.00	3.0	96.9	0.1	-0.52	0.62	0.78	0.68	4.2	0.003	0.65	0.0	0.04	16.20	0.00	2.242	10.02	2.20	3.4	96.5	0.1	0.91	0.84	0.62	0.80	0.53	22246	1383	1	0	0	0	11252	logfile
✔	8iZ8	35835	2024-09-25	2023-04-06	3.13	3.49	3.24	3.4	0.002	0.50	0.0	0.04	14.07	0.00	2.264	6.14	0.00	1.9	98.1	0.0	-0.97	0.55	0.71	0.44	3.4	0.003	0.59	0.0	0.04	16.36	0.00	2.567	7.55	1.77	2.8	97.2	0.0	1.49	1.23	0.60	0.82	1.41	9805	1230	1	0	0	0	0	logfile
✔	8U3D	41858	2024-09-23	2023-09-07	2.83	3.27	2.77	3.2	0.009	0.78	0.0	0.05	12.53	0.01	2.284	5.37	0.00	5.0	95.0	0.0	-2.36	0.56	0.87	3.83	3.2	0.003	0.60	0.0	0.04	14.59	0.01	2.555	5.07	1.99	3.3	96.7	0.0	1.58	0.91	0.52	0.86	3.08	3338	427	1	0	0	0	0	logfile
✔	8XW4	38730	2024-09-23	2024-01-15	3.84	4.08	3.72	4.0	0.006	0.87	0.0	0.05	14.64	0.00	1.751	14.90	0.00	10.8	89.2	0.0	-0.84	0.54	0.78	1.09	4.1	0.003	0.78	0.0	0.04	16.95	0.00	2.517	10.76	3.81	8.0	92.0	0.0	0.17	0.57	0.54	0.77	0.82	5027	619	1	0	0	0	0	logfile
✘	5X1G	6701	2024-09-23	2017-01-25	4.5	7.89	—	37.0	0.008	1.42	0.0	0.05	10.05	0.01	2.345	27.78	0.00	6.9	93.1	0.0	-2.75	0.00	0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	155	31	1	0	0	0	0	logfile
✔	8H4U	34484	2024-09-24	2022-10-11	3.5	3.38	3.50	3.4	0.002	0.59	0.0	0.04	18.36	0.00	2.218	8.59	1.28	5.1	94.9	0.0	0.05	0.75	0.82	1.33	3.4	0.003	0.60	0.0	0.04	18.61	0.00	2.447	7.77	2.56	5.6	94.4	0.0	1.75	1.01	0.74	0.81	0.55	7944	959	1	0	0	0	0	logfile
✔	8PD7	17602	2024-09-24	2023-06-11	3.4	2.32	3.31	2.1	0.003	0.59	0.0	0.04	12.69	0.00	2.276	3.44	0.11	1.5	98.5	0.0	1.39	0.62	0.78	2.65	2.1	0.004	0.54	0.0	0.04	15.49	0.00	2.598	4.71	2.04	2.2	97.8	0.0	2.28	0.99	0.69	0.81	2.13	8121	1028	1	0	0	0	0	logfile
✔	8V4N	42974	2024-09-23	2023-11-29	2.43	2.63	2.50	2.6	0.002	0.49	0.0	0.04	14.21	0.00	2.260	4.14	0.93	2.3	97.7	0.0	0.80	0.31	0.85	3.24	2.6	0.003	0.58	0.0	0.04	17.37	0.00	2.658	1.71	1.87	2.3	97.7	0.0	0.71	1.01	0.31	0.87	3.49	2067	263	1	0	0	0	0	logfile
✘	8QSN	18637	2024-09-23	2023-10-10	3.54	4.23	3.52	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3579	464	1	0	0	0	0	logfile
✔	8QCY	18337	2024-09-23	2023-08-28	2.9	3.36	3.07	3.3	0.004	0.58	0.0	0.04	11.88	0.00	2.245	5.86	0.00	1.4	98.6	0.0	0.40	0.55	0.78	3.99	3.3	0.003	0.64	0.0	0.04	15.55	0.00	2.550	6.91	2.27	1.9	98.1	0.0	2.18	1.25	0.48	0.73	2.90	3273	421	1	0	0	0	0	logfile
✔	8RF9	19116	2024-09-29	2023-12-12	3.28	3.88	3.54	3.8	0.003	0.70	0.0	0.04	14.24	0.00	2.070	10.54	0.14	9.5	89.4	1.1	-0.95	0.76	0.84	2.02	3.8	0.003	0.68	0.0	0.04	15.53	0.00	2.435	7.93	1.18	9.2	90.0	0.8	-0.70	1.34	0.73	0.83	1.91	20646	2642	1	0	0	0	0	logfile
✔	8SZ7	40902	2024-09-23	2023-05-27	2.84	3.08	2.87	3.6	0.003	0.46	0.0	0.04	9.67	0.00	2.393	1.99	0.00	0.9	99.1	0.0	1.11	0.17	0.20	2.22	3.2	0.003	0.62	0.0	0.04	12.99	0.00	2.516	3.73	1.36	1.3	98.7	0.0	2.29	1.13	0.44	0.67	0.78	4026	240	1	0	0	0	2021	logfile
✔	8UPY	42457	2024-09-23	2023-10-23	2.8	3.43	3.00	2.9	0.012	1.65	0.0	0.12	28.73	0.01	1.040	88.62	0.00	0.0	0.0	0.0	—	0.18	0.52	—	2.9	0.006	0.78	0.0	0.04	27.49	0.01	2.036	25.14	0.00	0.0	0.0	0.0	—	1.07	0.22	0.75	—	1532	0	1	72	0	0	0	logfile
✔	8JWH	36683	2024-09-23	2023-06-29	3.34	2.70	3.24	3.4	0.004	0.84	0.0	0.05	19.18	0.01	2.135	16.08	0.76	4.7	95.3	0.0	-0.43	0.74	0.77	1.81	3.4	0.003	0.71	0.0	0.04	19.47	0.01	2.532	12.30	3.42	5.2	94.8	0.0	0.34	0.95	0.74	0.77	1.58	4870	597	1	0	0	0	0	logfile

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