Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WC7	37433	2024-09-24	2023-09-11	3.1	3.32	3.11	3.3	0.004	0.60	1.0	0.04	13.83	0.00	2.237	4.93	0.80	4.5	95.5	0.0	-0.58	0.67	0.83	3.30	3.3	0.002	0.54	0.0	0.04	15.64	0.00	2.414	2.89	1.03	4.1	95.9	0.0	0.22	0.93	0.71	0.86	2.89	8532	1122	6	0	1	0	0	logfile
✔	8G9R	29874	2024-09-23	2023-02-21	3.28	3.68	2.90	44.0	0.003	0.59	0.0	0.05	16.84	0.01	2.542	2.24	0.00	5.7	94.3	0.0	-3.38	0.13	0.07	1.03	4.2	0.003	0.73	0.0	0.05	16.85	0.01	2.576	13.02	2.05	8.0	92.0	0.0	-3.77	2.57	0.26	0.34	2.06	3570	455	5	0	0	0	0	logfile
✔	7YFY	33801	2024-09-24	2022-07-09	3.4	3.81	3.42	3.8	0.005	0.86	1.0	0.05	19.54	0.01	1.918	6.81	1.35	5.5	94.4	0.1	-1.34	0.70	0.69	2.33	3.8	0.003	0.69	0.0	0.04	19.98	0.00	1.882	8.78	3.60	5.6	94.4	0.0	-0.88	0.57	0.72	0.75	1.85	6770	734	4	41	2	0	0	logfile
✔	8PHF	17660	2024-09-24	2023-06-19	3.6	3.88	3.58	4.0	0.004	0.65	0.0	0.04	16.42	0.00	2.134	11.77	0.11	4.6	95.4	0.0	0.67	0.67	0.71	1.88	4.0	0.002	0.53	0.0	0.04	17.11	0.00	2.570	7.38	1.52	2.4	97.6	0.0	1.75	0.53	0.65	0.70	1.48	8640	1094	4	0	2	0	0	logfile
✔	8TPN	41478	2024-09-24	2023-08-04	4.07	4.04	4.01	4.0	0.002	0.46	0.0	0.04	15.10	0.00	2.220	5.18	0.00	2.8	97.2	0.0	2.66	0.74	0.81	—	4.0	0.004	0.57	0.0	0.04	15.07	0.00	2.222	3.77	0.00	2.5	97.5	0.0	1.98	0.35	0.75	0.82	—	8612	1102	4	0	4	0	0	logfile
✔	8HZB	35087	2024-09-23	2023-01-08	3.2	3.13	2.70	3.3	0.008	0.92	0.0	0.06	16.62	0.00	2.162	16.73	0.00	10.3	89.7	0.0	-4.16	0.34	0.74	2.17	3.3	0.003	0.61	0.0	0.05	18.29	0.00	2.544	6.89	4.00	10.5	89.5	0.0	-2.74	0.47	0.33	0.73	2.17	2976	432	6	0	0	0	0	logfile
✔	8J8R	36078	2024-09-26	2023-05-02	2.9	3.08	2.99	3.1	0.004	0.64	0.0	0.04	15.50	0.00	2.199	6.24	2.26	4.0	96.0	0.0	0.97	0.73	0.82	3.14	3.1	0.003	0.59	0.0	0.04	15.93	0.00	2.499	4.66	4.12	4.2	95.8	0.0	0.73	0.29	0.73	0.83	3.07	13424	1733	12	0	0	0	0	logfile
✔	8J8Z	36082	2024-09-24	2023-05-02	3.4	3.65	3.51	3.7	0.006	0.73	0.0	0.05	14.13	0.00	2.118	7.54	0.86	6.7	93.3	0.0	-0.49	0.78	0.81	3.58	3.7	0.004	0.66	0.0	0.04	15.34	0.00	2.555	6.20	2.80	4.5	95.5	0.0	-0.06	0.41	0.78	0.81	2.46	8722	1142	8	0	0	0	0	logfile
✔	8XVX	38721	2024-09-25	2024-01-15	3.32	3.60	3.32	3.6	0.007	0.76	0.0	0.05	14.52	0.01	2.136	11.14	0.00	10.0	90.0	0.0	-0.50	0.66	0.81	2.26	3.5	0.003	0.62	0.0	0.04	16.47	0.01	2.572	5.97	2.23	7.8	92.2	0.0	0.63	0.36	0.64	0.80	1.27	11110	1392	2	0	0	0	0	logfile
✔	8oH2	16876	2024-09-23	2023-03-20	2.6	2.51	2.64	2.7	0.007	0.62	0.0	0.04	13.00	0.00	2.219	2.03	0.00	0.0	100.0	0.0	-3.19	0.48	0.86	6.37	2.6	0.002	0.53	0.0	0.05	17.80	0.00	2.248	1.22	2.31	0.0	100.0	0.0	-2.06	0.53	0.49	0.88	5.88	3702	468	102	0	72	30	0	logfile
✔	8SUB	40763	2024-09-26	2023-05-11	2.89	3.11	3.05	3.1	0.005	0.70	0.0	0.05	15.08	0.00	1.948	2.94	0.00	5.8	94.2	0.0	-1.48	0.71	0.84	3.31	3.2	0.002	0.55	0.0	0.04	17.01	0.00	1.989	2.83	1.20	3.8	96.2	0.0	-0.26	1.28	0.69	0.83	2.41	61226	7611	34	0	22	0	0	logfile
✔	8GDA	29944	2024-09-26	2023-03-03	3.3	2.59	3.24	3.3	0.007	0.69	0.0	0.05	13.62	0.00	2.207	5.13	0.41	4.0	96.0	0.0	-0.62	0.78	0.78	3.11	3.2	0.003	0.56	0.0	0.04	15.36	0.00	2.521	4.11	1.64	3.5	96.5	0.0	0.80	0.44	0.82	0.81	1.78	7650	1036	6	0	1	0	0	logfile
✔	8i4G	35172	2024-09-23	2023-01-19	3.68	2.81	3.67	3.8	0.002	0.63	0.0	0.04	10.19	0.00	2.246	6.82	5.71	9.0	91.0	0.0	-4.78	0.68	0.65	1.56	3.2	0.006	1.19	1.0	0.05	14.90	0.00	2.374	19.54	4.36	11.9	88.1	0.0	-3.43	1.84	0.70	0.68	1.67	6057	768	2	0	0	0	0	logfile
✔	8oE0	16821	2024-09-26	2023-03-10	4.6	5.72	4.72	5.1	0.005	0.93	0.0	0.06	15.09	0.01	2.199	11.71	0.37	3.7	96.3	0.0	-0.82	0.75	0.66	—	5.4	0.003	0.71	0.0	0.04	14.23	0.00	2.489	17.08	0.07	3.6	96.4	0.0	-0.81	1.67	0.77	0.70	—	11980	1500	8	0	8	0	0	logfile
✔	8QX9	18715	2024-09-23	2023-10-24	3.76	3.94	3.62	4.3	0.014	2.17	0.0	0.11	18.79	0.01	2.496	2.80	0.00	2.3	97.7	0.0	-4.75	0.50	0.70	3.13	4.3	0.004	0.93	0.0	0.04	19.90	0.00	2.530	16.78	2.59	3.5	96.5	0.0	-4.76	2.17	0.48	0.75	3.84	3696	540	12	0	0	0	0	logfile
✔	8HZN	35089	2024-09-25	2023-01-09	3.25	2.62	3.24	3.1	0.002	0.49	0.0	0.04	8.51	0.00	2.182	6.40	3.12	5.2	94.7	0.1	-3.99	0.78	0.77	2.37	3.0	0.004	0.72	0.0	0.04	14.36	0.00	2.426	12.37	3.48	6.6	93.3	0.1	-0.23	0.63	0.80	0.82	2.20	10200	1330	4	0	2	0	0	logfile
✔	8HWE	35055	2024-09-27	2022-12-29	3.3	3.47	3.28	3.5	0.003	0.61	0.0	0.04	17.84	0.00	1.956	10.09	0.62	8.5	91.5	0.0	-1.52	0.72	0.80	1.70	3.5	0.002	0.59	0.0	0.04	17.45	0.00	2.029	7.13	2.55	8.2	91.8	0.0	-0.92	0.30	0.71	0.80	1.46	17247	2112	12	0	11	0	0	logfile
✔	8JTT	36652	2024-09-23	2023-06-22	3.87	4.32	3.71	4.4	0.006	0.87	0.0	0.05	12.93	0.02	2.250	7.82	0.00	4.0	96.0	0.0	-2.01	0.51	0.57	0.20	4.4	0.003	0.68	0.0	0.04	15.58	0.00	2.623	8.28	2.46	4.0	96.0	0.0	0.21	1.16	0.52	0.60	-0.31	3321	454	2	0	1	0	0	logfile
✔	8BL8	16103	2024-09-26	2022-11-09	3.21	3.58	3.34	3.5	0.004	0.62	1.0	0.05	13.41	0.00	2.239	3.51	0.06	2.5	97.5	0.0	0.16	0.70	0.84	3.38	3.5	0.003	0.57	0.0	0.04	14.77	0.00	2.534	4.68	2.71	2.2	97.8	0.0	0.92	0.37	0.70	0.85	3.06	14019	1656	20	0	25	0	0	logfile
✔	8JYP	36729	2024-09-25	2023-07-03	3.38	4.15	3.49	3.8	0.003	0.62	0.0	0.05	14.64	0.00	2.291	5.18	0.00	2.5	97.5	0.0	0.39	0.84	0.84	2.35	3.8	0.003	0.57	0.0	0.04	13.37	0.00	2.538	4.71	1.00	2.8	97.2	0.0	1.13	1.06	0.84	0.85	2.37	6627	795	7	0	14	0	0	logfile

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