Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DE3	27383	2024-09-24	2022-06-19	3.3	3.58	3.29	3.6	0.008	0.69	0.0	0.05	17.06	0.00	2.178	8.58	0.16	3.0	97.0	0.0	0.95	0.59	0.72	1.11	3.6	0.004	0.59	0.0	0.04	16.44	0.00	2.216	9.71	4.81	4.5	95.5	0.0	0.44	0.38	0.61	0.78	1.23	6199	767	5	0	9	0	0	logfile
✔	8BPA	16147	2024-09-25	2022-11-16	3.7	2.50	3.80	1.6	0.005	0.85	0.0	0.05	18.50	0.01	2.127	18.60	0.97	4.0	96.0	0.0	0.00	0.69	0.65	0.97	1.6	0.003	0.75	0.0	0.04	19.15	0.01	2.049	12.00	4.24	3.7	96.3	0.0	0.39	1.21	0.69	0.66	1.00	10393	1280	6	0	7	0	0	logfile
✔	8CHB	16659	2024-09-24	2023-02-07	3.14	3.61	3.17	3.5	0.012	1.75	2.0	0.09	15.26	0.01	2.512	3.80	1.64	3.6	96.4	0.0	-1.52	0.72	0.77	2.69	3.5	0.004	0.67	0.0	0.04	16.43	0.00	2.555	5.95	2.04	2.6	97.4	0.0	2.14	2.23	0.74	0.80	1.62	8916	1158	2	0	0	0	0	logfile
✔	8K1S	36800	2024-09-29	2023-07-11	2.83	3.20	2.99	3.2	0.004	0.61	0.0	0.04	10.43	0.00	2.272	6.20	0.76	2.4	97.6	0.0	1.13	0.59	0.75	2.70	3.2	0.004	0.74	0.0	0.05	15.94	0.00	2.437	8.59	2.94	4.4	95.6	0.0	1.85	1.38	0.58	0.81	2.33	21000	2695	24	0	12	0	0	logfile
✔	8JMW	36428	2024-09-28	2023-06-05	2.9	3.38	2.87	3.1	0.007	0.64	0.0	0.05	15.80	0.01	2.204	9.12	0.00	5.7	94.3	0.0	-0.48	0.74	0.88	3.40	3.1	0.003	0.56	0.0	0.04	16.38	0.00	2.492	7.30	1.28	5.2	94.8	0.0	0.29	0.37	0.74	0.88	3.25	69552	9306	18	0	0	0	0	logfile
✔	8XoH	38529	2024-09-24	2024-01-01	3.2	3.06	3.20	3.2	0.003	0.56	0.0	0.04	15.16	0.00	2.215	4.05	0.21	2.6	97.4	0.0	0.74	0.60	0.81	3.13	3.2	0.003	0.61	0.0	0.04	16.50	0.00	2.467	6.51	2.71	2.2	97.8	0.0	0.91	1.21	0.56	0.80	2.14	8809	1116	5	0	0	0	0	logfile
✔	8FUV	29481	2024-09-25	2023-01-18	3.1	3.21	2.89	3.1	0.003	0.59	0.0	0.04	12.83	0.00	2.169	5.52	0.00	5.6	94.4	0.0	-0.17	0.36	0.86	3.59	3.1	0.005	0.65	0.0	0.05	14.35	0.01	2.457	5.62	2.03	5.5	94.1	0.4	-0.65	1.17	0.37	0.89	3.44	10170	1368	7	0	0	0	0	logfile
✔	8G3N	29705	2024-09-28	2023-02-08	2.9	3.49	2.87	3.2	0.016	1.76	0.0	0.09	14.52	0.01	2.302	0.08	0.00	4.9	94.9	0.2	-0.63	0.88	0.91	4.67	3.2	0.003	0.72	0.0	0.04	14.21	0.00	2.328	3.64	2.29	3.5	96.3	0.2	-0.31	0.56	0.85	0.88	3.58	20321	2512	39	0	81	0	0	logfile
✔	8KHR	37249	2024-09-26	2023-08-22	3.25	3.87	3.24	3.7	0.003	0.63	0.0	0.04	16.93	0.00	2.125	8.14	0.62	7.9	92.1	0.0	-1.23	0.81	0.78	2.40	3.7	0.007	0.73	0.0	0.04	17.06	0.00	2.542	8.70	3.71	12.1	87.9	0.0	-1.76	0.41	0.83	0.83	2.25	8320	1138	5	0	0	0	0	logfile
✔	8THR	41269	2024-09-23	2023-07-17	3.12	2.56	3.14	3.6	0.012	1.89	1.0	0.11	13.08	0.01	2.537	4.34	0.96	2.1	97.9	0.0	-3.14	0.77	0.75	2.62	3.6	0.003	0.89	0.0	0.05	15.21	0.01	2.415	12.70	3.51	4.2	95.8	0.0	-0.23	0.84	0.76	0.72	1.64	2937	389	2	0	1	0	0	logfile
✔	7L7H	23212	2024-09-23	2020-12-28	4.0	2.39	—	4.0	0.008	1.47	0.0	0.08	15.10	0.01	2.199	13.87	3.53	36.3	63.7	0.0	-6.00	0.47	0.60	—	4.0	0.004	0.93	0.0	0.06	17.13	0.00	2.551	15.88	11.76	26.8	73.2	0.0	-5.34	0.77	0.51	0.65	—	2430	352	8	0	0	0	0	logfile
✔	8BPC	16149	2024-09-24	2022-11-16	2.8	3.02	2.96	3.0	0.004	0.69	0.0	0.05	17.59	0.00	1.557	9.27	3.18	3.0	97.0	0.0	0.55	0.77	0.79	2.55	3.0	0.003	0.53	0.0	0.04	18.01	0.00	1.976	6.74	2.63	2.2	97.8	0.0	1.37	2.45	0.75	0.83	2.63	8433	1030	7	0	6	44	0	logfile
✔	8FVG	29486	2024-09-23	2023-01-18	3.1	2.34	3.16	3.2	0.004	0.66	0.0	0.05	14.20	0.00	2.106	8.55	0.00	5.7	94.3	0.0	-0.63	0.26	0.75	2.01	3.1	0.003	0.71	1.0	0.05	16.35	0.00	2.264	6.19	3.13	6.4	93.6	0.0	-0.63	1.36	0.26	0.78	2.11	48009	6409	13	0	0	0	0	logfile
✔	9GAW	13931	2024-09-27	2024-07-29	2.9	2.23	2.97	2.7	0.004	0.70	0.0	0.04	15.06	0.00	2.198	11.60	0.78	3.1	96.8	0.0	1.23	0.79	0.79	2.07	2.0	0.004	0.67	0.0	0.04	17.46	0.00	2.343	9.19	3.11	3.0	97.0	0.0	1.32	0.56	0.79	0.81	2.22	66640	8600	24	0	6	0	0	logfile
✔	8BPB	16148	2024-09-24	2022-11-16	2.8	2.48	3.00	2.8	0.004	0.61	0.0	0.04	17.77	0.00	1.755	8.92	2.96	2.5	97.5	0.0	0.64	0.74	0.80	2.51	2.8	0.002	0.53	0.0	0.04	18.11	0.00	1.990	6.03	3.07	2.4	97.6	0.0	1.58	1.07	0.72	0.80	2.30	8384	1030	7	0	6	12	0	logfile
✔	8FZ6	29604	2024-09-24	2023-01-27	2.54	2.71	2.58	2.7	0.002	0.43	0.0	0.04	15.52	0.00	2.199	5.23	1.26	1.4	98.6	0.0	1.88	0.80	0.90	3.97	2.7	0.006	0.62	0.0	0.05	17.07	0.01	2.484	5.87	2.05	1.9	98.1	0.0	1.52	0.93	0.80	0.91	3.87	49780	6404	30	0	0	0	0	logfile
✔	8oKA	16923	2024-09-29	2023-03-28	3.89	4.39	4.06	3.8	0.003	0.58	0.0	0.04	14.33	0.00	1.942	10.75	0.05	4.0	96.0	0.0	-0.26	0.84	0.79	1.29	3.8	0.003	0.58	0.0	0.04	14.95	0.00	2.360	7.27	0.67	4.7	95.3	0.0	0.03	0.36	0.84	0.79	1.33	74806	4662	12	0	6	0	37750	logfile
✔	8T03	40933	2024-09-24	2023-05-31	2.72	3.05	2.73	3.0	0.014	1.76	0.0	0.23	17.02	0.00	2.028	3.19	1.63	4.3	95.7	0.0	-0.46	0.44	0.74	4.16	3.0	0.003	0.58	0.0	0.04	16.12	0.00	2.489	4.56	1.23	2.7	97.3	0.0	1.99	0.96	0.60	0.86	3.45	6878	852	10	0	6	4	0	logfile
✔	8H9Q	34577	2024-09-26	2022-10-25	3.47	3.93	3.89	3.9	0.005	0.73	0.0	0.05	13.53	0.01	2.203	12.33	0.00	3.2	96.8	0.0	-3.02	0.62	0.80	2.13	3.9	0.006	0.97	1.0	0.04	16.62	0.01	1.794	15.30	3.59	1.5	98.5	0.0	1.72	1.34	0.64	0.82	1.50	12083	1596	19	0	0	0	0	logfile
✔	8EMX	28268	2024-09-29	2022-09-28	3.3	3.62	3.43	3.6	0.006	0.81	0.0	0.05	15.14	0.01	2.263	4.73	0.00	5.0	95.0	0.0	-4.74	0.73	0.83	2.54	3.7	0.004	0.65	0.0	0.04	16.66	0.00	2.333	6.93	2.77	4.6	95.4	0.0	-2.49	0.40	0.75	0.87	1.83	11714	1506	6	0	1	0	0	logfile

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