Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K79	22697	2024-09-26	2020-09-22	4.0	4.46	—	4.1	0.009	1.81	2.0	0.08	17.45	0.01	2.197	11.21	0.13	9.6	90.4	0.0	-3.78	0.79	0.74	—	4.0	0.003	0.76	0.0	0.04	18.08	0.00	2.504	12.47	3.78	6.9	93.1	0.0	-1.17	2.43	0.79	0.73	—	13272	1601	4	0	0	0	0	logfile
✔	7TUZ	26136	2024-09-25	2022-02-03	3.12	3.73	—	3.6	0.011	0.73	0.0	0.07	12.68	0.01	2.161	6.74	0.10	3.5	96.5	0.0	-2.23	0.73	0.86	3.03	3.6	0.004	0.64	0.0	0.04	14.95	0.00	2.516	7.03	2.39	3.4	96.6	0.0	0.38	0.59	0.70	0.83	2.72	8910	1141	6	0	1	0	0	logfile
✔	7RHL	24465	2024-09-27	2021-07-17	3.03	2.43	—	2.7	0.003	0.56	0.0	0.04	13.97	0.00	2.217	5.43	0.00	1.5	98.5	0.0	1.66	0.63	0.84	3.54	2.7	0.003	0.50	0.0	0.04	15.05	0.00	2.587	7.89	0.74	1.3	98.7	0.0	2.60	0.36	0.64	0.86	3.54	15371	1932	4	0	0	0	0	logfile
✔	8E3X	27872	2024-09-24	2022-08-17	2.3	3.02	2.29	2.8	0.003	0.58	0.0	0.04	13.02	0.00	2.239	5.84	0.00	2.1	97.9	0.0	1.49	0.70	0.82	3.16	2.8	0.004	0.58	0.0	0.04	15.30	0.00	2.444	4.53	0.32	2.3	97.7	0.0	1.50	0.96	0.75	0.89	3.64	8979	1140	8	0	0	11	0	logfile
✔	6X3E	22020	2024-09-25	2020-05-21	3.42	3.51	—	3.5	0.006	0.90	0.0	0.06	14.42	0.01	2.083	3.23	0.00	2.9	97.1	0.0	-6.06	0.60	0.87	2.34	3.5	0.003	0.69	0.0	0.04	16.22	0.00	2.197	6.56	2.88	2.3	97.7	0.0	0.88	0.64	0.61	0.89	1.47	9469	1242	5	0	3	0	0	logfile
✔	7Y76	33653	2024-09-30	2022-06-21	3.2	3.58	3.10	3.3	0.010	0.84	0.0	0.05	16.48	0.00	1.996	13.47	5.15	8.8	90.8	0.3	-3.40	0.74	0.84	2.10	3.3	0.003	0.66	0.0	0.04	15.95	0.00	2.083	6.09	2.08	6.5	93.5	0.1	-0.05	0.44	0.74	0.87	1.52	25180	3042	26	0	46	0	0	logfile
✔	7DXD	30905	2024-09-29	2021-01-18	3.9	4.20	3.85	3.9	0.004	0.63	0.0	0.04	13.51	0.00	2.260	7.65	1.25	2.8	97.2	0.0	-0.82	0.74	0.82	1.28	3.9	0.003	0.57	0.0	0.04	15.43	0.00	2.383	7.44	1.21	3.3	96.7	0.0	2.56	1.30	0.74	0.84	1.16	23628	2928	8	0	12	0	0	logfile
✔	6QVB	4646	2024-09-25	2019-03-01	4.34	5.06	4.26	4.4	0.010	1.72	8.0	0.09	12.75	0.01	2.153	12.31	3.10	10.3	89.5	0.2	-4.45	0.67	0.75	—	4.4	0.003	0.93	0.0	0.05	12.38	0.00	2.365	16.84	0.00	8.1	91.8	0.1	-0.39	0.88	0.67	0.75	—	9237	1193	2	0	0	0	0	logfile
✔	6QVU	4657	2024-09-25	2019-03-05	4.2	6.05	4.20	6.9	0.006	1.31	0.0	0.06	12.34	0.01	2.191	10.73	1.99	9.3	90.7	0.0	-4.21	0.65	0.75	—	7.0	0.003	0.87	0.0	0.05	11.46	0.01	2.347	15.98	0.00	7.6	92.4	0.0	-0.45	1.38	0.66	0.76	—	9272	1198	2	0	0	0	0	logfile
✔	6Y97	10733	2024-09-23	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.17	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.003	0.70	0.0	0.04	13.29	0.00	2.557	12.52	0.00	6.7	93.3	0.0	0.59	0.85	0.71	0.72	—	4366	564	4	0	0	0	0	logfile
✔	8H10	34420	2024-09-30	2022-09-30	2.99	3.22	3.06	3.2	0.008	0.90	0.0	0.05	12.96	0.01	2.304	2.85	0.64	3.1	96.9	0.0	-1.07	0.81	0.85	2.83	3.2	0.004	0.61	0.0	0.05	14.26	0.00	2.490	3.73	2.25	3.5	96.5	0.0	-0.15	0.43	0.82	0.87	3.05	24882	3078	9	0	54	0	0	logfile
✔	7WCM	32424	2024-09-24	2021-12-20	2.33	2.14	—	2.2	0.003	0.61	0.0	0.04	14.07	0.00	2.281	3.66	0.00	2.5	97.5	0.0	1.05	0.64	0.84	4.03	2.2	0.003	0.62	0.0	0.04	16.20	0.00	2.549	3.36	1.69	2.4	97.6	0.0	1.47	0.32	0.64	0.88	4.11	8232	1047	6	0	1	0	0	logfile
✔	6QVC	4647	2024-09-25	2019-03-01	4.0	4.37	3.88	4.1	0.008	1.47	0.0	0.08	11.98	0.01	2.232	8.97	2.19	8.4	91.1	0.5	-3.90	0.67	0.81	—	4.1	0.004	1.05	0.0	0.05	14.46	0.00	2.535	16.20	2.78	6.3	93.7	0.0	0.43	1.36	0.68	0.81	—	9272	1198	2	0	0	0	0	logfile
✔	7WiH	32530	2024-09-25	2022-01-03	3.68	4.13	—	4.1	0.006	1.03	0.0	0.06	14.90	0.01	2.024	5.51	0.73	10.8	88.9	0.3	-6.08	0.77	0.78	2.12	4.1	0.003	0.71	0.0	0.04	14.83	0.00	2.604	4.15	3.41	10.6	89.4	0.0	-3.22	0.48	0.75	0.77	1.72	10002	1482	4	0	4	0	0	logfile
✔	7UZU	26918	2024-09-24	2022-05-09	2.3	2.23	2.31	2.2	0.003	0.57	0.0	0.04	17.47	0.01	2.124	3.14	0.52	3.1	96.9	0.0	1.73	0.60	0.87	5.53	2.2	0.003	0.50	0.0	0.04	17.61	0.00	2.409	2.73	0.78	3.8	96.2	0.0	2.45	0.19	0.59	0.87	5.46	7399	483	4	0	0	79	3655	logfile
✔	6C24	7335	2024-09-26	2018-01-06	3.5	3.56	3.57	3.5	0.017	1.56	2.0	0.09	12.28	0.01	1.246	14.34	1.75	15.6	82.9	1.5	-4.74	0.75	0.83	2.89	3.5	0.005	0.83	0.0	0.05	15.30	0.00	2.423	13.00	3.34	9.9	89.9	0.1	-2.41	0.83	0.73	0.79	1.98	13346	1637	12	0	135	0	0	logfile
✔	5V8L	8643	2024-09-29	2017-03-22	4.3	4.43	4.15	4.3	0.015	1.85	1.0	0.12	14.73	0.01	1.786	7.02	0.39	1.7	98.1	0.2	2.30	0.72	0.73	—	4.3	0.005	0.83	0.0	0.05	12.51	0.00	2.355	12.34	0.00	4.2	95.8	0.0	-0.06	1.02	0.74	0.79	—	22934	2635	63	0	157	0	0	logfile
✔	7o10	12685	2024-09-26	2021-03-28	3.6	4.08	—	3.8	0.006	1.09	2.0	0.06	14.56	0.01	1.946	4.80	1.06	7.0	93.0	0.0	-5.64	0.78	0.82	1.71	3.8	0.003	0.68	0.0	0.04	15.82	0.00	2.017	9.65	1.96	5.2	94.8	0.0	-0.31	1.16	0.78	0.82	1.16	11651	1514	6	0	1	1	0	logfile
✔	7o11	12686	2024-09-26	2021-03-28	3.7	4.17	—	3.8	0.006	1.11	1.0	0.06	14.72	0.01	1.960	5.69	0.74	6.1	93.9	0.0	-5.78	0.79	0.82	1.84	3.8	0.004	0.72	0.0	0.04	15.87	0.00	1.967	9.52	2.29	6.3	93.7	0.0	-0.60	0.55	0.80	0.83	1.48	11651	1514	6	0	1	1	0	logfile
✘	7RJE	24486	2024-09-25	2021-07-20	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57232	3818	24	0	10	0	27924	logfile

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