Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SNM	40629	2024-09-24	2023-04-27	3.84	4.11	3.83	4.0	0.004	0.74	0.0	0.05	13.05	0.01	2.183	11.42	0.00	5.6	94.4	0.0	-0.67	0.68	0.78	2.04	4.0	0.003	0.67	0.0	0.04	16.06	0.00	2.254	8.48	1.92	5.0	95.0	0.0	0.11	0.98	0.71	0.82	0.96	8986	1134	4	0	2	0	0	logfile
✔	8Jo3	36454	2024-09-23	2023-06-07	2.66	2.82	2.65	2.8	0.003	0.53	0.0	0.04	18.82	0.00	2.196	9.66	2.56	1.4	98.6	0.0	1.75	0.70	0.82	3.43	2.8	0.004	0.56	0.0	0.04	18.55	0.00	2.337	7.12	3.04	1.6	98.4	0.0	1.69	0.24	0.70	0.82	3.67	5715	709	4	0	3	0	0	logfile
✔	8PTN	17875	2024-09-29	2023-07-14	3.3	3.95	3.35	3.6	0.003	0.71	0.0	0.04	15.97	0.00	2.077	13.07	0.48	1.7	98.2	0.0	0.48	0.89	0.82	1.32	3.6	0.004	0.86	1.0	0.05	16.68	0.00	2.102	13.56	2.18	2.6	97.3	0.0	0.36	0.40	0.89	0.85	1.04	22976	2918	11	0	0	0	0	logfile
✔	8P2E	17362	2024-09-26	2023-05-16	3.2	4.02	3.24	3.7	0.018	1.79	0.0	0.09	10.29	0.01	1.972	5.06	0.14	1.9	97.7	0.4	1.22	0.82	0.72	1.85	3.7	0.004	0.81	0.0	0.04	14.81	0.01	2.514	13.45	2.85	3.8	96.2	0.0	0.12	2.00	0.83	0.75	2.21	12786	1691	8	0	0	0	0	logfile
✔	8TSi	41593	2024-09-28	2023-08-11	4.4	4.04	3.79	4.0	0.004	1.20	0.0	0.05	17.52	0.00	2.225	8.10	0.68	3.9	96.1	0.0	0.86	0.63	0.75	—	4.0	0.003	0.66	0.0	0.04	14.80	0.00	2.466	7.59	0.00	3.3	96.7	0.0	1.26	3.46	0.65	0.77	—	20248	2488	14	0	4	0	0	logfile
✔	8Y91	39066	2024-09-24	2024-02-06	3.13	3.47	3.24	3.4	0.004	0.55	0.0	0.04	11.48	0.00	1.938	9.24	5.04	4.4	95.6	0.0	-1.65	0.48	0.65	1.57	3.4	0.004	0.67	0.0	0.04	15.03	0.00	2.228	7.52	3.78	4.6	95.4	0.0	0.81	1.46	0.65	0.82	2.33	9072	1130	4	0	6	0	0	logfile
✔	8RC6	19049	2024-09-26	2023-12-06	3.3	2.08	3.27	3.4	0.005	0.59	0.0	0.04	12.31	0.00	1.989	6.15	0.58	1.4	98.4	0.1	-1.45	0.77	0.77	3.60	3.4	0.004	0.60	0.0	0.04	15.83	0.00	2.375	6.81	2.47	5.5	94.4	0.1	-0.70	0.66	0.76	0.77	3.05	12194	780	6	0	0	0	6076	logfile
✔	8UPX	42456	2024-09-29	2023-10-23	3.4	4.02	3.51	3.8	0.004	0.66	0.0	0.05	18.28	0.00	2.118	7.65	0.20	6.6	93.3	0.1	-0.97	0.83	0.81	2.09	3.8	0.005	0.69	0.0	0.05	15.95	0.00	2.454	6.02	1.05	7.0	93.0	0.0	-0.60	0.37	0.83	0.84	2.16	23232	2904	18	0	38	0	0	logfile
✔	8Wi3	37556	2024-09-25	2023-09-24	3.38	3.85	3.53	3.8	0.004	0.68	0.0	0.04	17.11	0.00	2.187	6.04	0.38	6.6	93.3	0.1	1.08	0.63	0.76	0.50	3.8	0.003	0.57	0.0	0.04	17.57	0.00	2.525	4.22	2.40	6.5	93.3	0.2	1.56	0.36	0.64	0.74	0.58	9489	1208	1	0	0	0	0	logfile
✔	9ARi	43783	2024-09-29	2024-02-23	3.9	4.18	4.02	4.1	0.007	1.12	45.0	0.07	10.71	0.01	1.816	12.63	9.33	6.9	92.9	0.3	-3.31	0.70	0.72	1.20	4.1	0.004	0.70	0.0	0.04	12.76	0.00	2.439	7.07	5.87	8.4	91.6	0.0	-1.04	1.23	0.70	0.72	1.23	20756	3178	6	0	0	0	0	logfile
✔	8Jo4	36455	2024-09-23	2023-06-07	3.04	3.24	3.06	3.2	0.004	0.59	0.0	0.05	13.29	0.00	2.202	9.05	3.21	2.0	97.9	0.1	1.06	0.71	0.78	3.68	3.2	0.003	0.54	0.0	0.04	15.91	0.00	2.396	8.96	1.93	1.8	98.2	0.0	1.77	0.48	0.69	0.77	3.21	5719	709	4	0	4	0	0	logfile
✔	8RoZ	19408	2024-09-23	2024-01-12	2.7	2.95	2.73	3.0	0.005	0.56	0.0	0.04	17.46	0.00	1.656	5.09	1.06	1.9	98.1	0.0	1.04	0.64	0.85	2.73	3.0	0.003	0.50	0.0	0.04	18.07	0.00	2.594	3.94	3.03	1.5	98.5	0.0	1.62	0.90	0.69	0.87	2.75	6079	751	3	0	0	0	0	logfile
✔	8RHZ	19179	2024-09-27	2023-12-17	3.37	2.52	3.41	2.2	0.007	0.62	0.0	0.04	12.49	0.00	1.789	4.92	0.12	6.5	93.5	0.0	-1.29	0.76	0.78	2.52	2.2	0.003	0.53	0.0	0.04	13.23	0.00	2.077	3.03	1.67	3.0	97.0	0.0	3.48	0.91	0.76	0.78	2.01	15223	2439	6	0	6	0	0	logfile
✔	8VZo	43684	2024-09-23	2024-02-12	2.49	2.66	2.50	2.7	0.013	1.82	1.0	0.10	14.97	0.03	2.347	6.25	3.67	4.0	96.0	0.0	-2.36	0.56	0.81	3.92	2.6	0.005	0.64	0.0	0.05	15.30	0.01	2.597	5.00	1.54	2.6	97.4	0.0	1.92	0.50	0.67	0.89	4.03	4796	615	4	0	1	0	0	logfile
✔	8YZ6	39686	2024-09-30	2024-04-06	4.55	4.63	4.46	4.6	0.004	0.67	0.0	0.05	13.46	0.01	1.194	18.91	0.36	3.8	96.0	0.2	-0.97	0.50	0.60	—	4.5	0.003	0.64	0.0	0.04	13.37	0.00	2.368	11.55	0.00	4.5	95.5	0.1	-1.05	1.00	0.50	0.61	—	24972	3161	13	0	18	0	0	logfile
✔	8WJG	37579	2024-09-23	2023-09-25	3.0	3.18	2.87	3.3	0.005	1.21	0.0	0.06	15.28	0.01	2.211	6.71	2.03	2.6	97.4	0.0	0.84	0.51	0.73	1.85	3.3	0.003	0.70	0.0	0.04	16.31	0.00	2.591	9.11	2.03	2.1	97.9	0.0	1.85	0.44	0.50	0.74	2.39	3952	533	1	0	0	0	0	logfile
✔	8UH3	42245	2024-09-24	2023-10-06	3.31	3.52	3.29	3.5	0.003	0.57	0.0	0.04	14.49	0.00	2.196	10.84	0.11	2.7	97.3	0.0	0.42	0.68	0.79	2.84	3.5	0.004	0.62	0.0	0.04	15.82	0.00	2.503	8.90	2.75	2.9	97.1	0.0	0.44	2.19	0.68	0.83	2.41	8759	1098	7	0	5	1	0	logfile
✔	8THD	41254	2024-09-28	2023-07-14	3.25	3.59	3.41	3.6	0.003	0.65	0.0	0.04	16.15	0.00	2.107	8.30	0.43	3.3	96.7	0.0	0.17	0.70	0.80	1.27	3.5	0.003	0.62	0.0	0.04	17.28	0.00	1.990	8.72	3.00	3.1	96.9	0.0	0.81	1.99	0.72	0.85	1.55	20396	2553	13	0	8	0	0	logfile
✔	8QH5	18398	2024-09-29	2023-09-06	3.4	2.50	—	3.1	0.005	0.83	0.0	0.05	14.69	0.02	2.035	10.00	0.34	5.1	94.9	0.0	-1.33	0.66	0.64	2.03	2.2	0.004	0.61	0.0	0.04	15.66	0.00	2.251	16.11	1.68	4.3	95.7	0.0	-0.50	0.75	0.72	0.76	2.69	22744	1687	4	0	0	0	9435	logfile
✔	8VRW	43488	2024-09-25	2024-01-22	3.03	2.28	3.04	2.1	0.004	0.60	0.0	0.05	10.40	0.02	2.030	18.92	0.52	4.3	95.7	0.0	-1.34	0.67	0.64	2.23	1.5	0.003	0.66	0.0	0.04	13.86	0.01	2.384	11.75	2.52	4.1	95.9	0.0	-0.83	1.14	0.67	0.67	2.26	10413	1272	9	0	0	0	0	logfile

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