Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DSP	27657	2024-09-24	2022-07-22	3.3	3.95	3.29	3.7	0.005	0.79	0.0	0.05	12.78	0.00	2.147	13.79	0.47	8.9	90.5	0.6	-1.65	0.69	0.65	0.69	3.7	0.004	0.63	0.0	0.04	15.32	0.00	2.171	11.21	1.65	10.3	89.3	0.4	-1.38	2.23	0.74	0.81	2.59	7745	490	3	0	0	0	3848	logfile
✔	8HRM	34978	2024-09-23	2022-12-15	2.56	2.74	2.64	3.1	0.005	0.82	0.0	0.05	15.72	0.00	2.138	18.48	4.07	6.0	93.2	0.9	-1.82	0.70	0.79	4.89	3.1	0.007	0.88	0.0	0.05	15.88	0.00	2.555	9.46	4.36	4.9	95.1	0.0	-1.98	0.77	0.69	0.79	4.98	3567	476	8	0	0	19	0	logfile
✔	8WX2	37898	2024-09-24	2023-10-27	3.44	3.85	3.44	3.7	0.002	0.65	0.0	0.04	14.51	0.01	2.033	8.01	1.99	6.5	93.0	0.5	-2.25	0.56	0.68	0.73	3.7	0.004	0.85	0.0	0.05	16.35	0.01	2.531	11.43	2.99	7.6	92.4	0.0	0.95	0.63	0.59	0.74	0.53	6800	880	2	0	0	0	0	logfile
✘	7XFJ	33174	2024-09-26	2022-04-01	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12805	943	11	262	0	0	0	logfile
✔	7YNG	33961	2024-09-23	2022-07-30	3.1	3.08	2.33	3.4	0.009	0.85	0.0	0.06	13.71	0.00	2.192	9.66	0.00	10.4	89.6	0.0	-4.25	0.36	0.76	3.68	3.4	0.002	0.49	0.0	0.05	14.82	0.00	2.483	2.60	0.37	3.0	97.0	0.0	-2.05	0.39	0.35	0.75	3.65	2628	378	6	0	0	0	0	logfile
✔	9F42	50181	2024-09-24	2024-04-26	3.27	3.49	3.23	3.5	0.002	0.48	0.0	0.04	12.23	0.00	2.189	6.92	1.81	3.0	97.0	0.0	0.35	0.59	0.74	2.02	3.5	0.003	0.58	0.0	0.04	15.14	0.00	2.580	10.58	3.20	3.9	96.1	0.0	0.07	1.42	0.55	0.74	2.15	8465	1061	2	0	0	0	0	logfile
✔	8UoP	42435	2024-09-26	2023-10-20	3.8	3.97	3.89	3.8	0.005	0.91	0.0	0.04	16.45	0.01	1.954	17.97	0.73	15.7	83.6	0.7	-3.60	0.18	0.15	0.40	3.9	0.003	0.65	0.0	0.04	17.06	0.00	2.263	11.38	3.37	12.6	87.1	0.3	-3.11	0.92	0.24	0.23	0.07	13188	872	2	0	0	0	6544	logfile
✔	8JLD	36393	2024-09-25	2023-06-02	2.48	2.34	2.40	2.8	0.004	0.71	0.0	0.04	29.74	0.01	1.941	4.35	0.32	1.4	98.6	0.0	0.65	0.78	0.87	3.08	2.7	0.004	0.60	0.0	0.03	28.29	0.00	2.194	4.45	2.92	1.5	98.5	0.0	3.17	0.34	0.78	0.88	2.47	11844	746	10	290	0	0	0	logfile
✔	8JY5	36720	2024-09-26	2023-07-03	4.17	7.05	4.27	6.5	0.003	0.66	0.0	0.04	13.66	0.00	2.119	12.08	0.00	2.4	97.5	0.1	0.01	0.63	0.77	—	6.5	0.003	0.71	0.0	0.04	13.52	0.00	2.338	17.17	0.00	2.9	97.0	0.1	0.46	3.28	0.63	0.81	—	11511	1457	1	0	0	0	0	logfile
✘	8SQA	40700	2024-09-26	2023-05-04	4.2	4.55	4.26	4.3	0.007	0.81	0.0	0.05	14.35	0.00	2.058	26.55	0.39	18.8	81.2	0.1	-5.75	0.78	0.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12156	1563	6	0	0	0	0	logfile
✔	8TEM	41191	2024-09-24	2023-07-06	3.02	2.66	2.92	3.0	0.003	0.56	0.0	0.04	17.16	0.00	2.092	3.52	1.87	3.6	96.4	0.0	1.84	0.59	0.82	2.19	3.0	0.003	0.57	0.0	0.04	17.06	0.00	2.409	3.40	2.11	2.2	97.8	0.0	2.58	0.50	0.61	0.84	1.97	7992	1010	2	0	0	0	0	logfile
✔	8BEi	16004	2024-09-27	2022-10-21	3.06	3.11	3.01	3.2	0.003	0.55	0.0	0.04	16.06	0.01	2.240	5.95	1.38	2.9	97.1	0.0	1.04	0.70	0.83	2.57	3.2	0.003	0.56	0.0	0.04	16.37	0.00	2.608	4.65	2.99	2.9	97.1	0.0	1.21	0.38	0.65	0.83	2.15	16578	2100	6	0	0	0	0	logfile
✔	9C0C	45079	2024-09-25	2024-05-25	3.41	3.58	3.44	3.5	0.003	0.58	0.0	0.04	14.86	0.00	2.206	8.91	0.58	2.1	97.9	0.0	1.80	0.69	0.73	1.56	3.5	0.002	0.53	0.0	0.04	16.09	0.00	2.502	6.59	1.96	1.5	98.5	0.0	1.90	1.24	0.83	0.87	1.51	53970	7336	14	0	0	0	0	logfile
✔	8oL6	16952	2024-09-23	2023-03-30	3.8	3.75	2.68	3.8	0.004	0.56	0.0	0.05	9.68	0.00	2.255	9.57	0.00	3.4	96.6	0.0	-2.28	0.46	0.86	5.96	3.8	0.004	0.62	0.0	0.05	16.26	0.00	2.567	10.43	9.57	5.9	93.4	0.7	-2.62	1.12	0.45	0.86	4.71	2260	310	10	0	0	0	0	logfile
✔	8P3V	17396	2024-09-27	2023-05-18	3.53	3.91	3.30	3.6	0.011	1.33	3.0	0.10	15.53	0.01	2.259	11.55	5.25	2.9	96.6	0.6	0.15	0.62	0.70	2.12	3.6	0.004	0.65	0.0	0.04	15.52	0.00	2.513	9.72	2.80	1.5	98.5	0.0	2.34	0.68	0.68	0.83	2.15	16914	2247	8	0	0	0	0	logfile
✔	8U2C	41845	2024-09-27	2023-09-05	2.5	2.75	2.49	2.9	0.012	1.88	5.0	0.10	13.83	0.02	2.543	0.27	1.85	4.1	95.6	0.3	-1.26	0.75	0.80	3.98	2.9	0.003	0.73	0.0	0.04	16.40	0.00	2.398	6.68	3.17	3.1	96.8	0.1	0.78	0.69	0.75	0.83	2.46	15042	1948	10	0	0	0	0	logfile
✔	8CEC	16605	2024-09-24	2023-02-01	3.57	2.84	3.39	2.8	0.010	1.58	12.0	0.11	23.40	0.02	2.182	8.39	4.35	6.1	93.2	0.7	-3.58	0.74	0.71	2.10	2.7	0.003	0.67	0.0	0.04	23.54	0.00	2.144	11.26	2.91	3.8	96.0	0.2	-0.35	1.15	0.70	0.65	1.79	51964	2928	22	1340	0	0	0	logfile
✔	8SFJ	40443	2024-09-25	2023-04-11	3.6	4.77	3.67	4.0	0.005	1.19	0.0	0.07	22.09	0.01	2.182	7.41	0.22	2.3	97.7	0.0	-0.53	0.87	0.72	1.68	4.0	0.003	0.66	0.0	0.04	22.33	0.00	2.493	9.98	2.02	2.6	97.4	0.0	0.92	0.98	0.92	0.86	1.80	10207	1001	4	97	0	0	0	logfile
✔	8Q85	18247	2024-09-25	2023-08-17	3.97	4.11	3.83	3.9	0.004	0.92	0.0	0.05	17.20	0.01	2.146	18.47	0.53	2.9	97.1	0.0	1.93	0.61	0.75	0.67	3.9	0.005	1.06	1.0	0.05	17.37	0.00	2.286	18.22	3.47	2.3	97.7	0.1	3.45	1.18	0.61	0.74	0.79	10299	1436	12	0	0	0	0	logfile
✔	8CPE	16780	2024-09-23	2023-03-02	4.0	3.90	2.90	4.2	0.002	0.93	0.0	0.06	12.17	0.00	2.224	3.26	0.00	4.1	95.9	0.0	-3.80	0.54	0.71	—	4.3	0.002	0.67	0.0	0.05	14.31	0.00	2.400	5.26	1.21	10.1	89.9	0.0	-4.61	1.51	0.52	0.70	—	5520	385	5	0	0	0	2615	logfile

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