Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PZT	20537	2024-09-23	2019-08-01	3.46	3.91	3.76	3.8	0.007	0.75	0.0	0.05	11.59	0.00	2.026	16.50	0.43	12.3	87.7	0.0	-3.13	0.59	0.76	3.32	3.8	0.003	0.70	0.0	0.04	13.41	0.00	2.524	7.54	5.15	8.3	91.7	0.0	0.35	1.19	0.63	0.80	1.98	6062	932	2	0	0	0	0	logfile
✔	8D45	27175	2024-09-29	2022-06-01	2.62	2.70	2.64	2.9	0.004	0.79	0.0	0.04	17.51	0.01	2.203	4.67	0.92	5.2	94.8	0.0	-1.43	0.62	0.71	3.11	2.9	0.004	0.65	0.0	0.04	17.52	0.01	2.187	6.10	1.74	5.8	94.2	0.0	-0.33	0.41	0.62	0.73	3.04	20932	1358	4	0	0	0	10370	logfile
✔	6W7M	21571	2024-09-23	2020-03-19	3.8	3.72	—	3.6	0.002	0.58	0.0	0.03	23.74	0.00	2.031	14.77	0.10	7.4	92.3	0.3	-3.67	0.68	0.56	0.12	3.6	0.004	0.79	0.0	0.04	24.19	0.01	2.030	19.50	3.70	11.1	88.7	0.2	-2.68	1.34	0.71	0.61	0.50	50694	2319	20	1512	0	0	0	logfile
✔	6X29	21997	2024-09-29	2020-05-20	2.7	3.22	2.83	3.1	0.009	0.87	0.0	0.06	8.82	0.01	2.008	3.88	0.12	5.8	94.2	0.0	-4.56	0.54	0.58	3.11	3.1	0.004	0.66	0.0	0.05	13.23	0.00	2.414	7.58	1.56	3.9	96.1	0.0	-0.58	0.70	0.74	0.83	3.33	22806	2916	3	0	0	0	0	logfile
✔	7TLA	25985	2024-09-29	2022-01-18	3.13	3.36	—	3.3	0.012	1.76	3.0	0.09	13.37	0.01	2.522	0.09	1.12	6.0	93.7	0.3	-1.09	0.58	0.61	4.05	3.3	0.003	0.61	0.0	0.04	14.84	0.00	2.552	4.54	1.55	3.3	96.7	0.0	0.19	0.59	0.75	0.85	3.15	23052	2948	3	0	0	0	0	logfile
✘	7VX1	32167	2024-09-30	2021-11-12	3.5	2.44	—	3.4	0.002	0.49	1.0	0.04	7.46	0.00	1.753	8.22	0.00	4.3	95.7	0.1	-2.11	0.63	0.59	1.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25362	3237	3	0	0	0	0	logfile
✔	8CSA	26961	2024-09-29	2022-05-12	3.84	4.24	3.87	3.9	0.012	1.75	3.0	0.09	13.74	0.02	2.527	0.19	1.18	6.0	93.8	0.2	-1.46	0.82	0.78	0.63	3.9	0.004	0.67	0.0	0.04	14.95	0.00	2.359	9.36	1.98	3.8	96.2	0.0	-0.10	1.66	0.83	0.79	0.25	23442	3003	3	0	0	0	0	logfile
✔	6X2A	21999	2024-09-29	2020-05-20	3.3	3.94	3.39	3.8	0.012	1.76	4.0	0.09	12.51	0.01	2.552	0.14	1.64	6.3	93.3	0.4	-1.32	0.81	0.82	3.41	3.8	0.006	0.65	0.0	0.04	13.44	0.00	2.508	5.76	1.81	3.8	96.2	0.0	0.13	2.19	0.79	0.80	2.73	21562	2875	3	0	0	0	0	logfile
✔	7N58	24182	2024-09-25	2021-06-05	3.4	3.79	3.58	3.8	0.004	0.84	0.0	0.05	13.09	0.01	2.146	14.80	0.00	2.8	97.2	0.0	-0.83	0.61	0.67	1.16	3.8	0.003	0.65	0.0	0.04	16.21	0.00	2.552	8.73	1.69	5.3	94.7	0.0	0.64	0.56	0.64	0.72	1.06	9326	1200	2	0	0	0	0	logfile
✔	7TLB	25986	2024-09-29	2022-01-18	3.06	3.26	—	3.2	0.012	1.74	1.0	0.09	13.14	0.01	2.531	0.11	0.82	5.3	94.7	0.1	-1.00	0.54	0.56	2.31	3.2	0.003	0.60	0.0	0.04	15.05	0.00	2.449	5.63	1.92	3.0	97.0	0.0	0.16	1.48	0.76	0.85	2.75	22806	2916	3	0	0	0	0	logfile
✔	7YoV	33988	2024-09-26	2022-08-02	3.25	3.39	3.20	3.3	0.011	1.17	0.0	0.06	11.20	0.01	2.102	6.46	1.14	7.6	92.4	0.0	-3.95	0.72	0.76	2.51	3.3	0.003	0.65	0.0	0.04	15.23	0.00	2.410	9.17	1.47	3.2	96.8	0.0	0.18	2.49	0.74	0.81	1.45	13232	1683	5	0	0	0	0	logfile
✔	7PQG	13593	2024-09-23	2021-09-21	3.7	4.20	—	4.0	0.004	0.88	0.0	0.05	12.56	0.01	2.204	28.36	0.28	7.4	92.6	0.0	-0.87	0.56	0.76	0.82	4.0	0.004	1.09	0.0	0.06	15.88	0.01	2.463	28.06	2.52	6.4	93.6	0.0	-1.24	1.21	0.56	0.77	0.82	3251	423	2	0	0	0	0	logfile
✔	6X2B	22000	2024-09-29	2020-05-20	3.6	4.27	3.73	3.9	0.012	1.74	2.0	0.09	13.17	0.01	2.530	0.34	2.08	6.7	92.9	0.4	-1.71	0.77	0.76	2.50	3.9	0.004	0.63	0.0	0.04	13.55	0.00	2.475	5.70	1.39	4.4	95.6	0.0	0.31	0.50	0.83	0.83	2.10	21120	2861	3	0	0	0	0	logfile
✔	6RiU	4898	2024-09-23	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.002	0.65	0.0	0.03	16.40	0.00	2.434	10.05	1.97	5.6	94.4	0.0	-1.03	1.42	0.61	0.75	1.30	2882	182	2	0	0	0	1430	logfile
✔	7Q3D	13789	2024-09-29	2021-10-27	3.35	4.59	3.40	3.7	0.013	1.35	0.0	0.08	11.91	0.01	2.466	1.34	0.00	1.5	98.5	0.0	0.50	0.86	0.73	0.90	3.7	0.004	0.67	0.0	0.04	15.03	0.00	2.198	11.17	2.34	4.0	96.0	0.0	0.28	2.84	0.87	0.74	0.92	22298	1391	3	0	0	0	11249	logfile
✘	6RJU	4906	2024-09-23	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1992	131	1	0	0	0	997	logfile
✔	7B9K	12104	2024-09-26	2020-12-14	3.16	3.23	3.17	3.3	0.005	0.66	0.0	0.05	14.96	0.01	2.168	13.51	1.11	5.0	95.0	0.0	-3.10	0.73	0.83	3.07	3.3	0.006	0.62	0.0	0.05	14.93	0.00	2.429	10.08	0.92	6.0	94.0	0.0	-0.60	0.43	0.73	0.85	2.50	59136	7680	24	0	0	0	0	logfile
✘	7RWA	24712	2024-09-27	2021-08-19	4.7	5.66	4.89	4.6	0.003	0.89	0.0	0.05	5.84	0.00	1.914	2.65	0.00	5.8	93.7	0.5	-0.12	0.84	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16158	3244	10	0	0	0	0	logfile
✔	7QFQ	13947	2024-09-25	2021-12-06	3.6	3.83	3.58	4.0	0.002	0.54	0.0	0.04	12.93	0.00	2.177	8.31	0.00	5.4	94.6	0.0	-0.70	0.65	0.70	1.50	4.0	0.004	0.58	0.0	0.04	14.90	0.00	2.484	7.17	1.51	6.9	93.1	0.0	-0.96	0.38	0.68	0.74	1.31	10659	1291	1	0	0	0	0	logfile
✔	7BoZ	30137	2024-09-28	2020-03-20	3.8	3.72	—	3.7	0.010	1.85	0.0	0.08	13.23	0.01	2.141	11.02	1.32	13.1	85.3	1.5	-5.40	0.70	0.77	1.43	3.7	0.003	0.89	0.0	0.05	15.83	0.00	2.459	10.94	2.89	9.8	89.9	0.3	-2.87	2.16	0.72	0.81	1.73	18516	2328	18	0	0	0	0	logfile

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