Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7EWL	31351	2024-09-26	2021-05-25	3.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13784	994	2	0	0	0	6756	logfile
✔	7Z0Z	14435	2024-09-24	2022-02-24	2.68	2.92	2.79	2.8	0.006	0.72	6.0	0.05	14.67	0.00	2.092	7.37	0.54	1.9	98.0	0.2	0.45	0.74	0.86	4.83	2.8	0.002	0.46	0.0	0.04	16.61	0.00	2.559	4.70	1.03	2.0	97.9	0.2	1.36	0.93	0.76	0.89	4.16	29466	3510	6	0	0	0	0	logfile
✘	7MR3	23955	2024-09-29	2021-05-07	3.6	4.01	—	3.9	0.005	0.83	0.0	0.05	16.47	0.01	2.250	5.33	0.00	6.5	93.5	0.0	-1.62	0.83	0.82	1.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23615	2854	5	40	0	0	0	logfile
✔	6T7A	10391	2024-09-25	2019-10-21	3.7	4.20	3.60	3.7	0.006	0.87	0.0	0.05	26.13	0.01	0.733	6.61	0.00	1.8	98.1	0.1	-3.03	0.85	0.81	1.66	3.7	0.004	0.75	0.0	0.04	26.29	0.00	2.328	14.32	2.95	2.9	97.1	0.0	2.07	1.74	0.86	0.85	1.52	10338	847	11	190	0	0	0	logfile
✔	3JCL	6526	2024-09-30	2015-12-21	4.0	4.03	—	4.0	0.018	1.83	9.0	0.09	9.75	0.01	2.019	2.74	0.00	5.2	94.3	0.6	-0.72	0.71	0.74	—	4.0	0.006	0.89	2.0	0.05	14.73	0.00	1.868	12.85	3.09	7.0	92.9	0.1	-0.66	1.75	0.72	0.74	—	24822	3201	3	0	0	0	0	logfile
✔	7WJM	32545	2024-09-26	2022-01-07	3.3	3.53	—	3.5	0.003	0.48	0.0	0.04	10.78	0.00	2.265	3.14	0.29	5.0	95.0	0.0	1.87	0.70	0.85	2.41	3.5	0.003	0.55	0.0	0.04	14.22	0.00	2.527	3.49	2.81	4.5	95.4	0.1	2.21	3.22	0.71	0.87	1.93	12970	1614	2	0	0	0	0	logfile
✔	6ZGK	11209	2024-09-25	2020-06-18	3.6	3.77	3.64	3.8	0.006	0.68	0.0	0.05	12.30	0.01	2.111	7.47	0.00	6.6	93.4	0.0	-0.58	0.50	0.54	1.42	3.7	0.003	0.62	0.0	0.04	15.38	0.00	2.509	4.54	3.86	4.0	96.0	0.0	-0.23	1.37	0.66	0.83	2.74	11630	1535	5	0	0	0	0	logfile
✔	7K11	22620	2024-09-25	2020-09-06	3.21	3.34	—	3.3	0.005	0.92	0.0	0.05	15.33	0.01	2.271	4.65	0.46	9.6	90.3	0.1	-5.00	0.69	0.76	1.74	3.3	0.002	0.62	0.0	0.04	16.77	0.00	2.503	5.05	2.01	8.1	91.9	0.0	-0.87	1.23	0.70	0.77	1.18	10011	1254	1	0	0	0	0	logfile
✔	7E83	31009	2024-09-26	2021-02-28	3.1	3.20	2.96	3.3	0.003	0.61	0.0	0.04	15.41	0.00	2.153	7.05	0.00	9.0	90.7	0.3	-0.08	0.71	0.80	3.01	3.2	0.003	0.58	0.0	0.04	16.99	0.00	2.520	6.08	1.04	7.0	92.7	0.3	0.59	0.46	0.69	0.82	2.26	12704	1544	8	0	0	0	0	logfile
✔	8G6G	29767	2024-09-26	2023-02-15	2.93	3.16	2.92	3.1	0.003	0.57	0.0	0.04	28.34	0.00	2.238	4.36	1.16	2.1	97.9	0.0	2.83	0.86	0.86	2.41	3.1	0.005	0.59	0.0	0.04	28.23	0.00	2.203	4.10	2.03	1.6	98.4	0.0	2.79	0.17	0.88	0.89	2.44	12985	825	11	314	0	0	0	logfile
✔	5LY6	4118	2024-09-23	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.005	0.87	0.0	0.04	13.99	0.01	2.505	17.30	0.00	11.3	88.5	0.2	-2.96	3.31	0.40	0.77	—	3725	471	1	0	0	0	0	logfile
✔	7E84	31010	2024-09-28	2021-02-28	3.1	3.20	3.04	3.3	0.002	0.53	0.0	0.04	14.85	0.00	2.263	6.57	0.00	7.0	92.8	0.2	-0.03	0.62	0.67	3.16	3.2	0.004	0.63	0.0	0.04	16.33	0.00	2.576	7.36	1.49	7.2	92.7	0.2	0.71	0.48	0.67	0.77	2.45	20580	2548	8	0	0	0	0	logfile
✔	7F3F	31433	2024-09-28	2021-06-16	3.1	3.20	3.04	3.3	0.002	0.62	2.0	0.04	14.67	0.00	2.268	7.16	0.14	7.3	92.3	0.3	0.02	0.66	0.74	2.70	3.2	0.004	0.61	0.0	0.04	16.35	0.00	2.600	7.01	1.08	6.9	93.0	0.2	0.78	0.48	0.66	0.76	2.47	20580	2548	8	0	0	0	0	logfile
✔	6QLF	4581	2024-09-26	2019-01-31	3.45	3.59	—	3.5	0.005	0.83	0.0	0.05	15.14	0.01	2.290	3.54	0.44	5.1	94.7	0.2	-3.91	0.75	0.82	2.21	3.6	0.004	0.63	0.0	0.04	16.74	0.00	2.368	4.74	2.85	5.0	94.9	0.1	0.65	1.21	0.77	0.85	1.78	13501	1783	8	0	0	0	0	logfile
✔	6TAU	10428	2024-09-24	2019-10-30	3.7	2.83	—	3.7	0.006	0.99	0.0	0.06	15.44	0.01	1.283	13.22	0.23	6.5	93.5	0.0	-4.23	0.55	0.75	1.32	3.0	0.003	0.61	0.0	0.04	17.66	0.00	2.510	4.39	1.80	3.9	96.1	0.0	0.73	0.64	0.56	0.75	1.29	8148	984	6	0	0	0	0	logfile
✔	7U5i	26351	2024-09-29	2022-03-02	3.26	3.14	3.37	3.2	0.002	0.56	0.0	0.04	11.62	0.00	2.219	7.74	2.82	0.8	99.2	0.0	0.87	0.63	0.75	1.83	3.2	0.003	0.66	0.0	0.04	16.35	0.00	2.439	13.03	1.96	3.1	96.9	0.0	-0.05	0.64	0.67	0.79	2.39	23539	2904	16	0	0	123	0	logfile
✔	7Q0B	13743	2024-09-29	2021-10-14	3.0	3.18	3.08	3.2	0.004	0.54	0.0	0.04	15.11	0.00	2.254	4.77	0.13	3.6	96.4	0.0	0.64	0.81	0.85	3.42	3.2	0.003	0.56	0.0	0.04	17.21	0.00	2.429	4.51	1.55	3.5	96.4	0.1	1.09	0.29	0.81	0.87	2.71	21168	2618	8	0	0	0	0	logfile
✔	6ZD0	11172	2024-09-24	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	3.7	0.003	0.77	0.0	0.04	5.49	0.00	2.602	5.29	0.00	15.7	84.1	0.2	-4.88	2.52	0.59	0.57	—	7962	1611	6	0	0	0	0	logfile
✔	7V21	31633	2024-09-26	2021-08-07	3.08	3.18	—	3.1	0.004	0.73	0.0	0.05	13.48	0.00	2.266	4.92	0.31	2.6	97.3	0.1	0.95	0.72	0.87	3.52	3.1	0.003	0.51	0.0	0.04	14.95	0.00	2.566	5.34	0.93	2.4	97.6	0.0	1.44	0.41	0.73	0.88	3.11	11903	1505	4	0	0	0	0	logfile
✔	7SZ4	25560	2024-09-23	2021-11-25	4.8	7.97	4.67	3.9	0.003	0.79	0.0	0.05	14.41	0.01	2.097	25.58	0.02	18.8	80.5	0.7	-3.20	0.89	0.78	—	3.9	0.003	0.81	0.0	0.05	14.77	0.01	2.334	21.76	0.00	19.1	80.2	0.6	-3.19	0.50	0.89	0.78	—	48242	5973	12	0	0	0	0	logfile

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