Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CTF	30463	2024-09-27	2020-08-18	4.8	4.92	—	4.8	0.009	1.36	0.0	0.06	19.00	0.01	2.264	6.48	8.84	6.9	93.1	0.1	-4.50	0.77	0.73	—	4.7	0.003	0.82	0.0	0.05	14.97	0.00	2.346	15.09	0.06	6.3	93.7	0.0	-1.09	3.94	0.79	0.78	—	14504	1775	7	0	2	0	0	logfile
✘	6UJA	20794	2024-09-24	2019-10-02	3.3	3.49	—	3.4	0.014	1.49	0.0	0.09	11.59	0.01	1.802	0.19	0.14	2.7	97.1	0.2	0.28	0.82	0.82	3.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8224	1128	10	0	23	0	0	logfile
✔	6QTi	4635	2024-09-27	2019-02-25	2.9	3.07	—	3.2	0.007	1.01	0.0	0.06	13.50	0.01	2.289	3.37	0.00	6.6	93.4	0.0	-3.74	0.78	0.87	3.51	3.1	0.004	0.65	0.0	0.04	15.94	0.00	2.382	5.92	2.12	5.7	94.3	0.0	0.51	1.58	0.77	0.87	2.40	15996	2076	4	0	19	0	0	logfile
✔	7WLK	32586	2024-09-25	2022-01-13	3.6	3.50	—	3.6	0.010	0.99	0.0	0.06	15.42	0.00	1.853	14.07	0.10	6.7	93.3	0.0	0.27	0.72	0.79	1.77	3.6	0.004	0.69	0.0	0.04	15.77	0.00	2.334	9.38	2.58	4.8	95.2	0.0	0.97	1.17	0.72	0.79	1.38	9461	1135	2	0	17	0	0	logfile
✔	7VVM	32144	2024-09-24	2021-11-06	3.2	2.40	3.19	3.2	0.015	1.76	0.0	0.09	13.51	0.00	2.200	6.43	0.60	5.2	94.8	0.0	-1.17	0.60	0.71	2.55	3.2	0.003	0.56	0.0	0.04	16.21	0.00	2.551	7.58	2.74	3.8	96.2	0.0	0.61	0.56	0.65	0.73	2.32	8507	1133	6	0	0	0	0	logfile
✔	6ZQJ	11366	2024-09-27	2020-07-09	4.2	3.97	4.23	4.3	0.002	0.55	0.0	0.04	12.26	0.00	2.286	6.20	1.55	2.9	97.0	0.1	-2.13	0.67	0.75	—	4.2	0.004	0.85	0.0	0.05	13.70	0.00	2.148	9.08	0.06	4.7	95.3	0.0	-0.90	2.01	0.69	0.79	—	15096	1965	12	0	3	0	0	logfile
✔	6X4S	22042	2024-09-23	2020-05-22	3.5	3.84	—	3.9	0.007	0.77	0.0	0.05	15.59	0.00	2.077	11.03	0.97	1.9	98.1	0.0	1.34	0.72	0.75	1.39	3.9	0.003	0.71	0.0	0.04	17.98	0.00	2.284	11.69	4.27	1.5	98.5	0.0	4.29	1.52	0.72	0.76	1.27	5373	706	9	0	1	0	0	logfile
✔	7WD8	32434	2024-09-23	2021-12-21	4.3	3.48	—	3.5	0.002	0.51	0.0	0.04	6.43	0.00	2.246	8.80	0.00	4.1	95.7	0.2	-0.96	0.60	0.61	—	3.5	0.003	0.71	0.0	0.04	12.43	0.00	2.558	10.69	0.00	4.5	95.3	0.2	-0.06	1.60	0.63	0.66	—	4029	524	4	0	0	0	0	logfile
✔	7Z0L	14427	2024-09-26	2022-02-23	4.0	4.43	4.11	4.3	0.005	0.95	0.0	0.06	15.67	0.01	2.223	7.63	0.65	5.5	94.5	0.0	-0.67	0.58	0.49	—	4.4	0.003	0.69	0.0	0.04	15.20	0.00	2.359	9.86	2.84	4.4	95.6	0.0	0.45	0.98	0.59	0.52	—	13752	856	9	0	12	0	6713	logfile
✔	7P8V	13255	2024-09-23	2021-07-23	3.6	3.94	—	3.8	0.013	1.81	1.0	0.10	20.31	0.01	2.287	5.15	0.36	3.3	96.7	0.0	-0.42	0.83	0.85	2.78	3.8	0.005	0.63	0.0	0.04	20.76	0.00	1.783	8.84	3.83	4.6	95.4	0.0	-0.55	1.00	0.81	0.84	2.42	5988	662	6	35	4	0	0	logfile
✔	7TLY	25990	2024-09-23	2022-01-19	3.0	3.01	2.93	3.0	0.010	1.32	2.0	0.08	12.98	0.00	2.556	1.69	0.00	2.5	97.5	0.0	0.36	0.64	0.76	4.98	3.0	0.003	0.62	0.0	0.04	13.45	0.01	2.551	3.88	3.51	2.3	97.7	0.0	-1.26	1.04	0.68	0.82	4.76	3105	408	4	0	4	0	0	logfile
✔	6Y5L	10701	2024-09-23	2020-02-25	3.6	3.66	2.91	3.6	0.004	0.70	0.0	0.05	14.31	0.01	2.032	5.91	0.00	7.8	92.2	0.0	-2.14	0.67	0.72	1.57	3.6	0.004	1.09	0.0	0.05	18.08	0.01	2.342	16.79	2.99	4.1	95.9	0.0	0.42	1.01	0.69	0.75	0.78	3855	477	9	0	3	0	0	logfile
✔	7NLL	12465	2024-09-24	2021-02-22	2.89	3.42	—	3.2	0.003	0.55	0.0	0.26	15.47	0.00	2.255	7.02	0.00	0.6	99.4	0.0	1.34	0.80	0.82	3.17	3.1	0.003	0.62	0.0	0.04	15.07	0.00	2.511	6.30	4.02	2.5	97.5	0.0	-0.09	1.21	0.82	0.87	3.45	5056	656	6	0	2	0	0	logfile
✔	7Vo0	32048	2024-09-24	2021-10-12	3.4	3.66	3.41	3.5	0.004	0.57	0.0	0.04	21.17	0.00	1.938	7.44	0.17	1.8	98.2	0.0	0.39	0.73	0.66	1.10	3.6	0.003	0.59	0.0	0.04	22.76	0.00	1.940	8.00	2.38	2.5	97.5	0.0	1.23	1.39	0.83	0.82	1.26	7661	786	14	86	18	0	0	logfile
✔	7RYC	24733	2024-09-24	2021-08-24	2.9	2.34	—	3.0	0.006	0.86	0.0	0.05	13.76	0.00	2.198	5.49	0.38	4.9	95.1	0.0	-2.98	0.80	0.77	2.64	3.0	0.004	0.65	0.0	0.04	15.82	0.00	2.300	2.49	1.75	2.8	97.2	0.0	-0.39	0.44	0.82	0.81	2.52	8277	1125	7	0	2	0	0	logfile
✔	7RR0	24649	2024-09-23	2021-08-08	3.12	3.40	—	3.4	0.004	0.97	0.0	0.06	12.28	0.01	2.327	2.79	0.00	1.4	98.6	0.0	0.12	0.75	0.77	2.73	3.4	0.003	0.76	0.0	0.04	16.08	0.00	2.484	8.22	2.25	2.6	97.4	0.0	0.06	0.67	0.76	0.80	2.73	3297	422	4	0	1	0	0	logfile
✔	7VV4	32137	2024-09-23	2021-11-04	2.97	3.66	—	3.7	0.007	1.20	2.0	0.09	14.73	0.01	1.600	15.98	3.75	4.2	95.8	0.0	-0.53	0.64	0.78	2.05	3.7	0.003	0.72	0.0	0.05	17.10	0.00	2.576	9.23	4.17	2.6	97.0	0.4	2.20	0.54	0.59	0.77	0.88	2181	269	3	0	1	0	0	logfile
✔	7VGQ	31975	2024-09-26	2021-09-18	4.0	4.26	—	4.2	0.009	1.27	2.0	0.07	12.16	0.01	2.211	7.11	0.74	13.9	85.9	0.2	-5.44	0.71	0.75	—	4.2	0.003	0.72	0.0	0.04	15.32	0.00	2.391	6.84	3.49	7.7	92.3	0.1	-2.29	0.64	0.69	0.76	—	13156	1661	3	0	2	0	0	logfile
✔	8DC2	27320	2024-09-24	2022-06-15	2.99	2.48	3.03	3.1	0.003	0.54	0.0	0.04	19.79	0.00	2.216	11.65	0.16	3.0	97.0	0.0	1.17	0.82	0.83	2.49	3.1	0.004	0.66	0.0	0.04	20.97	0.00	2.446	10.91	1.93	3.7	96.3	0.0	0.78	0.37	0.83	0.85	2.68	7296	673	4	87	0	0	0	logfile
✔	6W5C	21541	2024-09-25	2020-03-13	2.9	2.92	—	3.2	0.004	0.64	0.0	0.04	18.52	0.00	2.103	8.53	0.85	7.4	92.4	0.2	-1.44	0.84	0.82	4.35	3.2	0.006	0.64	0.0	0.04	20.04	0.00	2.490	9.57	1.94	7.9	92.1	0.0	-0.33	2.18	0.84	0.83	3.53	10183	1023	5	105	0	0	0	logfile

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