Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CT2	26978	2024-09-24	2022-05-13	3.1	2.85	3.02	2.9	0.004	0.61	0.0	0.04	12.30	0.00	2.209	4.55	2.03	2.6	97.0	0.4	1.50	0.61	0.86	5.28	2.9	0.003	0.55	0.0	0.04	12.93	0.00	2.582	5.80	1.22	3.0	96.6	0.4	2.21	0.25	0.62	0.86	4.73	7464	988	6	0	4	0	0	logfile
✔	8WUA	37852	2024-09-23	2023-10-20	3.6	4.37	3.76	4.3	0.004	0.75	0.0	0.04	15.35	0.01	2.105	8.78	0.49	5.8	94.2	0.0	0.31	0.49	0.58	0.41	4.3	0.003	0.74	0.0	0.04	16.95	0.00	2.577	8.87	2.96	6.1	93.9	0.0	0.48	1.82	0.54	0.69	1.15	5494	675	1	0	0	0	0	logfile
✔	6SJL	10218	2024-09-28	2019-08-13	2.6	3.00	2.64	2.9	0.013	0.87	0.0	0.05	14.60	0.01	1.985	13.09	0.05	5.7	94.1	0.2	-2.82	0.70	0.83	5.22	2.9	0.007	0.70	0.0	0.05	16.73	0.00	2.424	9.46	2.27	5.1	94.9	0.0	-0.85	1.13	0.70	0.85	4.39	19459	2537	6	0	0	0	0	logfile
✘	7EWP	31360	2024-09-30	2021-05-25	4.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20179	1816	4	0	0	0	6804	logfile
✔	7PXB	13696	2024-09-29	2021-10-08	4.0	3.59	—	3.4	0.004	0.73	0.0	0.04	11.58	0.00	2.022	8.96	2.05	3.6	96.4	0.0	1.14	0.77	0.74	—	3.4	0.003	0.64	0.0	0.04	14.90	0.00	1.936	9.90	1.84	4.8	95.2	0.0	0.13	1.41	0.78	0.76	—	22286	2828	13	0	12	0	0	logfile
✔	6XKL	22221	2024-09-29	2020-06-26	3.21	2.34	3.27	3.3	0.009	1.04	0.0	0.07	14.60	0.01	2.034	6.59	3.62	4.1	95.8	0.1	-0.34	0.73	0.76	3.00	3.3	0.003	0.64	0.0	0.05	15.11	0.00	2.523	4.29	3.53	2.6	97.4	0.0	0.35	1.19	0.74	0.78	2.36	22895	2920	17	0	50	0	0	logfile
✔	7UZX	26921	2024-09-27	2022-05-09	3.49	4.37	3.42	3.7	0.007	0.91	0.0	0.05	14.91	0.00	1.865	11.12	0.06	7.0	93.0	0.1	-0.88	0.82	0.72	1.88	3.7	0.004	0.66	0.0	0.04	16.58	0.00	2.487	8.62	1.61	4.5	95.5	0.0	0.35	1.84	0.88	0.84	1.66	14858	1760	9	36	0	0	0	logfile
✔	7TRS	26102	2024-09-24	2022-01-30	2.8	3.39	2.61	3.1	0.006	0.78	0.0	0.05	12.25	0.01	2.243	4.02	0.00	1.9	98.1	0.0	-1.09	0.71	0.83	3.37	3.1	0.003	0.73	0.0	0.04	15.28	0.00	2.504	7.21	1.98	2.5	97.5	0.0	1.04	1.06	0.71	0.84	3.18	8571	1121	6	0	1	0	0	logfile
✔	6N4Q	0341	2024-09-27	2018-11-20	3.6	4.01	3.86	4.0	0.008	1.03	0.0	0.06	10.17	0.01	2.288	3.98	0.11	7.9	92.1	0.0	-3.41	0.57	0.73	1.48	4.0	0.004	0.76	2.0	0.04	14.91	0.00	2.264	7.95	2.77	6.0	94.0	0.0	-0.54	0.79	0.57	0.74	1.23	16358	2052	12	0	0	0	0	logfile
✔	6KQo	0754	2024-09-27	2019-08-18	2.52	3.75	—	3.2	0.019	1.16	0.0	0.07	16.22	0.00	1.883	10.69	0.03	9.4	90.6	0.0	-5.07	0.87	0.85	3.52	3.3	0.005	0.79	1.0	0.13	14.84	0.00	1.788	5.90	1.15	4.4	95.6	0.0	-0.44	1.66	0.85	0.84	3.31	63373	3936	24	0	48	0	31225	logfile
✔	7JiC	22344	2024-09-23	2020-07-23	3.8	4.28	3.86	4.1	0.002	0.45	0.0	0.04	9.26	0.00	2.241	5.66	0.00	4.4	95.6	0.0	-1.97	0.68	0.80	2.30	4.1	0.003	0.66	0.0	0.04	13.96	0.00	2.526	7.96	2.77	3.1	96.9	0.0	0.45	1.99	0.68	0.81	2.57	5980	842	4	0	0	0	0	logfile
✔	7ZX7	15006	2024-09-24	2022-05-20	3.4	4.37	3.42	3.0	0.004	0.52	0.0	0.04	17.07	0.00	1.385	9.44	0.00	3.0	97.0	0.0	1.17	0.88	0.76	0.98	3.0	0.003	0.68	0.0	0.04	18.05	0.00	1.986	11.59	0.96	3.9	96.1	0.0	0.71	2.28	0.91	0.84	1.46	49277	5789	32	132	12	0	0	logfile
✔	6UoX	20834	2024-09-25	2019-10-15	4.02	4.28	—	4.1	0.010	1.18	1.0	0.08	14.59	0.01	2.461	0.89	0.00	8.2	91.8	0.0	-4.01	0.66	0.78	—	4.1	0.003	0.72	0.0	0.04	12.15	0.00	2.415	6.53	0.00	5.9	94.1	0.0	-1.51	0.95	0.68	0.81	—	9138	1161	4	0	14	0	0	logfile
✔	6U2J	20620	2024-09-28	2019-08-20	2.37	2.47	2.57	2.4	0.007	0.90	0.0	0.06	10.40	0.01	2.028	4.14	0.41	4.8	95.2	0.0	-3.36	0.79	0.83	4.12	2.4	0.005	0.73	0.0	0.05	14.52	0.00	2.477	6.81	2.18	4.2	95.8	0.0	-0.01	0.67	0.80	0.86	4.03	71744	9200	48	0	48	0	0	logfile
✔	7PW9	13679	2024-09-27	2021-10-06	3.12	3.26	—	3.2	0.004	0.67	0.0	0.16	15.15	0.00	2.021	5.77	0.07	3.3	96.6	0.0	1.77	0.73	0.79	1.98	3.3	0.002	0.53	0.0	0.04	15.29	0.00	1.937	3.94	1.35	3.0	97.0	0.0	2.43	1.73	0.74	0.83	1.97	16339	2066	7	0	199	0	0	logfile
✔	8iXL	35795	2024-09-25	2023-04-01	3.5	3.61	3.45	3.6	0.012	1.48	0.0	0.10	11.65	0.00	2.568	2.07	0.00	0.4	99.6	0.0	2.40	0.71	0.84	1.08	3.6	0.003	0.46	0.0	0.04	15.97	0.00	2.582	5.21	2.81	0.5	99.5	0.0	5.61	1.12	0.68	0.84	1.00	10970	1455	35	0	0	0	0	logfile
✔	7AFH	11765	2024-09-28	2020-09-19	3.59	4.69	6.65	2.8	0.009	0.89	2.0	0.05	22.89	0.01	1.752	32.75	0.00	7.5	92.5	0.0	-2.59	0.88	0.82	0.54	2.8	0.010	0.99	0.0	0.05	22.98	0.01	1.644	32.87	3.16	7.1	92.9	0.0	-1.50	1.29	0.89	0.86	0.82	18482	1103	11	456	12	0	0	logfile
✔	7Ui9	26542	2024-09-26	2022-03-28	3.3	4.81	3.23	2.8	0.004	0.69	0.0	0.05	13.63	0.01	0.850	9.75	0.06	1.9	98.0	0.1	0.62	0.59	0.52	0.82	2.8	0.004	0.67	0.0	0.04	14.93	0.00	2.375	10.44	0.82	3.1	96.9	0.0	1.22	0.50	0.81	0.80	0.70	63137	7857	33	0	0	0	0	logfile
✔	6MUX	9259	2024-09-26	2018-10-23	3.9	4.13	3.88	4.0	0.009	1.22	0.0	0.07	15.13	0.01	2.149	7.40	0.80	11.0	88.9	0.2	-4.69	0.77	0.82	1.35	4.0	0.005	0.84	3.0	0.05	17.29	0.00	1.669	13.60	3.23	7.2	92.8	0.0	-1.45	3.98	0.78	0.83	1.08	60284	7501	35	0	0	0	0	logfile
✔	7ZX8	15007	2024-09-24	2022-05-20	3.0	3.43	3.02	3.0	0.005	0.61	0.0	0.04	17.02	0.00	1.635	8.49	0.15	4.0	96.0	0.0	0.47	0.84	0.80	2.23	3.0	0.004	0.74	0.0	0.04	18.28	0.00	1.956	10.92	1.31	3.7	96.3	0.0	0.42	1.36	0.86	0.85	2.24	49534	5841	32	126	12	0	0	logfile

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