Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JCA	6441	2024-09-25	2015-11-24	4.8	4.59	—	4.5	0.012	1.49	0.0	0.07	18.84	0.01	2.370	2.63	0.00	7.2	92.8	0.0	-1.87	0.75	0.75	—	4.5	0.003	0.65	0.0	0.04	19.41	0.01	2.404	12.84	0.10	4.9	95.1	0.0	-0.01	2.46	0.76	0.77	—	11466	1226	16	80	4	0	0	logfile
✔	3JCF	6551	2024-09-26	2015-12-11	3.8	4.02	—	3.9	0.004	1.03	0.0	0.04	6.81	0.00	2.057	8.41	0.00	4.6	95.4	0.0	-1.63	0.74	0.81	2.11	3.9	0.003	0.69	0.0	0.04	12.59	0.00	1.971	11.37	1.91	3.3	96.7	0.0	1.65	0.69	0.75	0.85	1.75	14228	1745	10	0	13	0	0	logfile
✔	3JCL	6526	2024-09-30	2015-12-21	4.0	4.03	—	4.0	0.018	1.83	9.0	0.09	9.75	0.01	2.019	2.74	0.00	5.2	94.3	0.6	-0.72	0.71	0.74	—	4.0	0.006	0.89	2.0	0.05	14.73	0.00	1.868	12.85	3.09	7.0	92.9	0.1	-0.66	1.75	0.72	0.74	—	24822	3201	3	0	0	0	0	logfile
✔	3JCZ	6630	2024-09-29	2016-03-27	3.26	3.11	—	3.3	0.008	0.69	0.0	0.05	7.32	0.01	2.244	8.75	0.00	7.0	93.0	0.0	-4.42	0.77	0.85	4.34	3.3	0.005	0.68	0.0	0.05	14.10	0.00	2.484	9.62	2.16	5.6	94.4	0.0	-0.29	2.05	0.78	0.88	2.36	23286	2976	6	0	0	0	0	logfile
✔	3JD0	6631	2024-09-29	2016-03-28	3.47	3.93	—	3.8	0.012	0.82	0.0	0.05	10.31	0.00	1.989	15.40	0.00	13.3	85.9	0.8	-5.89	0.85	0.82	3.48	3.8	0.004	0.77	0.0	0.04	14.45	0.00	2.481	12.56	0.60	5.3	94.7	0.0	0.74	2.45	0.85	0.86	1.65	23478	2976	12	0	6	0	0	logfile
✔	3JD1	6634	2024-09-29	2016-03-28	3.3	2.71	—	3.0	0.015	1.01	0.0	0.06	11.30	0.01	1.935	12.60	0.00	8.2	91.6	0.2	-5.08	0.79	0.80	3.01	2.5	0.003	0.64	0.0	0.04	15.44	0.00	2.527	8.17	2.48	2.1	97.9	0.0	1.10	1.37	0.80	0.85	2.06	23814	2976	12	0	12	0	0	logfile
✔	3JD2	6635	2024-09-29	2016-03-28	3.3	2.95	—	2.9	0.011	1.04	0.0	0.06	10.88	0.01	2.219	10.21	0.72	5.6	93.6	0.8	-5.54	0.80	0.83	3.54	2.9	0.003	0.61	0.0	0.04	14.53	0.00	2.595	7.50	1.08	4.3	95.7	0.0	0.39	0.99	0.81	0.87	2.08	23814	2976	12	0	12	0	0	logfile
✔	3JD3	6632	2024-09-29	2016-03-28	3.6	3.38	—	3.5	0.011	1.02	0.0	0.06	13.44	0.01	2.125	18.17	0.00	10.7	89.3	0.0	-5.32	0.81	0.80	2.72	3.2	0.003	0.68	0.0	0.04	15.26	0.00	2.430	10.28	1.96	3.9	96.1	0.0	-0.72	0.99	0.81	0.83	2.09	24006	2976	12	0	18	0	0	logfile
✔	3JD4	6633	2024-09-29	2016-03-28	3.4	3.40	—	3.4	0.009	0.96	0.0	0.05	12.30	0.00	2.157	15.60	0.00	6.8	93.0	0.2	-4.82	0.80	0.86	3.90	3.4	0.003	0.64	0.0	0.04	15.65	0.00	2.493	8.41	2.32	3.3	96.7	0.0	1.05	0.97	0.80	0.87	2.70	24054	2982	12	0	18	0	0	logfile
✔	3JD8	6640	2024-09-25	2016-05-01	4.43	4.58	—	4.4	0.015	1.56	5.0	0.13	18.26	0.02	1.335	78.13	11.82	11.9	79.7	8.4	-3.27	0.54	0.62	—	4.4	0.004	0.97	0.0	0.05	12.37	0.00	2.444	15.67	0.00	9.3	89.8	0.9	-1.25	1.25	0.57	0.73	—	8050	1133	7	0	25	0	0	logfile
✔	3KTT	5148	2024-09-23	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	179.94	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.1	0.004	1.16	0.0	0.05	17.38	0.01	2.322	25.05	3.91	9.2	89.8	1.0	-2.48	1.77	0.31	0.41	—	3855	513	1	0	0	0	0	logfile
✔	3LoS	5137	2024-09-26	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	87.93	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.004	1.20	0.0	0.05	15.74	0.01	2.369	22.62	0.00	19.4	77.4	3.2	-4.64	1.35	0.61	0.54	—	63712	8512	16	0	0	0	0	logfile
✘	4CE4	2490	2024-09-27	2013-11-08	4.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65473	3572	48	1437	984	0	0	logfile
✔	4Ui9	2924	2024-09-27	2015-03-27	3.6	3.87	—	3.6	0.016	1.97	124.0	0.11	17.96	0.01	0.849	19.88	11.86	5.3	92.8	1.9	-1.90	0.85	0.73	1.60	3.6	0.003	0.81	0.0	0.04	17.43	0.00	2.213	11.88	3.23	5.4	94.2	0.4	0.76	2.86	0.89	0.83	1.12	66453	8472	25	0	5	0	0	logfile
✔	4UiS	2974	2024-09-25	2015-04-03	4.4	4.48	—	4.4	0.009	1.29	0.0	0.06	9.92	0.01	1.546	24.94	1.19	7.7	87.4	5.0	-1.97	0.50	0.56	—	4.4	0.004	0.84	0.0	0.04	12.18	0.00	2.476	12.80	0.00	9.5	89.1	1.3	-1.94	1.66	0.55	0.74	—	8518	791	10	0	458	0	0	logfile
✘	4V19	2787	2024-09-28	2014-09-25	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69409	4361	42	1583	171	204	0	logfile
✘	5A2Q	3019	2024-09-30	2015-05-21	3.9	4.01	—	3.9	0.008	1.23	0.0	0.05	24.76	0.01	1.830	13.38	12.93	4.3	95.5	0.2	-3.44	0.89	0.88	1.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	80749	4931	45	1922	115	144	0	logfile
✔	5A63	3061	2024-09-25	2015-06-24	3.4	3.50	3.42	3.5	0.010	1.69	8.0	0.11	20.48	0.01	2.079	39.51	13.74	6.4	91.5	2.1	-0.17	0.36	0.40	2.09	3.5	0.004	0.78	0.0	0.05	17.59	0.00	2.394	12.49	5.44	6.0	93.8	0.2	0.12	2.91	0.62	0.82	1.60	10003	1223	13	0	22	0	0	logfile
✔	5A6E	3062	2024-09-26	2015-06-25	4.5	6.76	—	5.1	0.010	3.73	0.0	0.05	15.55	0.01	2.112	8.77	3.19	11.1	88.8	0.2	-5.00	0.36	0.56	—	4.8	0.002	0.56	0.0	0.03	10.40	0.00	2.249	6.20	0.00	5.1	94.9	0.0	-0.28	1.44	0.38	0.66	—	11093	634	4	0	182	0	5102	logfile
✔	5A6F	3063	2024-09-25	2015-06-25	4.2	5.75	—	5.0	0.012	1.50	0.0	0.05	12.32	0.01	2.112	10.08	3.74	12.2	87.6	0.2	-4.94	0.56	0.74	—	4.6	0.004	0.59	0.0	0.04	10.84	0.00	2.290	7.50	0.00	6.4	93.6	0.0	-0.98	0.94	0.57	0.76	—	8881	540	2	0	43	0	4330	logfile

• ← previous
• Page 3 of 538
• next →